Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0004872

Physical Location & Seq

Genomic Coordinates Forward (+)

58571779 .. 58573887

Gene Structure 2109 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG372700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGTACGACCTCTGGCTCTCCCAACGCCTCCGCCACCACTCGGACAACTATGACGACGGCCACCGTGCCCAGCCCTATAATCTGTCCCGCAAAAGACCCAGCCCCCTCAGCCCGGCAAGAAGCAGTTCATCATCGAACCCTTCAAAGCAGAGAATAAATCAACATGTAAATTTGCATAATGATCTGAAGACAAAGTTTATCGAAGGGGCCAAAGAACGTAAAGAACTCTACAACAAGGTGTTAGAGTTGAAAGGAAACATAAGGGTCTTTTGCAGGTGTAGGCCTCTAAACACTGAGGAAGTTTCAGTAGGAGCTTCAATGGCTATTGACTTTGAATCTGAGAAAGAAGGTGAGCTTGTTGTCAAGTCAAATGGGGTTACAAGAAGGACCTTTAAGTTTGATGCAGTTTTCGGCCCTCAAGCAGACCAAGCTGATGTCTTCGAAGACACAGCTCCATTTGCAACCTCAGTTCTAGATGGGTACAATGTCTGCATATTTGCTTGTTCCAGGGAATCAGCCGGGATCAGCTGCCAAAAGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin Malectin

Protein Analysis

180

Amino Acids

20.32

Weight (kDa)

8.59

Isoelectric Point (pI)

58.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Microtub_bd	PF16796	70 - 171	1.9e-25	Microtubule binding
Kinesin	PF00225	92 - 169	4.8e-14	Kinesin motor domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004872)

Species	Orthologous Gene IDs
malus_domestica	MD04G1205200.v1.1
pyrus_communis	pycom03g16180 pycom04g18130
rosa_chinensis	RchiOBHm_Chr2g0147251
rosa_laevigata	RLG00000001747 RLG00000011422 RLG00000027814
rosa_multiflora	Rmu_sc0000239.1_g000021 Rmu_sc0000281.1_g000007 Rmu_sc0012870.1_g000005
rosa_roxburghii	Rroxscaffold_1G00042640 Rroxscaffold_2G00137820 Rroxscaffold_3G00246700 Rroxscaffold_4G00310320 Rroxscaffold_5G00348420
rosa_rugosa	Rorug01G0187600 Rorug03G0334800 Rorug05G0314300 Rorug05G0314400 Rorug05G0314500 Rorug05G0314600 Rorug06G0126800
rosa_samantha	Rh1CG247300 Rh1DG034400 Rh4CG158400 Rh5AG257400 Rh5AG425700 Rh5BG372700 Rh5BG554500 Rh5BG555000 Rh5CG577300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	264
Acc36I	ACCTGC	1 cut(s)	264
AciI	CCGC	2 cut(s)	31, 88
AclWI	GGATC	1 cut(s)	530
AcoI	YGGCCR	1 cut(s)	58
AcsI	RAATTY	1 cut(s)	169
AcuI	CTGAAG	1 cut(s)	206
AfaI	GTAC	2 cut(s)	5, 482
AfiI	CCNNNNNNNGG	2 cut(s)	40, 112
AflIII	ACRYGT	1 cut(s)	163
AgsI	TTSAA	4 cut(s)	144, 250, 318, 335
AjnI	CCWGG	1 cut(s)	506
AluBI	AGCT	5 cut(s)	314, 355, 431, 452, 528
AluI	AGCT	5 cut(s)	314, 355, 431, 452, 528
AlwI	GGATC	1 cut(s)	530
AoxI	GGCC	4 cut(s)	58, 207, 281, 412
ApeKI	GCWGC	1 cut(s)	528
ApoI	RAATTY	1 cut(s)	169
Asp700I	GAANNNNTTC	1 cut(s)	124
AspS9I	GGNCC	3 cut(s)	207, 387, 413
AsuC2I	CCSGG	2 cut(s)	113, 520
AsuHPI	GGTGA	1 cut(s)	362
AsuII	TTCGAA	1 cut(s)	441
AvaII	GGWCC	1 cut(s)	387
BaeGI	GKGCMC	1 cut(s)	70
BbsI	GAAGAC	3 cut(s)	194, 430, 450
BbvCI	CCTCAGC	1 cut(s)	107
BbvI	GCAGC	1 cut(s)	515
BccI	CCATC	1 cut(s)	470
BceAI	ACGGC	1 cut(s)	73
BciT130I	CCWGG	1 cut(s)	508
BcnI	CCSGG	2 cut(s)	113, 520
BfaI	CTAG	1 cut(s)	473
BfuAI	ACCTGC	1 cut(s)	264
BisI	GCNGC	1 cut(s)	529
BlsI	GCNGC	1 cut(s)	530
Bme1390I	CCNGG	3 cut(s)	113, 508, 520
Bme18I	GGWCC	1 cut(s)	387
BmgT120I	GGNCC	3 cut(s)	207, 387, 413
BmiI	GGNNCC	1 cut(s)	208
BmrFI	CCNGG	3 cut(s)	113, 508, 520
BmsI	GCATC	1 cut(s)	391
BpiI	GAAGAC	3 cut(s)	194, 430, 450
Bpu10I	CCTNAGC	1 cut(s)	107
Bpu14I	TTCGAA	1 cut(s)	441
BpuEI	CTTGAG	1 cut(s)	402
BpuMI	CCSGG	2 cut(s)	113, 520
BsaJI	CCNNGG	1 cut(s)	507
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 112
BseBI	CCWGG	1 cut(s)	508
BseDI	CCNNGG	1 cut(s)	507
BseLI	CCNNNNNNNGG	2 cut(s)	40, 112
BseMII	CTCAG	4 cut(s)	121, 285, 330, 480
BseSI	GKGCMC	1 cut(s)	70
BseXI	GCAGC	1 cut(s)	515
BseYI	CCCAGC	2 cut(s)	69, 98
BshFI	GGCC	4 cut(s)	60, 209, 283, 414
BsiSI	CCGG	2 cut(s)	113, 519
BslFI	GGGAC	1 cut(s)	70
BslI	CCNNNNNNNGG	2 cut(s)	40, 112
BsmFI	GGGAC	1 cut(s)	70
BsnI	GGCC	4 cut(s)	60, 209, 283, 414
Bsp119I	TTCGAA	1 cut(s)	441
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp143I	GATC	2 cut(s)	181, 522
BspACI	CCGC	2 cut(s)	31, 88
BspANI	GGCC	4 cut(s)	60, 209, 283, 414
BspCNI	CTCAG	4 cut(s)	120, 286, 331, 479
BspLI	GGNNCC	1 cut(s)	208
BspMI	ACCTGC	1 cut(s)	264
BspPI	GGATC	1 cut(s)	530
BspT104I	TTCGAA	1 cut(s)	441
BssECI	CCNNGG	1 cut(s)	507
BssMI	GATC	2 cut(s)	181, 522
Bst2UI	CCWGG	1 cut(s)	508
Bst4CI	ACNGT	1 cut(s)	65
BstBI	TTCGAA	1 cut(s)	441
BstDEI	CTNAG	4 cut(s)	107, 294, 339, 466
BstKTI	GATC	2 cut(s)	184, 525
BstMBI	GATC	2 cut(s)	181, 522
BstMWI	GCNNNNNNNGC	4 cut(s)	108, 320, 428, 458
BstNI	CCWGG	1 cut(s)	508
BstNSI	RCATGY	1 cut(s)	167
BstSCI	CCNGG	3 cut(s)	111, 506, 518
BstSLI	GKGCMC	1 cut(s)	70
BstV1I	GCAGC	1 cut(s)	515
BstV2I	GAAGAC	3 cut(s)	194, 430, 450
BsuRI	GGCC	4 cut(s)	60, 209, 283, 414
BtsIMutI	CAGTG	1 cut(s)	291
BveI	ACCTGC	1 cut(s)	264
Cfr13I	GGNCC	3 cut(s)	207, 387, 413
Csp6I	GTAC	2 cut(s)	4, 481
CviAII	CATG	1 cut(s)	164
CviQI	GTAC	2 cut(s)	4, 481
DdeI	CTNAG	4 cut(s)	107, 294, 339, 466
DpnI	GATC	2 cut(s)	183, 524
DpnII	GATC	2 cut(s)	181, 522
EaeI	YGGCCR	1 cut(s)	58
EciI	GGCGGA	1 cut(s)	20
Eco147I	AGGCCT	1 cut(s)	283
Eco47I	GGWCC	1 cut(s)	387
Eco57I	CTGAAG	1 cut(s)	206
EcoO109I	RGGNCCY	1 cut(s)	387
EcoRII	CCWGG	1 cut(s)	506
FaeI	CATG	1 cut(s)	167
FaiI	YATR	6 cut(s)	51, 78, 165, 177, 260, 494
FalI	AAGNNNNNCTT	2 cut(s)	339, 371
FaqI	GGGAC	1 cut(s)	70
FatI	CATG	1 cut(s)	163
FauI	CCCGC	1 cut(s)	95
Fnu4HI	GCNGC	1 cut(s)	529
Fsp4HI	GCNGC	1 cut(s)	529
FspBI	CTAG	1 cut(s)	473
GluI	GCNGC	1 cut(s)	529
GsaI	CCCAGC	2 cut(s)	73, 102
HaeIII	GGCC	4 cut(s)	60, 209, 283, 414
HapII	CCGG	2 cut(s)	113, 519
Hin1II	CATG	1 cut(s)	167
HinfI	GANTC	2 cut(s)	335, 512
HpaII	CCGG	2 cut(s)	113, 519
HphI	GGTGA	1 cut(s)	362
Hpy188I	TCNGA	3 cut(s)	43, 186, 340
Hpy188III	TCNNGA	1 cut(s)	473
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	4 cut(s)	150, 197, 341, 378
HpyCH4III	ACNGT	1 cut(s)	65
HpyCH4IV	ACGT	1 cut(s)	217
HpyCH4V	TGCA	5 cut(s)	175, 273, 404, 461, 492
HpyF10VI	GCNNNNNNNGC	4 cut(s)	108, 320, 428, 458
HpyF3I	CTNAG	4 cut(s)	107, 294, 339, 466
HpySE526I	ACGT	1 cut(s)	217
Hsp92II	CATG	1 cut(s)	167
Kzo9I	GATC	2 cut(s)	181, 522
LmnI	GCTCC	2 cut(s)	311, 457
LpnPI	CCDG	7 cut(s)	83, 112, 126, 259, 493, 520, 532
Lsp1109I	GCAGC	1 cut(s)	515
LweI	GCATC	1 cut(s)	391
MaeI	CTAG	1 cut(s)	473
MaeII	ACGT	1 cut(s)	217
MaeIII	GTNAC	1 cut(s)	376
MalI	GATC	2 cut(s)	183, 524
MboI	GATC	2 cut(s)	181, 522
MboII	GAAGA	3 cut(s)	199, 430, 455
MhlI	GDGCHC	1 cut(s)	70
MluCI	AATT	1 cut(s)	169
MnlI	CCTC	7 cut(s)	20, 38, 116, 289, 294, 426, 475
MroXI	GAANNNNTTC	1 cut(s)	124
MseI	TTAA	1 cut(s)	393
MspA1I	CMGCKG	1 cut(s)	528
MspI	CCGG	2 cut(s)	113, 519
MspR9I	CCNGG	3 cut(s)	113, 508, 520
MvaI	CCWGG	1 cut(s)	508
MwoI	GCNNNNNNNGC	4 cut(s)	108, 320, 428, 458
NciI	CCSGG	2 cut(s)	113, 520
NdeII	GATC	2 cut(s)	181, 522
NlaIII	CATG	1 cut(s)	167
NlaIV	GGNNCC	1 cut(s)	208
NspI	RCATGY	1 cut(s)	167
NspV	TTCGAA	1 cut(s)	441
PaqCI	CACCTGC	1 cut(s)	264
PceI	AGGCCT	1 cut(s)	283
PciI	ACATGT	1 cut(s)	163
PdmI	GAANNNNTTC	1 cut(s)	124
PfeI	GAWTC	2 cut(s)	335, 512
PkrI	GCNGC	1 cut(s)	530
PpuMI	RGGWCCY	1 cut(s)	387
PscI	ACATGT	1 cut(s)	163
Psp5II	RGGWCCY	1 cut(s)	387
Psp6I	CCWGG	1 cut(s)	506
PspFI	CCCAGC	2 cut(s)	69, 98
PspGI	CCWGG	1 cut(s)	506
PspN4I	GGNNCC	1 cut(s)	208
PspPI	GGNCC	3 cut(s)	207, 387, 413
PspPPI	RGGWCCY	1 cut(s)	387
PvuII	CAGCTG	1 cut(s)	528
RsaI	GTAC	2 cut(s)	5, 482
RsaNI	GTAC	2 cut(s)	4, 481
SaqAI	TTAA	1 cut(s)	393
SatI	GCNGC	1 cut(s)	529
Sau3AI	GATC	2 cut(s)	181, 522
Sau96I	GGNCC	3 cut(s)	207, 387, 413
ScrFI	CCNGG	3 cut(s)	113, 508, 520
SduI	GDGCHC	1 cut(s)	70
SfaNI	GCATC	1 cut(s)	391
SfuI	TTCGAA	1 cut(s)	441
SinI	GGWCC	1 cut(s)	387
SmlI	CTYRAG	1 cut(s)	417
SmoI	CTYRAG	1 cut(s)	417
Sse9I	AATT	1 cut(s)	169
SseBI	AGGCCT	1 cut(s)	283
SsiI	CCGC	2 cut(s)	31, 88
SspMI	CTAG	1 cut(s)	473
StuI	AGGCCT	1 cut(s)	283
StyD4I	CCNGG	3 cut(s)	111, 506, 518
TaaI	ACNGT	1 cut(s)	65
TaiI	ACGT	1 cut(s)	220
TaqI	TCGA	3 cut(s)	134, 201, 441
TasI	AATT	1 cut(s)	169
TfiI	GAWTC	2 cut(s)	335, 512
Tru1I	TTAA	1 cut(s)	393
Tru9I	TTAA	1 cut(s)	393
TscAI	CASTG	1 cut(s)	298
TseI	GCWGC	1 cut(s)	528
TspDTI	ATGAA	1 cut(s)	117
TspRI	CASTG	1 cut(s)	298
VpaK11BI	GGWCC	1 cut(s)	387
XapI	RAATTY	1 cut(s)	169
XbaI	TCTAGA	1 cut(s)	472
XceI	RCATGY	1 cut(s)	167
XmnI	GAANNNNTTC	1 cut(s)	124
XspI	CTAG	1 cut(s)	473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.