Rroxscaffold_1G00042640
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
60970208 .. 60977150
6943 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00042640.1

Sequence Viewer

Length: 252 bp
ATGGCTATTGACTTTGAATCCGAGAAAGAAGGTGAGCTTGTTGTCAAGTCAAATGGGGTTACAAGAAGGACCTTTAAGTTTGATGCAGTTTTCGGCCCTCAAGCGACCAAGGTACATGCATATGATGCAAGTCTTCATAGAGTTATATGTGATATCCATGTTTTCTCCATGGAACGAAGATTTCGTTTCCAATTATTACAACGCAGGAGAGCACGGACTGGACTTGAGAATAAGATAGCCTTACCCGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

83

Amino Acids

9.65

Weight (kDa)

9.73

Isoelectric Point (pI)

53.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 114
AgsI TTSAA 1 cut(s) 17
AluBI AGCT 1 cut(s) 37
AluI AGCT 1 cut(s) 37
Alw21I GWGCWC 1 cut(s) 214
AoxI GGCC 1 cut(s) 94
AspS9I GGNCC 2 cut(s) 69, 95
AsuHPI GGTGA 1 cut(s) 44
AvaII GGWCC 1 cut(s) 69
BbsI GAAGAC 1 cut(s) 125
Bbv12I GWGCWC 1 cut(s) 214
Bme18I GGWCC 1 cut(s) 69
BmgT120I GGNCC 2 cut(s) 69, 95
BmsI GCATC 2 cut(s) 73, 115
BpiI GAAGAC 1 cut(s) 125
BpuEI CTTGAG 2 cut(s) 84, 245
BsaJI CCNNGG 2 cut(s) 108, 168
Bse1I ACTGG 1 cut(s) 223
BseDI CCNNGG 2 cut(s) 108, 168
BseNI ACTGG 1 cut(s) 223
BshFI GGCC 1 cut(s) 96
BsiHKAI GWGCWC 1 cut(s) 214
BsnI GGCC 1 cut(s) 96
Bsp1286I GDGCHC 1 cut(s) 214
Bsp19I CCATGG 1 cut(s) 168
BspANI GGCC 1 cut(s) 96
BsrI ACTGG 1 cut(s) 223
BssECI CCNNGG 2 cut(s) 108, 168
BssT1I CCWWGG 2 cut(s) 108, 168
BstAPI GCANNNNNTGC 1 cut(s) 125
BstDSI CCRYGG 1 cut(s) 168
BstMWI GCNNNNNNNGC 1 cut(s) 125
BstNSI RCATGY 1 cut(s) 119
BstV2I GAAGAC 1 cut(s) 125
BsuRI GGCC 1 cut(s) 96
BtgI CCRYGG 1 cut(s) 168
Cfr13I GGNCC 2 cut(s) 69, 95
Csp6I GTAC 1 cut(s) 113
CviAII CATG 3 cut(s) 116, 158, 169
CviJI RGCY 4 cut(s) 5, 37, 96, 239
CviKI_1 RGCY 4 cut(s) 5, 37, 96, 239
CviQI GTAC 1 cut(s) 113
Eco130I CCWWGG 2 cut(s) 108, 168
Eco32I GATATC 1 cut(s) 154
Eco47I GGWCC 1 cut(s) 69
EcoO109I RGGNCCY 1 cut(s) 69
EcoRV GATATC 1 cut(s) 154
EcoT14I CCWWGG 2 cut(s) 108, 168
EcoT22I ATGCAT 1 cut(s) 121
ErhI CCWWGG 2 cut(s) 108, 168
FaeI CATG 3 cut(s) 119, 161, 172
FaiI YATR 8 cut(s) 117, 121, 123, 138, 146, 148, 159, 170
FalI AAGNNNNNCTT 3 cut(s) 21, 53, 224
FatI CATG 3 cut(s) 115, 157, 168
FauNDI CATATG 1 cut(s) 121
HaeIII GGCC 1 cut(s) 96
Hin1II CATG 3 cut(s) 119, 161, 172
HinfI GANTC 1 cut(s) 17
HphI GGTGA 1 cut(s) 44
Hpy188I TCNGA 1 cut(s) 22
HpyAV CCTTC 2 cut(s) 23, 60
HpyCH4V TGCA 3 cut(s) 86, 119, 128
HpyF10VI GCNNNNNNNGC 1 cut(s) 125
Hsp92II CATG 3 cut(s) 119, 161, 172
LpnPI CCDG 2 cut(s) 190, 204
LweI GCATC 2 cut(s) 73, 115
MaeIII GTNAC 1 cut(s) 58
MboII GAAGA 2 cut(s) 125, 189
MhlI GDGCHC 1 cut(s) 214
MluCI AATT 1 cut(s) 191
MnlI CCTC 1 cut(s) 108
Mph1103I ATGCAT 1 cut(s) 121
MseI TTAA 1 cut(s) 75
MslI CAYNNNNRTG 1 cut(s) 120
MwoI GCNNNNNNNGC 1 cut(s) 125
NcoI CCATGG 1 cut(s) 168
NdeI CATATG 1 cut(s) 121
NlaIII CATG 3 cut(s) 119, 161, 172
NsiI ATGCAT 1 cut(s) 121
NspI RCATGY 1 cut(s) 119
PcsI WCGNNNNNNNCGW 1 cut(s) 181
PfeI GAWTC 1 cut(s) 17
PpuMI RGGWCCY 1 cut(s) 69
Psp5II RGGWCCY 1 cut(s) 69
PspPI GGNCC 2 cut(s) 69, 95
PspPPI RGGWCCY 1 cut(s) 69
RsaI GTAC 1 cut(s) 114
RsaNI GTAC 1 cut(s) 113
RseI CAYNNNNRTG 1 cut(s) 120
SaqAI TTAA 1 cut(s) 75
Sau96I GGNCC 2 cut(s) 69, 95
SduI GDGCHC 1 cut(s) 214
SetI ASST 4 cut(s) 34, 39, 74, 114
SfaNI GCATC 2 cut(s) 73, 115
SinI GGWCC 1 cut(s) 69
SmiMI CAYNNNNRTG 1 cut(s) 120
SmlI CTYRAG 2 cut(s) 99, 224
SmoI CTYRAG 2 cut(s) 99, 224
Sse9I AATT 1 cut(s) 191
StyI CCWWGG 2 cut(s) 108, 168
TasI AATT 1 cut(s) 191
TfiI GAWTC 1 cut(s) 17
Tru1I TTAA 1 cut(s) 75
Tru9I TTAA 1 cut(s) 75
TspDTI ATGAA 1 cut(s) 125
TspGWI ACGGA 1 cut(s) 229
VpaK11BI GGWCC 1 cut(s) 69
XceI RCATGY 1 cut(s) 119
Zsp2I ATGCAT 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.