Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004872

Physical Location & Seq

Genomic Coordinates Forward (+)

75816701 .. 75830767

Gene Structure 14067 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00137820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGACGGCCTGCGGCTCTCCCAACGCCGCCACCACCACTTGGACAAATATGACGACAGCCGCCGTGCCCAGCCCTATAATATGTCCCGCAAAAAGGCCCGGCCCCTCGGCCGGGCAAGAAGCAGTTCATCATCGAACCCTTCAAAGGTTTGGCCTCAATCCCAAAGCTCGCGTCTGTCACGCTTTGGAGCGAGATACATTTATTTGGGTGATTCACCGGGTTTGGGTGATTCACCAAATTTCCATACCAGTTCAAACATTCAAGATCTGGGAGCAGATATATTTAAAGATTTAGTACTACTTGAACCAAATGTCCAGTTGATGCTTATGTCTTCAAGTTTCTCACCCGAGATGTTAAGGATGACAAGTTACCCACAAGTCTGCACAAGACTAAAGGATGCCAAAGACGAGCTCTCAATGAAAAATCGAATAACGCAGATGCGGCTACTCTACGCAACTCGATCACCTTCCGATTTCCTGGACCTATCCGCATGGCGCGACGGCTTCGGCGCCGCCGCCGTGGAGCCGGAAGACGACCTCCTCCTCAAGAACGCCATCGAGCGCTTGCCGAAGGAGCGGTCGATTCTCCCTCAAATTCACGGTGGGAGATTTGCGGGAGCGGTGGCACGCTCGCTCTACGACGCCGACGTGTCGCTTGAACTTTCCCCAAATTTTTCGTCACGGCGCGTTACAGCTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

233

Amino Acids

26.29

Weight (kDa)

9.74

Isoelectric Point (pI)

73.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004872)

Species	Orthologous Gene IDs
malus_domestica	MD04G1205200.v1.1
pyrus_communis	pycom03g16180 pycom04g18130
rosa_chinensis	RchiOBHm_Chr2g0147251
rosa_laevigata	RLG00000001747 RLG00000011422 RLG00000027814
rosa_multiflora	Rmu_sc0000239.1_g000021 Rmu_sc0000281.1_g000007 Rmu_sc0012870.1_g000005
rosa_roxburghii	Rroxscaffold_1G00042640 Rroxscaffold_2G00137820 Rroxscaffold_3G00246700 Rroxscaffold_4G00310320 Rroxscaffold_5G00348420
rosa_rugosa	Rorug01G0187600 Rorug03G0334800 Rorug05G0314300 Rorug05G0314400 Rorug05G0314500 Rorug05G0314600 Rorug06G0126800
rosa_samantha	Rh1CG247300 Rh1DG034400 Rh4CG158400 Rh5AG257400 Rh5AG425700 Rh5BG372700 Rh5BG554500 Rh5BG555000 Rh5CG577300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	509
AccB7I	CCANNNNNTGG	1 cut(s)	40
AccBSI	CCGCTC	2 cut(s)	577, 620
AccII	CGCG	3 cut(s)	172, 498, 687
AcoI	YGGCCR	1 cut(s)	109
AcsI	RAATTY	3 cut(s)	238, 594, 670
AcyI	GRCGYC	2 cut(s)	510, 642
AfaI	GTAC	1 cut(s)	297
AfeI	AGCGCT	1 cut(s)	563
AfiI	CCNNNNNNNGG	6 cut(s)	40, 94, 111, 112, 145, 224
AflIII	ACRYGT	1 cut(s)	648
AgsI	TTSAA	6 cut(s)	144, 255, 263, 305, 336, 659
AjiI	CACGTC	1 cut(s)	649
AjnI	CCWGG	1 cut(s)	477
AloI	GAACNNNNNNTCC	2 cut(s)	297, 329
AluBI	AGCT	3 cut(s)	168, 412, 695
AluI	AGCT	3 cut(s)	168, 412, 695
Alw21I	GWGCWC	1 cut(s)	414
Ama87I	CYCGRG	1 cut(s)	347
Aor51HI	AGCGCT	1 cut(s)	563
AoxI	GGCC	5 cut(s)	7, 96, 101, 109, 152
ApoI	RAATTY	3 cut(s)	238, 594, 670
ArsI	GACNNNNNNTTYG	6 cut(s)	157, 189, 563, 595, 662, 694
Asp700I	GAANNNNTTC	1 cut(s)	124
AspLEI	GCGC	4 cut(s)	498, 512, 564, 687
AspS9I	GGNCC	3 cut(s)	97, 102, 481
AsuC2I	CCSGG	3 cut(s)	100, 113, 219
AsuHPI	GGTGA	6 cut(s)	207, 221, 225, 239, 336, 456
AvaI	CYCGRG	1 cut(s)	347
AvaII	GGWCC	1 cut(s)	481
BaeGI	GKGCMC	1 cut(s)	70
BanI	GGYRCC	1 cut(s)	509
BanII	GRGCYC	1 cut(s)	414
BbsI	GAAGAC	2 cut(s)	324, 537
Bbv12I	GWGCWC	1 cut(s)	414
BccI	CCATC	1 cut(s)	563
BceAI	ACGGC	5 cut(s)	22, 48, 503, 517, 698
BciT130I	CCWGG	1 cut(s)	479
BcnI	CCSGG	3 cut(s)	100, 113, 219
BfoI	RGCGCY	2 cut(s)	513, 565
BglII	AGATCT	1 cut(s)	265
BisI	GCNGC	6 cut(s)	14, 28, 61, 443, 513, 516
BlsI	GCNGC	6 cut(s)	15, 29, 62, 444, 514, 517
BmcAI	AGTACT	1 cut(s)	297
Bme1390I	CCNGG	4 cut(s)	100, 113, 219, 479
Bme18I	GGWCC	1 cut(s)	481
BmeT110I	CYCGRG	1 cut(s)	347
BmgBI	CACGTC	1 cut(s)	649
BmgT120I	GGNCC	3 cut(s)	97, 102, 481
BmiI	GGNNCC	3 cut(s)	104, 511, 525
BmrFI	CCNGG	4 cut(s)	100, 113, 219, 479
BmsI	GCATC	3 cut(s)	312, 388, 429
BpiI	GAAGAC	2 cut(s)	324, 537
BpuEI	CTTGAG	1 cut(s)	530
BpuMI	CCSGG	3 cut(s)	100, 113, 219
BsaHI	GRCGYC	2 cut(s)	510, 642
BsaJI	CCNNGG	2 cut(s)	106, 519
Bsc4I	CCNNNNNNNGG	6 cut(s)	40, 94, 111, 112, 145, 224
Bse1I	ACTGG	2 cut(s)	249, 316
BseBI	CCWGG	1 cut(s)	479
BseDI	CCNNGG	2 cut(s)	106, 519
BseGI	GGATG	2 cut(s)	366, 403
BseLI	CCNNNNNNNGG	6 cut(s)	40, 94, 111, 112, 145, 224
BseNI	ACTGG	2 cut(s)	249, 316
BseRI	GAGGAG	2 cut(s)	530, 533
BseSI	GKGCMC	1 cut(s)	70
BseX3I	CGGCCG	1 cut(s)	109
BseYI	CCCAGC	1 cut(s)	69
BsgI	GTGCAG	1 cut(s)	367
Bsh1236I	CGCG	3 cut(s)	172, 498, 687
Bsh1285I	CGRYCG	2 cut(s)	112, 581
BshFI	GGCC	5 cut(s)	9, 98, 103, 111, 154
BshNI	GGYRCC	1 cut(s)	509
BsiEI	CGRYCG	2 cut(s)	112, 581
BsiHKAI	GWGCWC	1 cut(s)	414
BsiHKCI	CYCGRG	1 cut(s)	347
BsiSI	CCGG	4 cut(s)	100, 112, 218, 527
BslFI	GGGAC	1 cut(s)	70
BslI	CCNNNNNNNGG	6 cut(s)	40, 94, 111, 112, 145, 224
BsmFI	GGGAC	1 cut(s)	70
BsnI	GGCC	5 cut(s)	9, 98, 103, 111, 154
BsoBI	CYCGRG	1 cut(s)	347
Bsp1286I	GDGCHC	2 cut(s)	70, 414
Bsp143I	GATC	2 cut(s)	265, 461
BspANI	GGCC	5 cut(s)	9, 98, 103, 111, 154
BspFNI	CGCG	3 cut(s)	172, 498, 687
BspLI	GGNNCC	3 cut(s)	104, 511, 525
BspT107I	GGYRCC	1 cut(s)	509
BsrBI	CCGCTC	2 cut(s)	577, 620
BsrI	ACTGG	2 cut(s)	249, 316
BssECI	CCNNGG	2 cut(s)	106, 519
BssMI	GATC	2 cut(s)	265, 461
BssNI	GRCGYC	2 cut(s)	510, 642
Bst2UI	CCWGG	1 cut(s)	479
Bst4CI	ACNGT	1 cut(s)	602
BstACI	GRCGYC	2 cut(s)	510, 642
BstC8I	GCNNGC	5 cut(s)	11, 170, 566, 628, 632
BstDSI	CCRYGG	1 cut(s)	519
BstF5I	GGATG	2 cut(s)	366, 403
BstFNI	CGCG	3 cut(s)	172, 498, 687
BstH2I	RGCGCY	2 cut(s)	513, 565
BstHHI	GCGC	4 cut(s)	498, 512, 564, 687
BstKTI	GATC	2 cut(s)	268, 464
BstMBI	GATC	2 cut(s)	265, 461
BstMCI	CGRYCG	2 cut(s)	112, 581
BstMWI	GCNNNNNNNGC	2 cut(s)	442, 574
BstNI	CCWGG	1 cut(s)	479
BstSCI	CCNGG	4 cut(s)	98, 111, 217, 477
BstSLI	GKGCMC	1 cut(s)	70
BstUI	CGCG	3 cut(s)	172, 498, 687
BstV2I	GAAGAC	2 cut(s)	324, 537
BstX2I	RGATCY	1 cut(s)	265
BstYI	RGATCY	1 cut(s)	265
BstZI	CGGCCG	1 cut(s)	109
BsuRI	GGCC	5 cut(s)	9, 98, 103, 111, 154
BtgI	CCRYGG	1 cut(s)	519
BtrI	CACGTC	1 cut(s)	649
BtsCI	GGATG	2 cut(s)	366, 403
Cac8I	GCNNGC	5 cut(s)	11, 170, 566, 628, 632
CfoI	GCGC	4 cut(s)	498, 512, 564, 687
Cfr13I	GGNCC	3 cut(s)	97, 102, 481
CseI	GACGC	2 cut(s)	161, 650
Csp6I	GTAC	1 cut(s)	296
CviAII	CATG	1 cut(s)	492
CviQI	GTAC	1 cut(s)	296
DinI	GGCGCC	1 cut(s)	511
DpnI	GATC	2 cut(s)	267, 463
DpnII	GATC	2 cut(s)	265, 461
DraI	TTTAAA	1 cut(s)	286
EaeI	YGGCCR	1 cut(s)	109
EagI	CGGCCG	1 cut(s)	109
Ecl136II	GAGCTC	1 cut(s)	412
EclXI	CGGCCG	1 cut(s)	109
Eco24I	GRGCYC	1 cut(s)	414
Eco47I	GGWCC	1 cut(s)	481
Eco47III	AGCGCT	1 cut(s)	563
Eco52I	CGGCCG	1 cut(s)	109
Eco53kI	GAGCTC	1 cut(s)	412
Eco88I	CYCGRG	1 cut(s)	347
EcoICRI	GAGCTC	1 cut(s)	412
EcoRII	CCWGG	1 cut(s)	477
EcoT38I	GRGCYC	1 cut(s)	414
EgeI	GGCGCC	1 cut(s)	511
EheI	GGCGCC	1 cut(s)	511
FaeI	CATG	1 cut(s)	495
FaiI	YATR	7 cut(s)	51, 78, 83, 246, 281, 329, 493
FaqI	GGGAC	1 cut(s)	70
FatI	CATG	1 cut(s)	491
FauI	CCCGC	2 cut(s)	95, 607
Fnu4HI	GCNGC	6 cut(s)	14, 28, 61, 443, 513, 516
FokI	GGATG	2 cut(s)	373, 410
FriOI	GRGCYC	1 cut(s)	414
Fsp4HI	GCNGC	6 cut(s)	14, 28, 61, 443, 513, 516
GlaI	GCGC	4 cut(s)	497, 511, 563, 686
GluI	GCNGC	6 cut(s)	14, 28, 61, 443, 513, 516
GsaI	CCCAGC	1 cut(s)	73
HaeII	RGCGCY	2 cut(s)	513, 565
HaeIII	GGCC	5 cut(s)	9, 98, 103, 111, 154
HapII	CCGG	4 cut(s)	100, 112, 218, 527
HgaI	GACGC	2 cut(s)	161, 650
HhaI	GCGC	4 cut(s)	498, 512, 564, 687
Hin1I	GRCGYC	2 cut(s)	510, 642
Hin1II	CATG	1 cut(s)	495
Hin6I	GCGC	4 cut(s)	496, 510, 562, 685
HinP1I	GCGC	4 cut(s)	496, 510, 562, 685
HinfI	GANTC	3 cut(s)	212, 230, 583
HpaII	CCGG	4 cut(s)	100, 112, 218, 527
HphI	GGTGA	6 cut(s)	207, 221, 225, 239, 336, 456
Hpy188I	TCNGA	1 cut(s)	472
Hpy188III	TCNNGA	2 cut(s)	263, 547
Hpy99I	CGWCG	3 cut(s)	503, 644, 650
HpyAV	CCTTC	3 cut(s)	150, 477, 565
HpyCH4III	ACNGT	1 cut(s)	602
HpyCH4IV	ACGT	1 cut(s)	648
HpyCH4V	TGCA	1 cut(s)	384
HpyF10VI	GCNNNNNNNGC	2 cut(s)	442, 574
HpySE526I	ACGT	1 cut(s)	648
Hsp92I	GRCGYC	2 cut(s)	510, 642
Hsp92II	CATG	1 cut(s)	495
HspAI	GCGC	4 cut(s)	496, 510, 562, 685
KasI	GGCGCC	1 cut(s)	509
Kzo9I	GATC	2 cut(s)	265, 461
LmnI	GCTCC	5 cut(s)	188, 272, 523, 574, 617
LweI	GCATC	3 cut(s)	312, 388, 429
MaeII	ACGT	1 cut(s)	648
MaeIII	GTNAC	4 cut(s)	177, 368, 678, 688
MalI	GATC	2 cut(s)	267, 463
MbiI	CCGCTC	2 cut(s)	577, 620
MboI	GATC	2 cut(s)	265, 461
MboII	GAAGA	2 cut(s)	324, 542
MflI	RGATCY	1 cut(s)	265
MhlI	GDGCHC	2 cut(s)	70, 414
MluCI	AATT	3 cut(s)	238, 594, 670
Mly113I	GGCGCC	1 cut(s)	510
MnlI	CCTC	6 cut(s)	116, 165, 548, 551, 554, 600
MroXI	GAANNNNTTC	1 cut(s)	124
MseI	TTAA	2 cut(s)	285, 356
MspI	CCGG	4 cut(s)	100, 112, 218, 527
MspR9I	CCNGG	4 cut(s)	100, 113, 219, 479
MvaI	CCWGG	1 cut(s)	479
MvnI	CGCG	3 cut(s)	172, 498, 687
MwoI	GCNNNNNNNGC	2 cut(s)	442, 574
NarI	GGCGCC	1 cut(s)	510
NciI	CCSGG	3 cut(s)	100, 113, 219
NdeII	GATC	2 cut(s)	265, 461
NlaIII	CATG	1 cut(s)	495
NlaIV	GGNNCC	3 cut(s)	104, 511, 525
NmeAIII	GCCGAG	1 cut(s)	87
NmuCI	GTSAC	2 cut(s)	177, 678
PcsI	WCGNNNNNNNCGW	1 cut(s)	645
PdmI	GAANNNNTTC	1 cut(s)	124
PfeI	GAWTC	3 cut(s)	212, 230, 583
PflMI	CCANNNNNTGG	1 cut(s)	40
PfoI	TCCNGGA	1 cut(s)	477
PkrI	GCNGC	6 cut(s)	15, 29, 62, 444, 514, 517
PluTI	GGCGCC	1 cut(s)	513
Psp124BI	GAGCTC	1 cut(s)	414
Psp6I	CCWGG	1 cut(s)	477
PspFI	CCCAGC	1 cut(s)	69
PspGI	CCWGG	1 cut(s)	477
PspN4I	GGNNCC	3 cut(s)	104, 511, 525
PspPI	GGNCC	3 cut(s)	97, 102, 481
PsuI	RGATCY	1 cut(s)	265
RsaI	GTAC	1 cut(s)	297
RsaNI	GTAC	1 cut(s)	296
SacI	GAGCTC	1 cut(s)	414
SaqAI	TTAA	2 cut(s)	285, 356
SatI	GCNGC	6 cut(s)	14, 28, 61, 443, 513, 516
Sau3AI	GATC	2 cut(s)	265, 461
Sau96I	GGNCC	3 cut(s)	97, 102, 481
ScaI	AGTACT	1 cut(s)	297
ScrFI	CCNGG	4 cut(s)	100, 113, 219, 479
SduI	GDGCHC	2 cut(s)	70, 414
SetI	ASST	8 cut(s)	150, 170, 414, 469, 486, 540, 651, 697
SfaNI	GCATC	3 cut(s)	312, 388, 429
SfoI	GGCGCC	1 cut(s)	511
SinI	GGWCC	1 cut(s)	481
SmlI	CTYRAG	1 cut(s)	545
SmoI	CTYRAG	1 cut(s)	545
Sse9I	AATT	3 cut(s)	238, 594, 670
SspDI	GGCGCC	1 cut(s)	509
SstI	GAGCTC	1 cut(s)	414
StyD4I	CCNGG	4 cut(s)	98, 111, 217, 477
TaaI	ACNGT	1 cut(s)	602
TaiI	ACGT	1 cut(s)	651
TaqI	TCGA	5 cut(s)	134, 427, 460, 558, 581
TasI	AATT	3 cut(s)	238, 594, 670
TatI	WGTACW	1 cut(s)	295
TauI	GCSGC	6 cut(s)	16, 30, 63, 445, 515, 518
TfiI	GAWTC	3 cut(s)	212, 230, 583
Tru1I	TTAA	2 cut(s)	285, 356
Tru9I	TTAA	2 cut(s)	285, 356
TseFI	GTSAC	2 cut(s)	177, 678
Tsp45I	GTSAC	2 cut(s)	177, 678
TspDTI	ATGAA	2 cut(s)	117, 434
Van91I	CCANNNNNTGG	1 cut(s)	40
VpaK11BI	GGWCC	1 cut(s)	481
XapI	RAATTY	3 cut(s)	238, 594, 670
XmnI	GAANNNNTTC	1 cut(s)	124
ZrmI	AGTACT	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.