Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004872

Physical Location & Seq

Genomic Coordinates Reverse (-)

37317078 .. 37319466

Gene Structure 2389 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0314500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGAAGATCGCCGACGTCAAGGACTGGACGGAGGTCGGAGCTCTGACGGAGGCGTTGAAGGACCAGAAGGTTCTGATACGCGGCCGCACGCAGACGATCCGAGCCTTGAGAAAGGTGGCGTTTATTGTGGTCAGAAAGAAGGGGTTCACGGTTACCCGAAGGAAGAATAAAACGAGACAGGAAGCCCTCATTATTATTATAATTTGGACAATCATATCCATCTGTTCAAGGGAAGTAGCGCAAGGTGGAGAGATTCCTCCTGAGATCGGAAAGATGAGCAGCTTGGAAGTTTTTGTTGGATCTTTTGGATTGCTTGCTTTTGGTTCAGACAGTTTTGTGATTTGTACTGTAATCGGTTTTCCAGGTTTCATGCTTTGTGCAGGATCACAACTTCTGGACCTTCATAGTGTGAGTTCATATCTACAGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

143

Amino Acids

15.79

Weight (kDa)

9.67

Isoelectric Point (pI)

35.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004872)

Species	Orthologous Gene IDs
malus_domestica	MD04G1205200.v1.1
pyrus_communis	pycom03g16180 pycom04g18130
rosa_chinensis	RchiOBHm_Chr2g0147251
rosa_laevigata	RLG00000001747 RLG00000011422 RLG00000027814
rosa_multiflora	Rmu_sc0000239.1_g000021 Rmu_sc0000281.1_g000007 Rmu_sc0012870.1_g000005
rosa_roxburghii	Rroxscaffold_1G00042640 Rroxscaffold_2G00137820 Rroxscaffold_3G00246700 Rroxscaffold_4G00310320 Rroxscaffold_5G00348420
rosa_rugosa	Rorug01G0187600 Rorug03G0334800 Rorug05G0314300 Rorug05G0314400 Rorug05G0314500 Rorug05G0314600 Rorug06G0126800
rosa_samantha	Rh1CG247300 Rh1DG034400 Rh4CG158400 Rh5AG257400 Rh5AG425700 Rh5BG372700 Rh5BG554500 Rh5BG555000 Rh5CG577300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	200
AatII	GACGTC	1 cut(s)	18
AccII	CGCG	1 cut(s)	81
AciI	CCGC	2 cut(s)	81, 85
AclWI	GGATC	3 cut(s)	91, 307, 391
AcoI	YGGCCR	1 cut(s)	82
AcyI	GRCGYC	1 cut(s)	15
AfaI	GTAC	1 cut(s)	346
AfiI	CCNNNNNNNGG	1 cut(s)	266
AgsI	TTSAA	2 cut(s)	58, 228
AjnI	CCWGG	1 cut(s)	361
AjuI	GAANNNNNNNTTGG	2 cut(s)	279, 311
AluBI	AGCT	2 cut(s)	41, 282
AluI	AGCT	2 cut(s)	41, 282
Alw21I	GWGCWC	1 cut(s)	43
Alw26I	GTCTC	1 cut(s)	169
AlwI	GGATC	3 cut(s)	91, 307, 391
AoxI	GGCC	1 cut(s)	82
ApeKI	GCWGC	1 cut(s)	279
Asp700I	GAANNNNTTC	1 cut(s)	143
AspLEI	GCGC	1 cut(s)	241
AspS9I	GGNCC	2 cut(s)	61, 397
AvaII	GGWCC	2 cut(s)	61, 397
BanII	GRGCYC	1 cut(s)	43
Bbv12I	GWGCWC	1 cut(s)	43
BbvI	GCAGC	1 cut(s)	291
BccI	CCATC	1 cut(s)	227
BciT130I	CCWGG	1 cut(s)	363
BcoDI	GTCTC	1 cut(s)	169
BfmI	CTRYAG	1 cut(s)	422
BisI	GCNGC	3 cut(s)	82, 85, 280
BlsI	GCNGC	3 cut(s)	83, 86, 281
Bme1390I	CCNGG	1 cut(s)	363
Bme18I	GGWCC	2 cut(s)	61, 397
BmgT120I	GGNCC	2 cut(s)	61, 397
BmrFI	CCNGG	1 cut(s)	363
BoxI	GACNNNNGTC	1 cut(s)	32
BpuEI	CTTGAG	1 cut(s)	127
BsaHI	GRCGYC	1 cut(s)	15
Bsc4I	CCNNNNNNNGG	1 cut(s)	266
Bse1I	ACTGG	1 cut(s)	29
BseBI	CCWGG	1 cut(s)	363
BseLI	CCNNNNNNNGG	1 cut(s)	266
BseMII	CTCAG	1 cut(s)	252
BseNI	ACTGG	1 cut(s)	29
BseX3I	CGGCCG	1 cut(s)	82
BseXI	GCAGC	1 cut(s)	291
BsgI	GTGCAG	1 cut(s)	399
Bsh1236I	CGCG	1 cut(s)	81
Bsh1285I	CGRYCG	1 cut(s)	85
BshFI	GGCC	1 cut(s)	84
BsiEI	CGRYCG	1 cut(s)	85
BsiHKAI	GWGCWC	1 cut(s)	43
BslI	CCNNNNNNNGG	1 cut(s)	266
BsmAI	GTCTC	1 cut(s)	169
BsnI	GGCC	1 cut(s)	84
Bsp1286I	GDGCHC	1 cut(s)	43
Bsp143I	GATC	5 cut(s)	6, 96, 264, 299, 383
BspACI	CCGC	2 cut(s)	81, 85
BspANI	GGCC	1 cut(s)	84
BspCNI	CTCAG	1 cut(s)	253
BspFNI	CGCG	1 cut(s)	81
BspPI	GGATC	3 cut(s)	91, 307, 391
BsrI	ACTGG	1 cut(s)	29
BssMI	GATC	5 cut(s)	6, 96, 264, 299, 383
BssNI	GRCGYC	1 cut(s)	15
Bst2UI	CCWGG	1 cut(s)	363
Bst4CI	ACNGT	3 cut(s)	151, 332, 349
BstACI	GRCGYC	1 cut(s)	15
BstC8I	GCNNGC	2 cut(s)	89, 315
BstDEI	CTNAG	1 cut(s)	261
BstEII	GGTNACC	1 cut(s)	151
BstFNI	CGCG	1 cut(s)	81
BstHHI	GCGC	1 cut(s)	241
BstKTI	GATC	5 cut(s)	9, 99, 267, 302, 386
BstMAI	GTCTC	1 cut(s)	169
BstMBI	GATC	5 cut(s)	6, 96, 264, 299, 383
BstMCI	CGRYCG	1 cut(s)	85
BstNI	CCWGG	1 cut(s)	363
BstPAI	GACNNNNGTC	1 cut(s)	32
BstPI	GGTNACC	1 cut(s)	151
BstSCI	CCNGG	1 cut(s)	361
BstSFI	CTRYAG	1 cut(s)	422
BstUI	CGCG	1 cut(s)	81
BstV1I	GCAGC	1 cut(s)	291
BstX2I	RGATCY	1 cut(s)	299
BstYI	RGATCY	1 cut(s)	299
BstZI	CGGCCG	1 cut(s)	82
BsuRI	GGCC	1 cut(s)	84
Cac8I	GCNNGC	2 cut(s)	89, 315
CciNI	GCGGCCGC	1 cut(s)	82
CfoI	GCGC	1 cut(s)	241
Cfr13I	GGNCC	2 cut(s)	61, 397
Csp6I	GTAC	1 cut(s)	345
CviAII	CATG	1 cut(s)	370
CviJI	RGCY	5 cut(s)	41, 84, 104, 185, 282
CviKI_1	RGCY	5 cut(s)	41, 84, 104, 185, 282
CviQI	GTAC	1 cut(s)	345
DdeI	CTNAG	1 cut(s)	261
DpnI	GATC	5 cut(s)	8, 98, 266, 301, 385
DpnII	GATC	5 cut(s)	6, 96, 264, 299, 383
EaeI	YGGCCR	1 cut(s)	82
EagI	CGGCCG	1 cut(s)	82
Ecl136II	GAGCTC	1 cut(s)	41
EclXI	CGGCCG	1 cut(s)	82
Eco24I	GRGCYC	1 cut(s)	43
Eco47I	GGWCC	2 cut(s)	61, 397
Eco52I	CGGCCG	1 cut(s)	82
Eco53kI	GAGCTC	1 cut(s)	41
Eco91I	GGTNACC	1 cut(s)	151
EcoICRI	GAGCTC	1 cut(s)	41
EcoO65I	GGTNACC	1 cut(s)	151
EcoRII	CCWGG	1 cut(s)	361
EcoT38I	GRGCYC	1 cut(s)	43
FaeI	CATG	1 cut(s)	373
FaiI	YATR	5 cut(s)	200, 215, 371, 405, 418
FatI	CATG	1 cut(s)	369
Fnu4HI	GCNGC	3 cut(s)	82, 85, 280
FriOI	GRGCYC	1 cut(s)	43
Fsp4HI	GCNGC	3 cut(s)	82, 85, 280
GlaI	GCGC	1 cut(s)	240
GluI	GCNGC	3 cut(s)	82, 85, 280
HaeIII	GGCC	1 cut(s)	84
HhaI	GCGC	1 cut(s)	241
Hin1I	GRCGYC	1 cut(s)	15
Hin1II	CATG	1 cut(s)	373
Hin6I	GCGC	1 cut(s)	239
HinP1I	GCGC	1 cut(s)	239
HinfI	GANTC	1 cut(s)	253
Hpy166II	GTNNAC	1 cut(s)	147
Hpy188I	TCNGA	7 cut(s)	38, 45, 75, 101, 134, 269, 328
Hpy188III	TCNNGA	2 cut(s)	260, 395
Hpy8I	GTNNAC	1 cut(s)	147
Hpy99I	CGWCG	1 cut(s)	17
HpyAV	CCTTC	5 cut(s)	52, 61, 133, 153, 410
HpyCH4III	ACNGT	3 cut(s)	151, 332, 349
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	1 cut(s)	380
HpyF3I	CTNAG	1 cut(s)	261
HpySE526I	ACGT	1 cut(s)	15
Hsp92I	GRCGYC	1 cut(s)	15
Hsp92II	CATG	1 cut(s)	373
HspAI	GCGC	1 cut(s)	239
Kzo9I	GATC	5 cut(s)	6, 96, 264, 299, 383
LmnI	GCTCC	1 cut(s)	38
LpnPI	CCDG	8 cut(s)	10, 77, 164, 273, 348, 366, 375, 380
Lsp1109I	GCAGC	1 cut(s)	291
MaeII	ACGT	1 cut(s)	15
MaeIII	GTNAC	1 cut(s)	151
MalI	GATC	5 cut(s)	8, 98, 266, 301, 385
MboI	GATC	5 cut(s)	6, 96, 264, 299, 383
MboII	GAAGA	2 cut(s)	16, 175
MflI	RGATCY	1 cut(s)	299
MhlI	GDGCHC	1 cut(s)	43
MluCI	AATT	1 cut(s)	201
MmeI	TCCRAC	2 cut(s)	16, 277
MnlI	CCTC	4 cut(s)	25, 43, 197, 267
MroXI	GAANNNNTTC	1 cut(s)	143
MspR9I	CCNGG	1 cut(s)	363
MvaI	CCWGG	1 cut(s)	363
MvnI	CGCG	1 cut(s)	81
NdeII	GATC	5 cut(s)	6, 96, 264, 299, 383
NlaIII	CATG	1 cut(s)	373
NotI	GCGGCCGC	1 cut(s)	82
PdmI	GAANNNNTTC	1 cut(s)	143
PfeI	GAWTC	1 cut(s)	253
PkrI	GCNGC	3 cut(s)	83, 86, 281
PshAI	GACNNNNGTC	1 cut(s)	32
PsiI	TTATAA	1 cut(s)	200
Psp124BI	GAGCTC	1 cut(s)	43
Psp6I	CCWGG	1 cut(s)	361
PspEI	GGTNACC	1 cut(s)	151
PspGI	CCWGG	1 cut(s)	361
PspPI	GGNCC	2 cut(s)	61, 397
PsuI	RGATCY	1 cut(s)	299
RsaI	GTAC	1 cut(s)	346
RsaNI	GTAC	1 cut(s)	345
SacI	GAGCTC	1 cut(s)	43
SatI	GCNGC	3 cut(s)	82, 85, 280
Sau3AI	GATC	5 cut(s)	6, 96, 264, 299, 383
Sau96I	GGNCC	2 cut(s)	61, 397
ScrFI	CCNGG	1 cut(s)	363
SduI	GDGCHC	1 cut(s)	43
SetI	ASST	9 cut(s)	18, 36, 43, 72, 117, 247, 284, 367, 402
SfcI	CTRYAG	1 cut(s)	422
SinI	GGWCC	2 cut(s)	61, 397
SmlI	CTYRAG	1 cut(s)	106
SmoI	CTYRAG	1 cut(s)	106
Sse9I	AATT	1 cut(s)	201
SsiI	CCGC	2 cut(s)	81, 85
SstI	GAGCTC	1 cut(s)	43
StyD4I	CCNGG	1 cut(s)	361
TaaI	ACNGT	3 cut(s)	151, 332, 349
TaiI	ACGT	1 cut(s)	18
TasI	AATT	1 cut(s)	201
TatI	WGTACW	1 cut(s)	344
TauI	GCSGC	2 cut(s)	84, 87
TfiI	GAWTC	1 cut(s)	253
TseI	GCWGC	1 cut(s)	279
TspDTI	ATGAA	4 cut(s)	17, 358, 392, 405
TspGWI	ACGGA	2 cut(s)	44, 62
VpaK11BI	GGWCC	2 cut(s)	61, 397
XmnI	GAANNNNTTC	1 cut(s)	143
ZraI	GACGTC	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.