Rorug03G0334800
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Reverse (-)
39292736 .. 39293299
564 bp
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UTR
Exon/CDS
Intron
Rorug03G0334800.1

Sequence Viewer

Length: 564 bp
ATGCACTTTGGTTGTGTCCTAAAGCAAAAGCTGTTTGGTGTATCCCCCTTCAAAGCTGCAGTTGGCAATTGGAAATTTGGCTCTTTCAAGGAATTGTTCTGTTTTGCTGCCTCCATCTTGTCTGCTGCAGATTTGGCTTTGGTGGTGCTAATTTGTCGTCGTATTTGGCAAGCAAGAAATGAAGAATTCCATCAACACAAATTTGTAAGCCCTGATTATGTTTTTTCTCAAGTTCAGACTTCTTTTGCTGAACTTCTGAAGGTACATCAGACTCCTTCCTTTCCTCCTAGACCTGTTGGTTTTACTGATAAATGGGTTAGACCACAGCTCCCTTTCCTTAAGTTAAATGTTGATGGTGCTTTGGATGATACGAATGGAGTCCGAGGCTTGGGAATTATCCTGCGTAATGAAAGGGGTGATATGTTGTTGGCAGCTTCAAAAGGGATGCCTGGCAGGTTTAATGCAAAGACAACTGAAATATATGCCGCAGCTTTGGGATACCTGCTCTCTCAATCCGGGATCCAATCTGCTCAATTGATTCTTGAATTTGTGCTCTGGCCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

187

Amino Acids

20.88

Weight (kDa)

9.4

Isoelectric Point (pI)

38.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 444, 510
AciI CCGC 1 cut(s) 486
AclWI GGATC 2 cut(s) 514, 527
AcoI YGGCCR 1 cut(s) 557
AcsI RAATTY 4 cut(s) 74, 185, 200, 545
AcuI CTGAAG 1 cut(s) 278
AfaI GTAC 1 cut(s) 264
AfiI CCNNNNNNNGG 1 cut(s) 388
AflII CTTAAG 1 cut(s) 338
AgsI TTSAA 4 cut(s) 52, 88, 438, 545
AjnI CCWGG 1 cut(s) 448
AluBI AGCT 5 cut(s) 31, 56, 328, 434, 491
AluI AGCT 5 cut(s) 31, 56, 328, 434, 491
Alw21I GWGCWC 1 cut(s) 555
AlwI GGATC 2 cut(s) 514, 527
AoxI GGCC 1 cut(s) 557
ApeKI GCWGC 5 cut(s) 56, 107, 125, 431, 488
ApoI RAATTY 4 cut(s) 74, 185, 200, 545
AsuC2I CCSGG 1 cut(s) 517
AsuHPI GGTGA 1 cut(s) 428
BamHI GGATCC 1 cut(s) 519
Bbv12I GWGCWC 1 cut(s) 555
BbvI GCAGC 5 cut(s) 43, 94, 112, 443, 500
BccI CCATC 3 cut(s) 122, 198, 347
BceAI ACGGC 1 cut(s) 544
BciT130I CCWGG 1 cut(s) 450
BciVI GTATCC 2 cut(s) 52, 491
BcnI CCSGG 1 cut(s) 517
BfaI CTAG 1 cut(s) 288
BfmI CTRYAG 2 cut(s) 57, 126
BfrI CTTAAG 1 cut(s) 338
BfuAI ACCTGC 2 cut(s) 444, 510
BfuI GTATCC 2 cut(s) 52, 491
BisI GCNGC 6 cut(s) 57, 108, 126, 432, 486, 489
BlsI GCNGC 6 cut(s) 58, 109, 127, 433, 487, 490
Bme1390I CCNGG 2 cut(s) 450, 517
BmiI GGNNCC 1 cut(s) 521
BmrFI CCNGG 2 cut(s) 450, 517
BmsI GCATC 1 cut(s) 435
BpuEI CTTGAG 1 cut(s) 213
BpuMI CCSGG 1 cut(s) 517
BsaJI CCNNGG 1 cut(s) 382
BsaXI ACNNNNNCTCC 2 cut(s) 312, 342
Bsc4I CCNNNNNNNGG 1 cut(s) 388
BseBI CCWGG 1 cut(s) 450
BseDI CCNNGG 1 cut(s) 382
BseGI GGATG 2 cut(s) 370, 450
BseLI CCNNNNNNNGG 1 cut(s) 388
BseXI GCAGC 5 cut(s) 43, 94, 112, 443, 500
BshFI GGCC 1 cut(s) 559
BsiHKAI GWGCWC 1 cut(s) 555
BsiSI CCGG 1 cut(s) 516
BslI CCNNNNNNNGG 1 cut(s) 388
BsnI GGCC 1 cut(s) 559
Bsp1286I GDGCHC 1 cut(s) 555
Bsp143I GATC 1 cut(s) 519
BspACI CCGC 1 cut(s) 486
BspANI GGCC 1 cut(s) 559
BspLI GGNNCC 1 cut(s) 521
BspMAI CTGCAG 2 cut(s) 61, 130
BspMI ACCTGC 2 cut(s) 444, 510
BspPI GGATC 2 cut(s) 514, 527
BspTI CTTAAG 1 cut(s) 338
BssECI CCNNGG 1 cut(s) 382
BssMI GATC 1 cut(s) 519
Bst2UI CCWGG 1 cut(s) 450
BstAFI CTTAAG 1 cut(s) 338
BstC8I GCNNGC 1 cut(s) 171
BstF5I GGATG 2 cut(s) 370, 450
BstKTI GATC 1 cut(s) 522
BstMBI GATC 1 cut(s) 519
BstMWI GCNNNNNNNGC 1 cut(s) 134
BstNI CCWGG 1 cut(s) 450
BstSCI CCNGG 2 cut(s) 448, 515
BstSFI CTRYAG 2 cut(s) 57, 126
BstV1I GCAGC 5 cut(s) 43, 94, 112, 443, 500
BstX2I RGATCY 1 cut(s) 519
BstYI RGATCY 1 cut(s) 519
BsuI GTATCC 2 cut(s) 52, 491
BsuRI GGCC 1 cut(s) 559
BtsCI GGATG 2 cut(s) 370, 450
BveI ACCTGC 2 cut(s) 444, 510
Cac8I GCNNGC 1 cut(s) 171
Csp6I GTAC 1 cut(s) 263
CviQI GTAC 1 cut(s) 263
DpnI GATC 1 cut(s) 521
DpnII GATC 1 cut(s) 519
EaeI YGGCCR 1 cut(s) 557
Eco57I CTGAAG 1 cut(s) 278
EcoRI GAATTC 1 cut(s) 185
EcoRII CCWGG 1 cut(s) 448
FaiI YATR 4 cut(s) 219, 422, 481, 483
Fnu4HI GCNGC 6 cut(s) 57, 108, 126, 432, 486, 489
FokI GGATG 2 cut(s) 377, 457
Fsp4HI GCNGC 6 cut(s) 57, 108, 126, 432, 486, 489
FspBI CTAG 1 cut(s) 288
GluI GCNGC 6 cut(s) 57, 108, 126, 432, 486, 489
HaeIII GGCC 1 cut(s) 559
HapII CCGG 1 cut(s) 516
HinfI GANTC 3 cut(s) 271, 378, 538
HpaII CCGG 1 cut(s) 516
HphI GGTGA 1 cut(s) 428
Hpy188I TCNGA 4 cut(s) 237, 258, 270, 383
Hpy188III TCNNGA 1 cut(s) 542
Hpy99I CGWCG 1 cut(s) 162
HpyAV CCTTC 3 cut(s) 58, 253, 285
HpyCH4V TGCA 4 cut(s) 4, 59, 128, 464
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
Kzo9I GATC 1 cut(s) 519
LmnI GCTCC 1 cut(s) 333
LpnPI CCDG 9 cut(s) 225, 306, 413, 435, 439, 462, 515, 529, 541
Lsp1109I GCAGC 5 cut(s) 43, 94, 112, 443, 500
LweI GCATC 1 cut(s) 435
MaeI CTAG 1 cut(s) 288
MalI GATC 1 cut(s) 521
MboI GATC 1 cut(s) 519
MboII GAAGA 1 cut(s) 194
MfeI CAATTG 2 cut(s) 67, 533
MflI RGATCY 1 cut(s) 519
MhlI GDGCHC 1 cut(s) 555
MluCI AATT 9 cut(s) 67, 74, 92, 150, 185, 200, 393, 533, 545
MlyI GAGTC 2 cut(s) 265, 387
MnlI CCTC 3 cut(s) 121, 294, 377
MseI TTAA 3 cut(s) 339, 344, 459
MspCI CTTAAG 1 cut(s) 338
MspI CCGG 1 cut(s) 516
MspR9I CCNGG 2 cut(s) 450, 517
MunI CAATTG 2 cut(s) 67, 533
MvaI CCWGG 1 cut(s) 450
MwoI GCNNNNNNNGC 1 cut(s) 134
NciI CCSGG 1 cut(s) 517
NdeII GATC 1 cut(s) 519
NlaIV GGNNCC 1 cut(s) 521
PfeI GAWTC 1 cut(s) 538
PfoI TCCNGGA 1 cut(s) 515
PkrI GCNGC 6 cut(s) 58, 109, 127, 433, 487, 490
PleI GAGTC 2 cut(s) 265, 386
PpsI GAGTC 2 cut(s) 265, 386
Psp6I CCWGG 1 cut(s) 448
PspGI CCWGG 1 cut(s) 448
PspN4I GGNNCC 1 cut(s) 521
PstI CTGCAG 2 cut(s) 61, 130
PsuI RGATCY 1 cut(s) 519
RsaI GTAC 1 cut(s) 264
RsaNI GTAC 1 cut(s) 263
SaqAI TTAA 3 cut(s) 339, 344, 459
SatI GCNGC 6 cut(s) 57, 108, 126, 432, 486, 489
Sau3AI GATC 1 cut(s) 519
SchI GAGTC 2 cut(s) 265, 387
ScrFI CCNGG 2 cut(s) 450, 517
SduI GDGCHC 1 cut(s) 555
SetI ASST 9 cut(s) 33, 58, 264, 295, 330, 436, 458, 493, 504
SfaNI GCATC 1 cut(s) 435
SfcI CTRYAG 2 cut(s) 57, 126
SmlI CTYRAG 2 cut(s) 228, 338
SmoI CTYRAG 2 cut(s) 228, 338
Sse9I AATT 9 cut(s) 67, 74, 92, 150, 185, 200, 393, 533, 545
SsiI CCGC 1 cut(s) 486
SspMI CTAG 1 cut(s) 288
StyD4I CCNGG 2 cut(s) 448, 515
TasI AATT 9 cut(s) 67, 74, 92, 150, 185, 200, 393, 533, 545
TauI GCSGC 1 cut(s) 488
TfiI GAWTC 1 cut(s) 538
Tru1I TTAA 3 cut(s) 339, 344, 459
Tru9I TTAA 3 cut(s) 339, 344, 459
TseI GCWGC 5 cut(s) 56, 107, 125, 431, 488
TspDTI ATGAA 2 cut(s) 195, 423
Vha464I CTTAAG 1 cut(s) 338
XapI RAATTY 4 cut(s) 74, 185, 200, 545
XspI CTAG 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.