Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000239.1

Orthogroup ID

OG0004872

Physical Location & Seq

Genomic Coordinates Forward (+)

159918 .. 161589

Gene Structure 1672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000239.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

atgtacggcctctggcactcccaacgccgccgccaccactcggacaactatgacgacggccaccgtgcccagccctataatctgtcccggaaaaggcccagccctctcagcccggcaagaagcagttcatcatcgaacccttcaaagtttgagctgatcttaattgcaattgggttgaatggagcagcagagaagtatatcagggtcgtcgtagagcccctaaatcgccgccatcgcagctgctactgtcagtctcgtgaaattaggagccaaagccaagcgccaatccgccgccgcttcctcctccgcgccaattcgcttttcttcttcttcttctccgttacgcttctcccctccgacgacgtcgtttactgcttcgtgcttgatcgaccagctcagggccttgagttgatgcctaatgacatgttcaaaagttggttgtccgtggtaaatcaacatgtaagtttacataatgatctgaagacaaagtttatcgaaggagccaaagaacgtaaagaactctacaacaaggtgttagagttgaaaggaaacataagggtcttttgcaggtgtaggcctctaaactctgaggaagtttcagcaggagcttcaatggctattgactttgaatctgagaaagaaggtgagcttgttgtcaagtcaaatggggttacaagaaggacctttaagtttgatgcagttttcggccctcaagcagaccaagctgatgtcttcgaagacacagctccatttgcaacctcagttctagatgggtacaatgtctgcatatttgcttacggacagactgaaagtggaaaaacctttacaatggagggaacggaagaagctcggggagtcaattttaggactcttgagcaactgtttcgtataataaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin Malectin

Protein Analysis

299

Amino Acids

34.23

Weight (kDa)

9.09

Isoelectric Point (pI)

61.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004872)

Species	Orthologous Gene IDs
malus_domestica	MD04G1205200.v1.1
pyrus_communis	pycom03g16180 pycom04g18130
rosa_chinensis	RchiOBHm_Chr2g0147251
rosa_laevigata	RLG00000001747 RLG00000011422 RLG00000027814
rosa_multiflora	Rmu_sc0000239.1_g000021 Rmu_sc0000281.1_g000007 Rmu_sc0012870.1_g000005
rosa_roxburghii	Rroxscaffold_1G00042640 Rroxscaffold_2G00137820 Rroxscaffold_3G00246700 Rroxscaffold_4G00310320 Rroxscaffold_5G00348420
rosa_rugosa	Rorug01G0187600 Rorug03G0334800 Rorug05G0314300 Rorug05G0314400 Rorug05G0314500 Rorug05G0314600 Rorug06G0126800
rosa_samantha	Rh1CG247300 Rh1DG034400 Rh4CG158400 Rh5AG257400 Rh5AG425700 Rh5BG372700 Rh5BG554500 Rh5BG555000 Rh5CG577300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	558
AatII	GACGTC	1 cut(s)	366
Acc36I	ACCTGC	1 cut(s)	558
AccII	CGCG	1 cut(s)	309
AciI	CCGC	7 cut(s)	28, 31, 229, 289, 292, 295, 307
AcoI	YGGCCR	1 cut(s)	58
AcuI	CTGAAG	1 cut(s)	500
AcyI	GRCGYC	1 cut(s)	363
AfaI	GTAC	2 cut(s)	5, 776
AfiI	CCNNNNNNNGG	3 cut(s)	40, 93, 398
AflIII	ACRYGT	2 cut(s)	423, 457
AgsI	TTSAA	6 cut(s)	144, 178, 430, 544, 612, 629
AjuI	GAANNNNNNNTTGG	2 cut(s)	305, 337
AluBI	AGCT	8 cut(s)	154, 240, 395, 608, 649, 725, 746, 848
AluI	AGCT	8 cut(s)	154, 240, 395, 608, 649, 725, 746, 848
Alw26I	GTCTC	1 cut(s)	258
Ama87I	CYCGRG	1 cut(s)	849
AoxI	GGCC	6 cut(s)	7, 58, 95, 400, 575, 706
ApeKI	GCWGC	3 cut(s)	185, 237, 240
Asp700I	GAANNNNTTC	1 cut(s)	124
AspLEI	GCGC	2 cut(s)	283, 311
AspS9I	GGNCC	4 cut(s)	96, 400, 681, 707
AsuC2I	CCSGG	2 cut(s)	88, 113
AsuHPI	GGTGA	1 cut(s)	656
AsuII	TTCGAA	1 cut(s)	735
AvaI	CYCGRG	1 cut(s)	849
AvaII	GGWCC	1 cut(s)	681
BaeGI	GKGCMC	1 cut(s)	70
BanII	GRGCYC	1 cut(s)	219
BauI	CACGAG	1 cut(s)	255
BbsI	GAAGAC	3 cut(s)	488, 724, 744
BbvI	GCAGC	3 cut(s)	197, 227, 249
BccI	CCATC	2 cut(s)	240, 764
BceAI	ACGGC	2 cut(s)	22, 73
BcgI	CGANNNNNNTGC	2 cut(s)	866, 900
BcnI	CCSGG	2 cut(s)	88, 113
BcoDI	GTCTC	1 cut(s)	258
BfaI	CTAG	1 cut(s)	767
BfoI	RGCGCY	1 cut(s)	284
BfuAI	ACCTGC	1 cut(s)	558
BisI	GCNGC	8 cut(s)	28, 31, 186, 229, 238, 241, 292, 295
BlsI	GCNGC	8 cut(s)	29, 32, 187, 230, 239, 242, 293, 296
Bme1390I	CCNGG	2 cut(s)	88, 113
Bme18I	GGWCC	1 cut(s)	681
BmeT110I	CYCGRG	1 cut(s)	849
BmgT120I	GGNCC	4 cut(s)	96, 400, 681, 707
BmiI	GGNNCC	2 cut(s)	269, 502
BmrFI	CCNGG	2 cut(s)	88, 113
BmsI	GCATC	2 cut(s)	402, 685
BpiI	GAAGAC	3 cut(s)	488, 724, 744
Bpu10I	CCTNAGC	1 cut(s)	396
Bpu14I	TTCGAA	1 cut(s)	735
BpuEI	CTTGAG	3 cut(s)	425, 696, 893
BpuMI	CCSGG	2 cut(s)	88, 113
BsaHI	GRCGYC	1 cut(s)	363
BsaJI	CCNNGG	1 cut(s)	444
Bsc4I	CCNNNNNNNGG	3 cut(s)	40, 93, 398
BseDI	CCNNGG	1 cut(s)	444
BseLI	CCNNNNNNNGG	3 cut(s)	40, 93, 398
BseMII	CTCAG	5 cut(s)	121, 410, 579, 624, 774
BseRI	GAGGAG	1 cut(s)	293
BseSI	GKGCMC	1 cut(s)	70
BseXI	GCAGC	3 cut(s)	197, 227, 249
BseYI	CCCAGC	2 cut(s)	69, 98
Bsh1236I	CGCG	1 cut(s)	309
BshFI	GGCC	6 cut(s)	9, 60, 97, 402, 577, 708
BsiHKCI	CYCGRG	1 cut(s)	849
BsiSI	CCGG	2 cut(s)	88, 113
BslFI	GGGAC	1 cut(s)	70
BslI	CCNNNNNNNGG	3 cut(s)	40, 93, 398
BsmAI	GTCTC	1 cut(s)	258
BsmFI	GGGAC	1 cut(s)	70
BsnI	GGCC	6 cut(s)	9, 60, 97, 402, 577, 708
BsoBI	CYCGRG	1 cut(s)	849
Bsp119I	TTCGAA	1 cut(s)	735
Bsp1286I	GDGCHC	2 cut(s)	70, 219
Bsp143I	GATC	3 cut(s)	156, 385, 475
BspACI	CCGC	7 cut(s)	28, 31, 229, 289, 292, 295, 307
BspANI	GGCC	6 cut(s)	9, 60, 97, 402, 577, 708
BspCNI	CTCAG	5 cut(s)	120, 409, 580, 625, 773
BspFNI	CGCG	1 cut(s)	309
BspLI	GGNNCC	2 cut(s)	269, 502
BspMI	ACCTGC	1 cut(s)	558
BspT104I	TTCGAA	1 cut(s)	735
BssECI	CCNNGG	1 cut(s)	444
BssMI	GATC	3 cut(s)	156, 385, 475
BssNI	GRCGYC	1 cut(s)	363
BssSI	CACGAG	1 cut(s)	255
Bst2BI	CACGAG	1 cut(s)	255
Bst4CI	ACNGT	3 cut(s)	65, 248, 882
BstACI	GRCGYC	1 cut(s)	363
BstBI	TTCGAA	1 cut(s)	735
BstDEI	CTNAG	5 cut(s)	107, 396, 588, 633, 760
BstDSI	CCRYGG	1 cut(s)	444
BstFNI	CGCG	1 cut(s)	309
BstH2I	RGCGCY	1 cut(s)	284
BstHHI	GCGC	2 cut(s)	283, 311
BstKTI	GATC	3 cut(s)	159, 388, 478
BstMAI	GTCTC	1 cut(s)	258
BstMBI	GATC	3 cut(s)	156, 385, 475
BstMWI	GCNNNNNNNGC	6 cut(s)	108, 234, 237, 614, 722, 752
BstNSI	RCATGY	2 cut(s)	427, 461
BstSCI	CCNGG	2 cut(s)	86, 111
BstSLI	GKGCMC	1 cut(s)	70
BstUI	CGCG	1 cut(s)	309
BstV1I	GCAGC	3 cut(s)	197, 227, 249
BstV2I	GAAGAC	3 cut(s)	488, 724, 744
BsuRI	GGCC	6 cut(s)	9, 60, 97, 402, 577, 708
BtgI	CCRYGG	1 cut(s)	444
BtgZI	GCGATG	1 cut(s)	218
BveI	ACCTGC	1 cut(s)	558
CfoI	GCGC	2 cut(s)	283, 311
Cfr13I	GGNCC	4 cut(s)	96, 400, 681, 707
Csp6I	GTAC	2 cut(s)	4, 775
CviAII	CATG	2 cut(s)	424, 458
CviQI	GTAC	2 cut(s)	4, 775
DdeI	CTNAG	5 cut(s)	107, 396, 588, 633, 760
DpnI	GATC	3 cut(s)	158, 387, 477
DpnII	GATC	3 cut(s)	156, 385, 475
EaeI	YGGCCR	1 cut(s)	58
EciI	GGCGGA	1 cut(s)	278
Eco147I	AGGCCT	1 cut(s)	577
Eco24I	GRGCYC	1 cut(s)	219
Eco47I	GGWCC	1 cut(s)	681
Eco57I	CTGAAG	1 cut(s)	500
Eco88I	CYCGRG	1 cut(s)	849
EcoO109I	RGGNCCY	2 cut(s)	400, 681
EcoT38I	GRGCYC	1 cut(s)	219
FaeI	CATG	2 cut(s)	427, 461
FaiI	YATR	9 cut(s)	51, 78, 198, 425, 459, 471, 554, 788, 890
FalI	AAGNNNNNCTT	2 cut(s)	633, 665
FaqI	GGGAC	1 cut(s)	70
FatI	CATG	2 cut(s)	423, 457
Fnu4HI	GCNGC	8 cut(s)	28, 31, 186, 229, 238, 241, 292, 295
FriOI	GRGCYC	1 cut(s)	219
Fsp4HI	GCNGC	8 cut(s)	28, 31, 186, 229, 238, 241, 292, 295
FspBI	CTAG	1 cut(s)	767
GlaI	GCGC	2 cut(s)	282, 310
GluI	GCNGC	8 cut(s)	28, 31, 186, 229, 238, 241, 292, 295
GsaI	CCCAGC	2 cut(s)	73, 102
HaeII	RGCGCY	1 cut(s)	284
HaeIII	GGCC	6 cut(s)	9, 60, 97, 402, 577, 708
HapII	CCGG	2 cut(s)	88, 113
HhaI	GCGC	2 cut(s)	283, 311
Hin1I	GRCGYC	1 cut(s)	363
Hin1II	CATG	2 cut(s)	427, 461
Hin6I	GCGC	2 cut(s)	281, 309
HinP1I	GCGC	2 cut(s)	281, 309
HinfI	GANTC	3 cut(s)	629, 855, 868
HpaII	CCGG	2 cut(s)	88, 113
HphI	GGTGA	1 cut(s)	656
Hpy166II	GTNNAC	2 cut(s)	370, 467
Hpy188I	TCNGA	5 cut(s)	43, 358, 480, 589, 634
Hpy188III	TCNNGA	3 cut(s)	257, 767, 872
Hpy8I	GTNNAC	2 cut(s)	370, 467
Hpy99I	CGWCG	5 cut(s)	59, 212, 362, 365, 368
HpyAV	CCTTC	4 cut(s)	150, 491, 635, 672
HpyCH4III	ACNGT	3 cut(s)	65, 248, 882
HpyCH4IV	ACGT	2 cut(s)	363, 511
HpyCH4V	TGCA	5 cut(s)	167, 567, 698, 755, 786
HpyF10VI	GCNNNNNNNGC	6 cut(s)	108, 234, 237, 614, 722, 752
HpyF3I	CTNAG	5 cut(s)	107, 396, 588, 633, 760
HpySE526I	ACGT	2 cut(s)	363, 511
Hsp92I	GRCGYC	1 cut(s)	363
Hsp92II	CATG	2 cut(s)	427, 461
HspAI	GCGC	2 cut(s)	281, 309
Kzo9I	GATC	3 cut(s)	156, 385, 475
LmnI	GCTCC	5 cut(s)	182, 267, 500, 605, 751
LpnPI	CCDG	9 cut(s)	83, 101, 112, 126, 187, 383, 405, 553, 588
Lsp1109I	GCAGC	3 cut(s)	197, 227, 249
LweI	GCATC	2 cut(s)	402, 685
MaeI	CTAG	1 cut(s)	767
MaeII	ACGT	2 cut(s)	363, 511
MaeIII	GTNAC	2 cut(s)	340, 670
MalI	GATC	3 cut(s)	158, 387, 477
MboI	GATC	3 cut(s)	156, 385, 475
MboII	GAAGA	8 cut(s)	316, 319, 322, 325, 493, 724, 749, 854
MfeI	CAATTG	1 cut(s)	168
MhlI	GDGCHC	2 cut(s)	70, 219
MluCI	AATT	5 cut(s)	162, 168, 261, 313, 859
MlyI	GAGTC	2 cut(s)	862, 864
MmeI	TCCRAC	1 cut(s)	381
MroXI	GAANNNNTTC	1 cut(s)	124
MseI	TTAA	2 cut(s)	161, 687
MspA1I	CMGCKG	1 cut(s)	240
MspI	CCGG	2 cut(s)	88, 113
MspR9I	CCNGG	2 cut(s)	88, 113
MunI	CAATTG	1 cut(s)	168
MvnI	CGCG	1 cut(s)	309
MwoI	GCNNNNNNNGC	6 cut(s)	108, 234, 237, 614, 722, 752
NciI	CCSGG	2 cut(s)	88, 113
NdeII	GATC	3 cut(s)	156, 385, 475
NlaIII	CATG	2 cut(s)	427, 461
NlaIV	GGNNCC	2 cut(s)	269, 502
NspI	RCATGY	2 cut(s)	427, 461
NspV	TTCGAA	1 cut(s)	735
PaqCI	CACCTGC	1 cut(s)	558
PceI	AGGCCT	1 cut(s)	577
PciI	ACATGT	2 cut(s)	423, 457
PdmI	GAANNNNTTC	1 cut(s)	124
PfeI	GAWTC	1 cut(s)	629
PflFI	GACNNNGTC	1 cut(s)	362
PfoI	TCCNGGA	1 cut(s)	86
PkrI	GCNGC	8 cut(s)	29, 32, 187, 230, 239, 242, 293, 296
PleI	GAGTC	2 cut(s)	862, 863
PpsI	GAGTC	2 cut(s)	862, 863
PpuMI	RGGWCCY	1 cut(s)	681
PscI	ACATGT	2 cut(s)	423, 457
Psp5II	RGGWCCY	1 cut(s)	681
PspFI	CCCAGC	2 cut(s)	69, 98
PspN4I	GGNNCC	2 cut(s)	269, 502
PspPI	GGNCC	4 cut(s)	96, 400, 681, 707
PspPPI	RGGWCCY	1 cut(s)	681
PsyI	GACNNNGTC	1 cut(s)	362
PvuII	CAGCTG	1 cut(s)	240
RsaI	GTAC	2 cut(s)	5, 776
RsaNI	GTAC	2 cut(s)	4, 775
SaqAI	TTAA	2 cut(s)	161, 687
SatI	GCNGC	8 cut(s)	28, 31, 186, 229, 238, 241, 292, 295
Sau3AI	GATC	3 cut(s)	156, 385, 475
Sau96I	GGNCC	4 cut(s)	96, 400, 681, 707
SchI	GAGTC	2 cut(s)	862, 864
ScrFI	CCNGG	2 cut(s)	88, 113
SduI	GDGCHC	2 cut(s)	70, 219
SfaNI	GCATC	2 cut(s)	402, 685
SfuI	TTCGAA	1 cut(s)	735
SinI	GGWCC	1 cut(s)	681
SmlI	CTYRAG	3 cut(s)	404, 711, 872
SmoI	CTYRAG	3 cut(s)	404, 711, 872
Sse9I	AATT	5 cut(s)	162, 168, 261, 313, 859
SseBI	AGGCCT	1 cut(s)	577
SsiI	CCGC	7 cut(s)	28, 31, 229, 289, 292, 295, 307
SspMI	CTAG	1 cut(s)	767
StuI	AGGCCT	1 cut(s)	577
StyD4I	CCNGG	2 cut(s)	86, 111
TaaI	ACNGT	3 cut(s)	65, 248, 882
TaiI	ACGT	2 cut(s)	366, 514
TaqI	TCGA	4 cut(s)	134, 388, 495, 735
TasI	AATT	5 cut(s)	162, 168, 261, 313, 859
TauI	GCSGC	5 cut(s)	30, 33, 231, 294, 297
TfiI	GAWTC	1 cut(s)	629
Tru1I	TTAA	2 cut(s)	161, 687
Tru9I	TTAA	2 cut(s)	161, 687
TseI	GCWGC	3 cut(s)	185, 237, 240
TspDTI	ATGAA	1 cut(s)	117
TspGWI	ACGGA	4 cut(s)	328, 433, 813, 854
Tth111I	GACNNNGTC	1 cut(s)	362
VpaK11BI	GGWCC	1 cut(s)	681
XbaI	TCTAGA	1 cut(s)	766
XceI	RCATGY	2 cut(s)	427, 461
XmnI	GAANNNNTTC	1 cut(s)	124
XspI	CTAG	1 cut(s)	767
ZraI	GACGTC	1 cut(s)	364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.