pycom03g16180
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Reverse (-)
17337626 .. 17338036
411 bp
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UTR
Exon/CDS
Intron
pycom03g16180.2

Sequence Viewer

Length: 267 bp
ATGGTCCTTCCAGTTTTCCAGGAGATCACTGATTTGACTACCAAAATTCAGGATTTGAAGAGAGAGGATAATGCCTCGTCTGATGAAGTCAAGCTCACCAAGAATTTCTTTCCGGACCCTGCAGTTCTAATCACCATTCAGCTGCTAAGTGAGCCTTTTCTCTTTGATTGTAATTTGTTGTTTCTGGATATCCAAATCCATAAGCTTCATCGGAATTGCCCTGGTATGGTTTCTGAAAACTCACTTTATAACTGTTGTTTGCTGTGA

Protein Analysis

89

Amino Acids

10.11

Weight (kDa)

4.71

Isoelectric Point (pI)

45.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 249
AccIII TCCGGA 1 cut(s) 112
AcsI RAATTY 2 cut(s) 45, 103
AfiI CCNNNNNNNGG 1 cut(s) 226
AgsI TTSAA 1 cut(s) 58
AjnI CCWGG 2 cut(s) 18, 220
AluBI AGCT 3 cut(s) 94, 142, 205
AluI AGCT 3 cut(s) 94, 142, 205
Aor13HI TCCGGA 1 cut(s) 112
ApeKI GCWGC 1 cut(s) 142
ApoI RAATTY 2 cut(s) 45, 103
AspS9I GGNCC 2 cut(s) 4, 115
AsuHPI GGTGA 2 cut(s) 88, 124
AvaII GGWCC 2 cut(s) 4, 115
BbvI GCAGC 1 cut(s) 129
BciT130I CCWGG 2 cut(s) 20, 222
BfmI CTRYAG 1 cut(s) 120
BisI GCNGC 1 cut(s) 143
BlsI GCNGC 1 cut(s) 144
Bme1390I CCNGG 2 cut(s) 20, 222
Bme18I GGWCC 2 cut(s) 4, 115
BmgT120I GGNCC 2 cut(s) 4, 115
BmiI GGNNCC 1 cut(s) 117
BmrFI CCNGG 2 cut(s) 20, 222
BsaJI CCNNGG 1 cut(s) 220
BsaWI WCCGGW 1 cut(s) 112
Bsc4I CCNNNNNNNGG 1 cut(s) 226
Bse1I ACTGG 1 cut(s) 11
BseAI TCCGGA 1 cut(s) 112
BseBI CCWGG 2 cut(s) 20, 222
BseDI CCNNGG 1 cut(s) 220
BseLI CCNNNNNNNGG 1 cut(s) 226
BseNI ACTGG 1 cut(s) 11
BseXI GCAGC 1 cut(s) 129
BsiSI CCGG 1 cut(s) 113
BslI CCNNNNNNNGG 1 cut(s) 226
Bsp13I TCCGGA 1 cut(s) 112
Bsp143I GATC 1 cut(s) 24
BspEI TCCGGA 1 cut(s) 112
BspLI GGNNCC 1 cut(s) 117
BspMAI CTGCAG 1 cut(s) 124
BsrI ACTGG 1 cut(s) 11
BssECI CCNNGG 1 cut(s) 220
BssMI GATC 1 cut(s) 24
Bst2UI CCWGG 2 cut(s) 20, 222
Bst4CI ACNGT 1 cut(s) 254
Bst6I CTCTTC 1 cut(s) 53
BstDEI CTNAG 1 cut(s) 146
BstKTI GATC 1 cut(s) 27
BstMBI GATC 1 cut(s) 24
BstMWI GCNNNNNNNGC 1 cut(s) 151
BstNI CCWGG 2 cut(s) 20, 222
BstSCI CCNGG 2 cut(s) 18, 220
BstSFI CTRYAG 1 cut(s) 120
BstV1I GCAGC 1 cut(s) 129
BtsIMutI CAGTG 1 cut(s) 27
Cfr13I GGNCC 2 cut(s) 4, 115
CviJI RGCY 4 cut(s) 94, 142, 154, 205
CviKI_1 RGCY 4 cut(s) 94, 142, 154, 205
DdeI CTNAG 1 cut(s) 146
DpnI GATC 1 cut(s) 26
DpnII GATC 1 cut(s) 24
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
Eco32I GATATC 1 cut(s) 190
Eco47I GGWCC 2 cut(s) 4, 115
EcoRII CCWGG 2 cut(s) 18, 220
EcoRV GATATC 1 cut(s) 190
FaiI YATR 3 cut(s) 201, 227, 249
FalI AAGNNNNNCTT 4 cut(s) 92, 124, 139, 171
Fnu4HI GCNGC 1 cut(s) 143
Fsp4HI GCNGC 1 cut(s) 143
GluI GCNGC 1 cut(s) 143
HapII CCGG 1 cut(s) 113
HindIII AAGCTT 1 cut(s) 203
HpaII CCGG 1 cut(s) 113
HphI GGTGA 2 cut(s) 88, 124
Hpy188I TCNGA 3 cut(s) 82, 213, 235
Hpy188III TCNNGA 3 cut(s) 50, 113, 185
HpyAV CCTTC 1 cut(s) 17
HpyCH4III ACNGT 1 cut(s) 254
HpyCH4V TGCA 1 cut(s) 122
HpyF10VI GCNNNNNNNGC 1 cut(s) 151
HpyF3I CTNAG 1 cut(s) 146
Kpn2I TCCGGA 1 cut(s) 112
Kzo9I GATC 1 cut(s) 24
LpnPI CCDG 9 cut(s) 5, 24, 32, 35, 126, 132, 170, 207, 234
Lsp1109I GCAGC 1 cut(s) 129
MalI GATC 1 cut(s) 26
MboI GATC 1 cut(s) 24
MboII GAAGA 1 cut(s) 70
MluCI AATT 4 cut(s) 45, 103, 172, 214
MnlI CCTC 2 cut(s) 58, 85
MroI TCCGGA 1 cut(s) 112
MspA1I CMGCKG 1 cut(s) 142
MspI CCGG 1 cut(s) 113
MspR9I CCNGG 2 cut(s) 20, 222
MvaI CCWGG 2 cut(s) 20, 222
MwoI GCNNNNNNNGC 1 cut(s) 151
NdeII GATC 1 cut(s) 24
NlaIV GGNNCC 1 cut(s) 117
PfoI TCCNGGA 1 cut(s) 18
PkrI GCNGC 1 cut(s) 144
PsiI TTATAA 1 cut(s) 249
Psp6I CCWGG 2 cut(s) 18, 220
PspGI CCWGG 2 cut(s) 18, 220
PspN4I GGNNCC 1 cut(s) 117
PspPI GGNCC 2 cut(s) 4, 115
PstI CTGCAG 1 cut(s) 124
PvuII CAGCTG 1 cut(s) 142
SatI GCNGC 1 cut(s) 143
Sau3AI GATC 1 cut(s) 24
Sau96I GGNCC 2 cut(s) 4, 115
ScrFI CCNGG 2 cut(s) 20, 222
SetI ASST 3 cut(s) 96, 144, 207
SfcI CTRYAG 1 cut(s) 120
SinI GGWCC 2 cut(s) 4, 115
Sse9I AATT 4 cut(s) 45, 103, 172, 214
StyD4I CCNGG 2 cut(s) 18, 220
TaaI ACNGT 1 cut(s) 254
TasI AATT 4 cut(s) 45, 103, 172, 214
TscAI CASTG 1 cut(s) 34
TseI GCWGC 1 cut(s) 142
TspDTI ATGAA 2 cut(s) 99, 197
TspRI CASTG 1 cut(s) 34
VpaK11BI GGWCC 2 cut(s) 4, 115
XapI RAATTY 2 cut(s) 45, 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.