Rh5BG555000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0004872
Physical Location & Seq
Reverse (-)
88228017 .. 88231212
3196 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG555000.1

Sequence Viewer

Length: 504 bp
ATGGACGGCCTCTGGCTCTCCCAACGCTACTACAAACACTCTGACATTTACGACGACAGCTGCCGTGCCAGCCCAACAATTTGTCCCACAAAAAGACCCATCCCCCTCAGCTCGGCAAGAAGCTGTTCATCATCGAACCCTTTCAATGGTTTGGCCTCGATCCCGAAGCTCGTGTTTGTCATGGCTTTGCTCGGGCTCTATGTTTATGTTTTTGTTGAGGGATATAGTATGGCACATCATTTACGAAAGATTTTTGGATGTGAGAACTCTAGCTGGAGAACAAGAGAATTGTGGTACAATACTCAAGGAATGGGCTTCAAGCTTGCAGTGATTTTGCTTACAACACTATCTTGGGAGATCGAGCAAATTGGATTATGGGGTCACATTTACATTGTCACATTTGGTCTAATTCAACGTCTTGACTGTTATGGTCGTGTTGGAGAAAATTGGAAGGGATTACGGGGTCACATTGACATTGTCACATTTGGTCTAATTCGACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

19.13

Weight (kDa)

9.02

Isoelectric Point (pI)

43.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 154
AfaI GTAC 1 cut(s) 296
AfiI CCNNNNNNNGG 2 cut(s) 112, 146
AgsI TTSAA 3 cut(s) 145, 319, 413
AluBI AGCT 6 cut(s) 60, 111, 123, 169, 273, 322
AluI AGCT 6 cut(s) 60, 111, 123, 169, 273, 322
AlwI GGATC 1 cut(s) 154
Ama87I CYCGRG 1 cut(s) 191
AoxI GGCC 2 cut(s) 7, 153
ApeKI GCWGC 1 cut(s) 60
Asp700I GAANNNNTTC 2 cut(s) 124, 140
AvaI CYCGRG 1 cut(s) 191
BanII GRGCYC 1 cut(s) 198
BauI CACGAG 1 cut(s) 170
BbvCI CCTCAGC 1 cut(s) 107
BbvI GCAGC 1 cut(s) 47
BccI CCATC 1 cut(s) 107
BceAI ACGGC 2 cut(s) 22, 48
BfaI CTAG 1 cut(s) 270
BisI GCNGC 1 cut(s) 61
BlsI GCNGC 1 cut(s) 62
BmeT110I CYCGRG 1 cut(s) 191
BpmI CTGGAG 1 cut(s) 295
Bpu10I CCTNAGC 1 cut(s) 107
BpuEI CTTGAG 1 cut(s) 288
Bsc4I CCNNNNNNNGG 2 cut(s) 112, 146
BseGI GGATG 2 cut(s) 99, 263
BseLI CCNNNNNNNGG 2 cut(s) 112, 146
BseMII CTCAG 1 cut(s) 121
BseXI GCAGC 1 cut(s) 47
BshFI GGCC 2 cut(s) 9, 155
BsiHKCI CYCGRG 1 cut(s) 191
BslFI GGGAC 1 cut(s) 69
BslI CCNNNNNNNGG 2 cut(s) 112, 146
BsmFI GGGAC 1 cut(s) 69
BsnI GGCC 2 cut(s) 9, 155
BsoBI CYCGRG 1 cut(s) 191
Bsp1286I GDGCHC 1 cut(s) 198
Bsp143I GATC 2 cut(s) 159, 357
BspANI GGCC 2 cut(s) 9, 155
BspCNI CTCAG 1 cut(s) 120
BspPI GGATC 1 cut(s) 154
BssMI GATC 2 cut(s) 159, 357
BssSI CACGAG 1 cut(s) 170
Bst2BI CACGAG 1 cut(s) 170
Bst4CI ACNGT 2 cut(s) 425, 501
BstC8I GCNNGC 2 cut(s) 70, 324
BstDEI CTNAG 1 cut(s) 107
BstF5I GGATG 2 cut(s) 99, 263
BstKTI GATC 2 cut(s) 162, 360
BstMBI GATC 2 cut(s) 159, 357
BstMWI GCNNNNNNNGC 1 cut(s) 69
BstV1I GCAGC 1 cut(s) 47
BsuRI GGCC 2 cut(s) 9, 155
BtsCI GGATG 2 cut(s) 99, 263
BtsI GCAGTG 1 cut(s) 333
BtsIMutI CAGTG 1 cut(s) 333
Cac8I GCNNGC 2 cut(s) 70, 324
Csp6I GTAC 1 cut(s) 295
CviAII CATG 1 cut(s) 181
CviQI GTAC 1 cut(s) 295
DdeI CTNAG 1 cut(s) 107
DpnI GATC 2 cut(s) 161, 359
DpnII GATC 2 cut(s) 159, 357
Eco24I GRGCYC 1 cut(s) 198
Eco88I CYCGRG 1 cut(s) 191
EcoT38I GRGCYC 1 cut(s) 198
FaeI CATG 1 cut(s) 184
FaiI YATR 7 cut(s) 182, 201, 207, 225, 230, 376, 429
FaqI GGGAC 1 cut(s) 69
FatI CATG 1 cut(s) 180
Fnu4HI GCNGC 1 cut(s) 61
FokI GGATG 2 cut(s) 86, 270
FriOI GRGCYC 1 cut(s) 198
Fsp4HI GCNGC 1 cut(s) 61
FspBI CTAG 1 cut(s) 270
GluI GCNGC 1 cut(s) 61
GsuI CTGGAG 1 cut(s) 295
HaeIII GGCC 2 cut(s) 9, 155
Hin1II CATG 1 cut(s) 184
HindIII AAGCTT 1 cut(s) 320
Hpy188I TCNGA 1 cut(s) 43
Hpy188III TCNNGA 2 cut(s) 163, 419
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 1 cut(s) 445
HpyCH4III ACNGT 2 cut(s) 425, 501
HpyCH4IV ACGT 1 cut(s) 415
HpyCH4V TGCA 1 cut(s) 326
HpyF10VI GCNNNNNNNGC 1 cut(s) 69
HpyF3I CTNAG 1 cut(s) 107
HpySE526I ACGT 1 cut(s) 415
Hsp92II CATG 1 cut(s) 184
Kzo9I GATC 2 cut(s) 159, 357
LpnPI CCDG 2 cut(s) 82, 259
Lsp1109I GCAGC 1 cut(s) 47
MaeI CTAG 1 cut(s) 270
MaeII ACGT 1 cut(s) 415
MaeIII GTNAC 4 cut(s) 380, 394, 464, 478
MalI GATC 2 cut(s) 161, 359
MboI GATC 2 cut(s) 159, 357
MhlI GDGCHC 1 cut(s) 198
MluCI AATT 6 cut(s) 78, 287, 366, 408, 445, 492
MmeI TCCRAC 1 cut(s) 418
MnlI CCTC 4 cut(s) 20, 116, 166, 211
MroXI GAANNNNTTC 2 cut(s) 124, 140
MspA1I CMGCKG 1 cut(s) 60
MwoI GCNNNNNNNGC 1 cut(s) 69
NdeII GATC 2 cut(s) 159, 357
NlaIII CATG 1 cut(s) 184
NmeAIII GCCGAG 1 cut(s) 92
NmuCI GTSAC 4 cut(s) 380, 394, 464, 478
PdmI GAANNNNTTC 2 cut(s) 124, 140
PflFI GACNNNGTC 1 cut(s) 476
PkrI GCNGC 1 cut(s) 62
PsyI GACNNNGTC 1 cut(s) 476
PvuII CAGCTG 1 cut(s) 60
RsaI GTAC 1 cut(s) 296
RsaNI GTAC 1 cut(s) 295
SatI GCNGC 1 cut(s) 61
Sau3AI GATC 2 cut(s) 159, 357
SduI GDGCHC 1 cut(s) 198
SetI ASST 7 cut(s) 62, 113, 125, 171, 275, 324, 418
SmlI CTYRAG 1 cut(s) 303
SmoI CTYRAG 1 cut(s) 303
Sse9I AATT 6 cut(s) 78, 287, 366, 408, 445, 492
SspMI CTAG 1 cut(s) 270
TaaI ACNGT 2 cut(s) 425, 501
TaiI ACGT 1 cut(s) 418
TaqI TCGA 4 cut(s) 134, 158, 360, 496
TasI AATT 6 cut(s) 78, 287, 366, 408, 445, 492
TscAI CASTG 1 cut(s) 333
TseFI GTSAC 4 cut(s) 380, 394, 464, 478
TseI GCWGC 1 cut(s) 60
Tsp45I GTSAC 4 cut(s) 380, 394, 464, 478
TspDTI ATGAA 1 cut(s) 117
TspRI CASTG 1 cut(s) 333
Tth111I GACNNNGTC 1 cut(s) 476
XmnI GAANNNNTTC 2 cut(s) 124, 140
XspI CTAG 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.