Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0004872

Physical Location & Seq

Genomic Coordinates Reverse (-)

88113785 .. 88129466

Gene Structure 15682 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG554500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGAGGCAGAGATTGAGGGTGTTCGGGAGGGCGGCTGCACAAGGAAGGGGGAATGGCCCATCATCGTAAACCTCTCTCAGATCCAATCTCTCTGGCTGATATGGACGACCTCTGGCTCTCCCAACGCTACCACAACGACTCTGACATTTACACGACAGCCGCTGTGCCAGCCCAACAATTTGTCCCGCAAAAAGACCCAGCCCCCTCAGCCCGGCAAGAAGCAGTTCATCATTGAACCCTTTCAAAGGTTTGGCCACGATCCCGAAGCTCGCGATTGTCACGTATGTAGGACTGTTAGCAAACGGGTAGCAAGACTGAAGAACCAAAGGCTGCTCCTAGTGAACCTTTCTCTTTTGATAAATTCTTATCAGGAGTGTGTGCTCCTAATATCAAGGCAGAAGCACCTTTTGGCTGCTCCCACTCGCATTTGTGCTACTCCCTCTTTTTTTCCTAGTTTTGATACTGGATTTTTGGATGTGAGAACTCTAGCCGGAGAACAAGAGAATTGTTGGCAAGAGGTGGAAATTGATTATGATCTACATTTTGATTTTGCTTACAACTATCTTAGTGGTACAATACTAAAGGAATGGGCTTCAAGCTTGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

202

Amino Acids

23.1

Weight (kDa)

8.17

Isoelectric Point (pI)

49.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004872)

Species	Orthologous Gene IDs
malus_domestica	MD04G1205200.v1.1
pyrus_communis	pycom03g16180 pycom04g18130
rosa_chinensis	RchiOBHm_Chr2g0147251
rosa_laevigata	RLG00000001747 RLG00000011422 RLG00000027814
rosa_multiflora	Rmu_sc0000239.1_g000021 Rmu_sc0000281.1_g000007 Rmu_sc0012870.1_g000005
rosa_roxburghii	Rroxscaffold_1G00042640 Rroxscaffold_2G00137820 Rroxscaffold_3G00246700 Rroxscaffold_4G00310320 Rroxscaffold_5G00348420
rosa_rugosa	Rorug01G0187600 Rorug03G0334800 Rorug05G0314300 Rorug05G0314400 Rorug05G0314500 Rorug05G0314600 Rorug06G0126800
rosa_samantha	Rh1CG247300 Rh1DG034400 Rh4CG158400 Rh5AG257400 Rh5AG425700 Rh5BG372700 Rh5BG554500 Rh5BG555000 Rh5CG577300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	273
AciI	CCGC	3 cut(s)	33, 161, 187
AclWI	GGATC	2 cut(s)	76, 254
AcoI	YGGCCR	1 cut(s)	253
AcsI	RAATTY	1 cut(s)	361
AcuI	CTGAAG	1 cut(s)	338
AfaI	GTAC	1 cut(s)	574
AfiI	CCNNNNNNNGG	2 cut(s)	212, 246
AgsI	TTSAA	3 cut(s)	236, 245, 597
AjuI	GAANNNNNNNTTGG	2 cut(s)	392, 424
AluBI	AGCT	2 cut(s)	269, 600
AluI	AGCT	2 cut(s)	269, 600
Alw21I	GWGCWC	1 cut(s)	384
AlwI	GGATC	2 cut(s)	76, 254
AlwNI	CAGNNNCTG	1 cut(s)	163
AoxI	GGCC	2 cut(s)	56, 253
ApeKI	GCWGC	3 cut(s)	36, 331, 413
ApoI	RAATTY	1 cut(s)	361
Asp700I	GAANNNNTTC	2 cut(s)	224, 240
AspS9I	GGNCC	1 cut(s)	57
AsuC2I	CCSGG	1 cut(s)	213
BalI	TGGCCA	1 cut(s)	255
Bbv12I	GWGCWC	1 cut(s)	384
BbvCI	CCTCAGC	1 cut(s)	207
BbvI	GCAGC	3 cut(s)	23, 318, 400
BccI	CCATC	1 cut(s)	68
BcnI	CCSGG	1 cut(s)	213
BfaI	CTAG	3 cut(s)	338, 453, 488
BisI	GCNGC	5 cut(s)	34, 37, 161, 332, 414
BlsI	GCNGC	5 cut(s)	35, 38, 162, 333, 415
Bme1390I	CCNGG	1 cut(s)	213
BmgT120I	GGNCC	1 cut(s)	57
BmrFI	CCNGG	1 cut(s)	213
Bpu10I	CCTNAGC	1 cut(s)	207
BpuMI	CCSGG	1 cut(s)	213
BsaAI	YACGTR	1 cut(s)	283
BsaBI	GATNNNNATC	1 cut(s)	534
Bsc4I	CCNNNNNNNGG	2 cut(s)	212, 246
Bse1I	ACTGG	1 cut(s)	469
Bse8I	GATNNNNATC	1 cut(s)	534
BseGI	GGATG	1 cut(s)	481
BseJI	GATNNNNATC	1 cut(s)	534
BseLI	CCNNNNNNNGG	2 cut(s)	212, 246
BseMII	CTCAG	2 cut(s)	92, 221
BseNI	ACTGG	1 cut(s)	469
BseXI	GCAGC	3 cut(s)	23, 318, 400
BseYI	CCCAGC	1 cut(s)	198
BsgI	GTGCAG	1 cut(s)	22
Bsh1236I	CGCG	1 cut(s)	273
BshFI	GGCC	2 cut(s)	58, 255
BsiHKAI	GWGCWC	1 cut(s)	384
BsiSI	CCGG	2 cut(s)	213, 492
BslFI	GGGAC	1 cut(s)	169
BslI	CCNNNNNNNGG	2 cut(s)	212, 246
BsmFI	GGGAC	1 cut(s)	169
BsnI	GGCC	2 cut(s)	58, 255
Bsp1286I	GDGCHC	1 cut(s)	384
Bsp143I	GATC	3 cut(s)	81, 259, 535
Bsp68I	TCGCGA	1 cut(s)	273
BspACI	CCGC	3 cut(s)	33, 161, 187
BspANI	GGCC	2 cut(s)	58, 255
BspCNI	CTCAG	2 cut(s)	91, 220
BspFNI	CGCG	1 cut(s)	273
BspPI	GGATC	2 cut(s)	76, 254
BsrI	ACTGG	1 cut(s)	469
BssMI	GATC	3 cut(s)	81, 259, 535
Bst4CI	ACNGT	1 cut(s)	295
BstBAI	YACGTR	1 cut(s)	283
BstC8I	GCNNGC	3 cut(s)	170, 271, 602
BstDEI	CTNAG	3 cut(s)	78, 207, 566
BstENI	CCTNNNNNAGG	1 cut(s)	244
BstF5I	GGATG	1 cut(s)	481
BstFNI	CGCG	1 cut(s)	273
BstKTI	GATC	3 cut(s)	84, 262, 538
BstMBI	GATC	3 cut(s)	81, 259, 535
BstMWI	GCNNNNNNNGC	2 cut(s)	169, 208
BstSCI	CCNGG	1 cut(s)	211
BstUI	CGCG	1 cut(s)	273
BstV1I	GCAGC	3 cut(s)	23, 318, 400
BstX2I	RGATCY	1 cut(s)	81
BstYI	RGATCY	1 cut(s)	81
BsuRI	GGCC	2 cut(s)	58, 255
BtsCI	GGATG	1 cut(s)	481
BtuMI	TCGCGA	1 cut(s)	273
Cac8I	GCNNGC	3 cut(s)	170, 271, 602
CaiI	CAGNNNCTG	1 cut(s)	163
Cfr13I	GGNCC	1 cut(s)	57
Csp6I	GTAC	1 cut(s)	573
CviQI	GTAC	1 cut(s)	573
DdeI	CTNAG	3 cut(s)	78, 207, 566
DpnI	GATC	3 cut(s)	83, 261, 537
DpnII	GATC	3 cut(s)	81, 259, 535
EaeI	YGGCCR	1 cut(s)	253
Eco57I	CTGAAG	1 cut(s)	338
EcoNI	CCTNNNNNAGG	1 cut(s)	244
FaiI	YATR	3 cut(s)	103, 286, 534
FaqI	GGGAC	1 cut(s)	169
FauI	CCCGC	1 cut(s)	194
Fnu4HI	GCNGC	5 cut(s)	34, 37, 161, 332, 414
FokI	GGATG	1 cut(s)	488
Fsp4HI	GCNGC	5 cut(s)	34, 37, 161, 332, 414
FspBI	CTAG	3 cut(s)	338, 453, 488
GluI	GCNGC	5 cut(s)	34, 37, 161, 332, 414
GsaI	CCCAGC	1 cut(s)	202
HaeIII	GGCC	2 cut(s)	58, 255
HapII	CCGG	2 cut(s)	213, 492
HindIII	AAGCTT	1 cut(s)	598
HinfI	GANTC	1 cut(s)	139
HpaII	CCGG	2 cut(s)	213, 492
Hpy166II	GTNNAC	2 cut(s)	70, 343
Hpy188I	TCNGA	2 cut(s)	81, 144
Hpy188III	TCNNGA	4 cut(s)	26, 263, 272, 371
Hpy8I	GTNNAC	2 cut(s)	70, 343
HpyAV	CCTTC	1 cut(s)	40
HpyCH4III	ACNGT	1 cut(s)	295
HpyCH4IV	ACGT	1 cut(s)	282
HpyCH4V	TGCA	2 cut(s)	39, 604
HpyF10VI	GCNNNNNNNGC	2 cut(s)	169, 208
HpyF3I	CTNAG	3 cut(s)	78, 207, 566
HpySE526I	ACGT	1 cut(s)	282
Kzo9I	GATC	3 cut(s)	81, 259, 535
LmnI	GCTCC	3 cut(s)	339, 387, 421
LpnPI	CCDG	8 cut(s)	79, 99, 182, 212, 226, 356, 450, 505
Lsp1109I	GCAGC	3 cut(s)	23, 318, 400
MaeI	CTAG	3 cut(s)	338, 453, 488
MaeII	ACGT	1 cut(s)	282
MaeIII	GTNAC	1 cut(s)	278
MalI	GATC	3 cut(s)	83, 261, 537
MboI	GATC	3 cut(s)	81, 259, 535
MboII	GAAGA	1 cut(s)	331
MflI	RGATCY	1 cut(s)	81
MhlI	GDGCHC	1 cut(s)	384
MlsI	TGGCCA	1 cut(s)	255
MluCI	AATT	4 cut(s)	178, 361, 505, 525
MluNI	TGGCCA	1 cut(s)	255
MlyI	GAGTC	1 cut(s)	133
MnlI	CCTC	7 cut(s)	10, 22, 83, 121, 216, 451, 511
Mox20I	TGGCCA	1 cut(s)	255
MroXI	GAANNNNTTC	2 cut(s)	224, 240
MscI	TGGCCA	1 cut(s)	255
Msp20I	TGGCCA	1 cut(s)	255
MspA1I	CMGCKG	1 cut(s)	163
MspI	CCGG	2 cut(s)	213, 492
MspR9I	CCNGG	1 cut(s)	213
MvnI	CGCG	1 cut(s)	273
MwoI	GCNNNNNNNGC	2 cut(s)	169, 208
NciI	CCSGG	1 cut(s)	213
NdeII	GATC	3 cut(s)	81, 259, 535
NmuCI	GTSAC	1 cut(s)	278
NruI	TCGCGA	1 cut(s)	273
PdmI	GAANNNNTTC	2 cut(s)	224, 240
PkrI	GCNGC	5 cut(s)	35, 38, 162, 333, 415
PleI	GAGTC	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	133
Ppu21I	YACGTR	1 cut(s)	283
PspFI	CCCAGC	1 cut(s)	198
PspPI	GGNCC	1 cut(s)	57
PstNI	CAGNNNCTG	1 cut(s)	163
PsuI	RGATCY	1 cut(s)	81
RruI	TCGCGA	1 cut(s)	273
RsaI	GTAC	1 cut(s)	574
RsaNI	GTAC	1 cut(s)	573
SatI	GCNGC	5 cut(s)	34, 37, 161, 332, 414
Sau3AI	GATC	3 cut(s)	81, 259, 535
Sau96I	GGNCC	1 cut(s)	57
SchI	GAGTC	1 cut(s)	133
ScrFI	CCNGG	1 cut(s)	213
SduI	GDGCHC	1 cut(s)	384
SetI	ASST	9 cut(s)	75, 113, 251, 271, 285, 348, 408, 522, 602
Sse9I	AATT	4 cut(s)	178, 361, 505, 525
SsiI	CCGC	3 cut(s)	33, 161, 187
SspMI	CTAG	3 cut(s)	338, 453, 488
StyD4I	CCNGG	1 cut(s)	211
TaaI	ACNGT	1 cut(s)	295
TaiI	ACGT	1 cut(s)	285
TasI	AATT	4 cut(s)	178, 361, 505, 525
TauI	GCSGC	2 cut(s)	36, 163
TseFI	GTSAC	1 cut(s)	278
TseI	GCWGC	3 cut(s)	36, 331, 413
Tsp45I	GTSAC	1 cut(s)	278
TspDTI	ATGAA	1 cut(s)	217
XagI	CCTNNNNNAGG	1 cut(s)	244
XapI	RAATTY	1 cut(s)	361
XmnI	GAANNNNTTC	2 cut(s)	224, 240
XspI	CTAG	3 cut(s)	338, 453, 488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.