Rroxscaffold_3G00246700
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
39928205 .. 39929696
1492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00246700.1

Sequence Viewer

Length: 414 bp
ATGTACGGCCTGCGGCTCTCCCAACGCCGCCGCCACCACTCGGACAACTATGACGACGGCCACCGTGCCCAGCCCTATAATCTGTCCCGCAAAAGGCCCGCCCTCTCGGCCGGCAAGAAGCAGTTCATCATCGAACCCTTCAAAGGTTTGGCCTCAATCCCAAAGCTCGCGTCGTCACGGTATAAAGTTGGACGGATAGAGCAGCTGGAAACTTCGATCAACCAAAAGCCCGAGGTGCCAATGCCGTGTAGGCCTCTAAACACCGAGGAAGTTTCAGCAGGAGCTTCAATGGCTATTGACTTTGAATCCGAGAAAGAAGGTGAGCTTGTTGTCAAGTCAAATGGGGTTACAAGAAGGACCTTTAAGTTTGATGCAGTTTTCGGCCCTCAAGCAGACCAAGCTTTGCATTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

137

Amino Acids

15.44

Weight (kDa)

9.62

Isoelectric Point (pI)

57.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 412
AccB1I GGYRCC 1 cut(s) 235
AccII CGCG 1 cut(s) 170
AciI CCGC 5 cut(s) 13, 28, 31, 88, 99
AcoI YGGCCR 2 cut(s) 58, 108
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 3 cut(s) 40, 93, 143
AgsI TTSAA 3 cut(s) 142, 288, 305
AluBI AGCT 5 cut(s) 166, 205, 284, 325, 401
AluI AGCT 5 cut(s) 166, 205, 284, 325, 401
Ama87I CYCGRG 1 cut(s) 230
AoxI GGCC 7 cut(s) 7, 58, 95, 108, 150, 251, 382
ApeKI GCWGC 1 cut(s) 202
ArsI GACNNNNNNTTYG 2 cut(s) 155, 187
Asp700I GAANNNNTTC 1 cut(s) 122
AspS9I GGNCC 3 cut(s) 96, 357, 383
AsuHPI GGTGA 1 cut(s) 332
AvaI CYCGRG 1 cut(s) 230
AvaII GGWCC 1 cut(s) 357
BaeGI GKGCMC 1 cut(s) 70
BanI GGYRCC 1 cut(s) 235
BbvI GCAGC 1 cut(s) 214
BceAI ACGGC 3 cut(s) 22, 73, 229
BglI GCCNNNNNGGC 2 cut(s) 107, 250
BisI GCNGC 4 cut(s) 14, 28, 31, 203
BlsI GCNGC 4 cut(s) 15, 29, 32, 204
Bme18I GGWCC 1 cut(s) 357
BmeT110I CYCGRG 1 cut(s) 230
BmgT120I GGNCC 3 cut(s) 96, 357, 383
BmiI GGNNCC 1 cut(s) 237
BmsI GCATC 1 cut(s) 361
BpuEI CTTGAG 1 cut(s) 372
BsaJI CCNNGG 2 cut(s) 231, 264
Bsc4I CCNNNNNNNGG 3 cut(s) 40, 93, 143
Bse118I RCCGGY 1 cut(s) 110
BseDI CCNNGG 2 cut(s) 231, 264
BseLI CCNNNNNNNGG 3 cut(s) 40, 93, 143
BseSI GKGCMC 1 cut(s) 70
BseX3I CGGCCG 1 cut(s) 108
BseXI GCAGC 1 cut(s) 214
BseYI CCCAGC 1 cut(s) 69
Bsh1236I CGCG 1 cut(s) 170
Bsh1285I CGRYCG 1 cut(s) 111
BshFI GGCC 7 cut(s) 9, 60, 97, 110, 152, 253, 384
BshNI GGYRCC 1 cut(s) 235
BsiEI CGRYCG 1 cut(s) 111
BsiHKCI CYCGRG 1 cut(s) 230
BsiSI CCGG 1 cut(s) 111
BslFI GGGAC 1 cut(s) 70
BslI CCNNNNNNNGG 3 cut(s) 40, 93, 143
BsmFI GGGAC 1 cut(s) 70
BsnI GGCC 7 cut(s) 9, 60, 97, 110, 152, 253, 384
BsoBI CYCGRG 1 cut(s) 230
Bsp1286I GDGCHC 1 cut(s) 70
Bsp143I GATC 1 cut(s) 216
BspACI CCGC 5 cut(s) 13, 28, 31, 88, 99
BspANI GGCC 7 cut(s) 9, 60, 97, 110, 152, 253, 384
BspFNI CGCG 1 cut(s) 170
BspLI GGNNCC 1 cut(s) 237
BspT107I GGYRCC 1 cut(s) 235
BsrFI RCCGGY 1 cut(s) 110
BssAI RCCGGY 1 cut(s) 110
BssECI CCNNGG 2 cut(s) 231, 264
BssMI GATC 1 cut(s) 216
Bst4CI ACNGT 2 cut(s) 65, 180
BstC8I GCNNGC 4 cut(s) 11, 99, 112, 168
BstFNI CGCG 1 cut(s) 170
BstKTI GATC 1 cut(s) 219
BstMBI GATC 1 cut(s) 216
BstMCI CGRYCG 1 cut(s) 111
BstMWI GCNNNNNNNGC 5 cut(s) 107, 235, 250, 290, 398
BstSLI GKGCMC 1 cut(s) 70
BstUI CGCG 1 cut(s) 170
BstV1I GCAGC 1 cut(s) 214
BstZI CGGCCG 1 cut(s) 108
BsuRI GGCC 7 cut(s) 9, 60, 97, 110, 152, 253, 384
Cac8I GCNNGC 4 cut(s) 11, 99, 112, 168
Cfr10I RCCGGY 1 cut(s) 110
Cfr13I GGNCC 3 cut(s) 96, 357, 383
CseI GACGC 1 cut(s) 159
Csp6I GTAC 1 cut(s) 4
CviQI GTAC 1 cut(s) 4
DpnI GATC 1 cut(s) 218
DpnII GATC 1 cut(s) 216
EaeI YGGCCR 2 cut(s) 58, 108
EagI CGGCCG 1 cut(s) 108
EclXI CGGCCG 1 cut(s) 108
Eco147I AGGCCT 1 cut(s) 253
Eco47I GGWCC 1 cut(s) 357
Eco52I CGGCCG 1 cut(s) 108
Eco88I CYCGRG 1 cut(s) 230
EcoO109I RGGNCCY 1 cut(s) 357
FaiI YATR 4 cut(s) 51, 78, 183, 412
FalI AAGNNNNNCTT 2 cut(s) 309, 341
FaqI GGGAC 1 cut(s) 70
FauI CCCGC 2 cut(s) 95, 106
Fnu4HI GCNGC 4 cut(s) 14, 28, 31, 203
Fsp4HI GCNGC 4 cut(s) 14, 28, 31, 203
GluI GCNGC 4 cut(s) 14, 28, 31, 203
GsaI CCCAGC 1 cut(s) 73
HaeIII GGCC 7 cut(s) 9, 60, 97, 110, 152, 253, 384
HapII CCGG 1 cut(s) 111
HgaI GACGC 1 cut(s) 159
HindIII AAGCTT 1 cut(s) 399
HinfI GANTC 1 cut(s) 305
HpaII CCGG 1 cut(s) 111
HphI GGTGA 1 cut(s) 332
Hpy188I TCNGA 2 cut(s) 43, 310
Hpy99I CGWCG 2 cut(s) 59, 175
HpyAV CCTTC 3 cut(s) 148, 311, 348
HpyCH4III ACNGT 2 cut(s) 65, 180
HpyCH4V TGCA 2 cut(s) 374, 406
HpyF10VI GCNNNNNNNGC 5 cut(s) 107, 235, 250, 290, 398
KroI GCCGGC 1 cut(s) 110
KroNI GCCGGC 1 cut(s) 112
Kzo9I GATC 1 cut(s) 216
LmnI GCTCC 1 cut(s) 281
LpnPI CCDG 5 cut(s) 23, 83, 124, 191, 264
Lsp1109I GCAGC 1 cut(s) 214
LweI GCATC 1 cut(s) 361
MaeIII GTNAC 2 cut(s) 174, 346
MalI GATC 1 cut(s) 218
MboI GATC 1 cut(s) 216
MhlI GDGCHC 1 cut(s) 70
MmeI TCCRAC 1 cut(s) 169
MnlI CCTC 6 cut(s) 113, 163, 226, 259, 264, 396
MroNI GCCGGC 1 cut(s) 110
MroXI GAANNNNTTC 1 cut(s) 122
MseI TTAA 1 cut(s) 363
MspA1I CMGCKG 1 cut(s) 205
MspI CCGG 1 cut(s) 111
MvnI CGCG 1 cut(s) 170
MwoI GCNNNNNNNGC 5 cut(s) 107, 235, 250, 290, 398
NaeI GCCGGC 1 cut(s) 112
NdeII GATC 1 cut(s) 216
NgoMIV GCCGGC 1 cut(s) 110
NlaIV GGNNCC 1 cut(s) 237
NmeAIII GCCGAG 1 cut(s) 86
NmuCI GTSAC 1 cut(s) 174
PceI AGGCCT 1 cut(s) 253
PdiI GCCGGC 1 cut(s) 112
PdmI GAANNNNTTC 1 cut(s) 122
PfeI GAWTC 1 cut(s) 305
PkrI GCNGC 4 cut(s) 15, 29, 32, 204
PpuMI RGGWCCY 1 cut(s) 357
PsiI TTATAA 1 cut(s) 412
Psp5II RGGWCCY 1 cut(s) 357
PspFI CCCAGC 1 cut(s) 69
PspN4I GGNNCC 1 cut(s) 237
PspPI GGNCC 3 cut(s) 96, 357, 383
PspPPI RGGWCCY 1 cut(s) 357
PvuII CAGCTG 1 cut(s) 205
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
SaqAI TTAA 1 cut(s) 363
SatI GCNGC 4 cut(s) 14, 28, 31, 203
Sau3AI GATC 1 cut(s) 216
Sau96I GGNCC 3 cut(s) 96, 357, 383
SduI GDGCHC 1 cut(s) 70
SetI ASST 9 cut(s) 148, 168, 207, 237, 286, 322, 327, 362, 403
SfaNI GCATC 1 cut(s) 361
SinI GGWCC 1 cut(s) 357
SmlI CTYRAG 1 cut(s) 387
SmoI CTYRAG 1 cut(s) 387
SseBI AGGCCT 1 cut(s) 253
SsiI CCGC 5 cut(s) 13, 28, 31, 88, 99
StuI AGGCCT 1 cut(s) 253
TaaI ACNGT 2 cut(s) 65, 180
TaqI TCGA 2 cut(s) 132, 215
TauI GCSGC 3 cut(s) 16, 30, 33
TfiI GAWTC 1 cut(s) 305
Tru1I TTAA 1 cut(s) 363
Tru9I TTAA 1 cut(s) 363
TseFI GTSAC 1 cut(s) 174
TseI GCWGC 1 cut(s) 202
Tsp45I GTSAC 1 cut(s) 174
TspDTI ATGAA 1 cut(s) 115
TspGWI ACGGA 1 cut(s) 208
VpaK11BI GGWCC 1 cut(s) 357
XmnI GAANNNNTTC 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.