Rh5AG425700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0004872
Physical Location & Seq
Reverse (-)
73433541 .. 73434642
1102 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG425700.1

Sequence Viewer

Length: 417 bp
ATGCTGAACAAGATTAGATCTGAGCGTCAGGTGTTCAGGAGGGCGACCGCACAAGGAAGGGGGAACGCCCATCATCGTAAACCTCTCTCAAATCCAATCTCTTTGGCTGATATGGACGACCTCTGGCTCTCCCAACGCTACCACAACCACTCTGACATTTACGACGACAGCCGCCGTGCCAGCCCAACAATTTATCCCGCAAAAAGACCCAGCCCCCTCAGCCCGGCAAGAAGCAGTTCATCATCGAACCCTTTCAAAGGTTTGGCCTCGATCCCGAAGCTCGTGTTTGTCACGCAAATGGGTAGCAAGACTGAAGAACCAAAGGCTGCTCCTAGTGAACCTTTCTCTTTTGATAAATTCTTATCAGGAGTGTGTGCTCCTAGTATGCTCTTGACTTTGGTTTTAGGAGGATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

15.24

Weight (kDa)

10.07

Isoelectric Point (pI)

72.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 48, 172, 198
AclWI GGATC 1 cut(s) 265
AcsI RAATTY 1 cut(s) 356
AcuI CTGAAG 1 cut(s) 333
AfiI CCNNNNNNNGG 2 cut(s) 223, 257
AgsI TTSAA 1 cut(s) 256
AluBI AGCT 1 cut(s) 280
AluI AGCT 1 cut(s) 280
Alw21I GWGCWC 1 cut(s) 379
AlwI GGATC 1 cut(s) 265
AoxI GGCC 1 cut(s) 264
ApeKI GCWGC 1 cut(s) 326
ApoI RAATTY 1 cut(s) 356
Asp700I GAANNNNTTC 2 cut(s) 235, 251
AsuC2I CCSGG 1 cut(s) 224
BauI CACGAG 1 cut(s) 281
Bbv12I GWGCWC 1 cut(s) 379
BbvCI CCTCAGC 1 cut(s) 218
BbvI GCAGC 1 cut(s) 313
BccI CCATC 1 cut(s) 78
BceAI ACGGC 1 cut(s) 159
BcnI CCSGG 1 cut(s) 224
BfaI CTAG 2 cut(s) 333, 381
BglII AGATCT 1 cut(s) 17
BisI GCNGC 2 cut(s) 172, 327
BlsI GCNGC 2 cut(s) 173, 328
Bme1390I CCNGG 1 cut(s) 224
BmrFI CCNGG 1 cut(s) 224
Bpu10I CCTNAGC 1 cut(s) 218
BpuMI CCSGG 1 cut(s) 224
Bsc4I CCNNNNNNNGG 2 cut(s) 223, 257
BseLI CCNNNNNNNGG 2 cut(s) 223, 257
BseMII CTCAG 2 cut(s) 12, 232
BseXI GCAGC 1 cut(s) 313
BseYI CCCAGC 1 cut(s) 209
Bsh1285I CGRYCG 1 cut(s) 48
BshFI GGCC 1 cut(s) 266
BsiEI CGRYCG 1 cut(s) 48
BsiHKAI GWGCWC 1 cut(s) 379
BsiSI CCGG 1 cut(s) 224
BslI CCNNNNNNNGG 2 cut(s) 223, 257
BsnI GGCC 1 cut(s) 266
Bsp1286I GDGCHC 1 cut(s) 379
Bsp143I GATC 2 cut(s) 17, 270
BspACI CCGC 3 cut(s) 48, 172, 198
BspANI GGCC 1 cut(s) 266
BspCNI CTCAG 2 cut(s) 13, 231
BspPI GGATC 1 cut(s) 265
BssMI GATC 2 cut(s) 17, 270
BssSI CACGAG 1 cut(s) 281
Bst2BI CACGAG 1 cut(s) 281
BstC8I GCNNGC 1 cut(s) 181
BstDEI CTNAG 2 cut(s) 21, 218
BstENI CCTNNNNNAGG 1 cut(s) 255
BstKTI GATC 2 cut(s) 20, 273
BstMBI GATC 2 cut(s) 17, 270
BstMCI CGRYCG 1 cut(s) 48
BstMWI GCNNNNNNNGC 2 cut(s) 180, 219
BstSCI CCNGG 1 cut(s) 222
BstV1I GCAGC 1 cut(s) 313
BstX2I RGATCY 1 cut(s) 17
BstYI RGATCY 1 cut(s) 17
BsuRI GGCC 1 cut(s) 266
Cac8I GCNNGC 1 cut(s) 181
CseI GACGC 1 cut(s) 14
CviJI RGCY 9 cut(s) 107, 127, 171, 183, 213, 222, 266, 280, 326
CviKI_1 RGCY 9 cut(s) 107, 127, 171, 183, 213, 222, 266, 280, 326
DdeI CTNAG 2 cut(s) 21, 218
DpnI GATC 2 cut(s) 19, 272
DpnII GATC 2 cut(s) 17, 270
Eco57I CTGAAG 1 cut(s) 333
EcoNI CCTNNNNNAGG 1 cut(s) 255
FaiI YATR 3 cut(s) 113, 386, 415
FauI CCCGC 1 cut(s) 205
Fnu4HI GCNGC 2 cut(s) 172, 327
Fsp4HI GCNGC 2 cut(s) 172, 327
FspBI CTAG 2 cut(s) 333, 381
GluI GCNGC 2 cut(s) 172, 327
GsaI CCCAGC 1 cut(s) 213
HaeIII GGCC 1 cut(s) 266
HapII CCGG 1 cut(s) 224
HgaI GACGC 1 cut(s) 14
HpaII CCGG 1 cut(s) 224
Hpy166II GTNNAC 2 cut(s) 80, 338
Hpy188I TCNGA 2 cut(s) 22, 154
Hpy188III TCNNGA 4 cut(s) 37, 274, 366, 391
Hpy8I GTNNAC 2 cut(s) 80, 338
Hpy99I CGWCG 1 cut(s) 167
HpyAV CCTTC 1 cut(s) 51
HpyF10VI GCNNNNNNNGC 2 cut(s) 180, 219
HpyF3I CTNAG 2 cut(s) 21, 218
Kzo9I GATC 2 cut(s) 17, 270
LmnI GCTCC 2 cut(s) 334, 382
LpnPI CCDG 7 cut(s) 14, 22, 109, 193, 223, 237, 351
Lsp1109I GCAGC 1 cut(s) 313
MaeI CTAG 2 cut(s) 333, 381
MaeIII GTNAC 1 cut(s) 289
MalI GATC 2 cut(s) 19, 272
MboI GATC 2 cut(s) 17, 270
MboII GAAGA 1 cut(s) 326
MflI RGATCY 1 cut(s) 17
MhlI GDGCHC 1 cut(s) 379
MluCI AATT 2 cut(s) 189, 356
MnlI CCTC 6 cut(s) 33, 93, 131, 227, 277, 401
MroXI GAANNNNTTC 2 cut(s) 235, 251
MslI CAYNNNNRTG 1 cut(s) 296
MspI CCGG 1 cut(s) 224
MspR9I CCNGG 1 cut(s) 224
MwoI GCNNNNNNNGC 2 cut(s) 180, 219
NciI CCSGG 1 cut(s) 224
NdeII GATC 2 cut(s) 17, 270
NmuCI GTSAC 1 cut(s) 289
PdmI GAANNNNTTC 2 cut(s) 235, 251
PkrI GCNGC 2 cut(s) 173, 328
PspFI CCCAGC 1 cut(s) 209
PsuI RGATCY 1 cut(s) 17
RseI CAYNNNNRTG 1 cut(s) 296
SatI GCNGC 2 cut(s) 172, 327
Sau3AI GATC 2 cut(s) 17, 270
ScrFI CCNGG 1 cut(s) 224
SduI GDGCHC 1 cut(s) 379
SetI ASST 6 cut(s) 33, 85, 123, 262, 282, 343
SmiMI CAYNNNNRTG 1 cut(s) 296
Sse9I AATT 2 cut(s) 189, 356
SsiI CCGC 3 cut(s) 48, 172, 198
SspMI CTAG 2 cut(s) 333, 381
StyD4I CCNGG 1 cut(s) 222
TaqI TCGA 2 cut(s) 245, 269
TasI AATT 2 cut(s) 189, 356
TauI GCSGC 1 cut(s) 174
TseFI GTSAC 1 cut(s) 289
TseI GCWGC 1 cut(s) 326
Tsp45I GTSAC 1 cut(s) 289
TspDTI ATGAA 1 cut(s) 228
XagI CCTNNNNNAGG 1 cut(s) 255
XapI RAATTY 1 cut(s) 356
XmnI GAANNNNTTC 2 cut(s) 235, 251
XspI CTAG 2 cut(s) 333, 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.