Rh1CG247300
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0004872
Physical Location & Seq
Reverse (-)
50942871 .. 50946591
3721 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG247300.1

Sequence Viewer

Length: 612 bp
ATGACGACGGCCACCGTGCCTAGCCCTATAATCTGTCCCGCAAAAGGCCCAGCCCTCTCAGCCCGGCAAGAAGCAGTTCATCATCAAACCCTTCAAAGGTTTGGCCTCGATCCCAAAGCTCGCGTCTGTCACGCAGAGAAGTATATCAGGGTCGTCGTAGAGCCCCTAAATCGCCGCCATCGCAGTTACTACTTAAATCAACATGTAAGTTTGCATAATGATCTGAAGACAAAGTTTATCGAAGGGGCCAAAGAACGTAAAGAACTCTACAACAAGGTGTTAGAGTTGAAAGGAAACATAAGGGTCTTTTGCAGGTGTAGGCCTCTAAACACTGAGGAAGTTTCAGCAGGAGCTTCAATGGCTATTGACTTTGAATCTGAGAAAGAAGGTGAGCTTGTTGTCAAGTCAAATGGGGTTACAAGAATGACCTTTAAGTTTGATGCAGTTTTCGGCCCTCAAGCAGACCAAGAAGTGTACAACGAGCAAATACGGGATCTACTTGTTCCAGGGAATCAGCCGGGAGCAGTTGCTAAAAGAATGCTGGACTTGGAGCATCTTTTGCCAGCTCCAATTGGTATTGTTGACTGCAAGACACAAATGGTGGAACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Kinesin Malectin

Protein Analysis

203

Amino Acids

22.85

Weight (kDa)

8.57

Isoelectric Point (pI)

41.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Microtub_bd PF16796 83 - 165 9.5e-15 Microtubule binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 303
Acc36I ACCTGC 1 cut(s) 303
AccII CGCG 1 cut(s) 123
AciI CCGC 2 cut(s) 39, 175
AclWI GGATC 2 cut(s) 104, 501
AcoI YGGCCR 1 cut(s) 9
AcuI CTGAAG 1 cut(s) 245
AfaI GTAC 1 cut(s) 476
AfiI CCNNNNNNNGG 2 cut(s) 44, 96
AflIII ACRYGT 1 cut(s) 202
AgsI TTSAA 4 cut(s) 95, 289, 357, 374
AjnI CCWGG 1 cut(s) 505
AluBI AGCT 4 cut(s) 119, 353, 394, 566
AluI AGCT 4 cut(s) 119, 353, 394, 566
AlwI GGATC 2 cut(s) 104, 501
AoxI GGCC 6 cut(s) 9, 46, 103, 246, 320, 451
ArsI GACNNNNNNTTYG 2 cut(s) 108, 140
Asp700I GAANNNNTTC 1 cut(s) 75
AspS9I GGNCC 3 cut(s) 47, 246, 452
AsuC2I CCSGG 2 cut(s) 64, 519
AsuHPI GGTGA 1 cut(s) 401
BanII GRGCYC 1 cut(s) 165
BbsI GAAGAC 1 cut(s) 233
BccI CCATC 1 cut(s) 186
BceAI ACGGC 1 cut(s) 24
BciT130I CCWGG 1 cut(s) 507
BcnI CCSGG 2 cut(s) 64, 519
BfaI CTAG 1 cut(s) 21
BfuAI ACCTGC 1 cut(s) 303
BisI GCNGC 1 cut(s) 175
BlsI GCNGC 1 cut(s) 176
Bme1390I CCNGG 3 cut(s) 64, 507, 519
BmgT120I GGNCC 3 cut(s) 47, 246, 452
BmiI GGNNCC 2 cut(s) 247, 606
BmrFI CCNGG 3 cut(s) 64, 507, 519
BmsI GCATC 2 cut(s) 430, 562
BpiI GAAGAC 1 cut(s) 233
BpuEI CTTGAG 1 cut(s) 441
BpuMI CCSGG 2 cut(s) 64, 519
BsaJI CCNNGG 1 cut(s) 506
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 96
BseBI CCWGG 1 cut(s) 507
BseDI CCNNGG 1 cut(s) 506
BseLI CCNNNNNNNGG 2 cut(s) 44, 96
BseMII CTCAG 3 cut(s) 72, 324, 369
BseYI CCCAGC 1 cut(s) 49
Bsh1236I CGCG 1 cut(s) 123
BshFI GGCC 6 cut(s) 11, 48, 105, 248, 322, 453
BsiSI CCGG 2 cut(s) 64, 518
BslFI GGGAC 1 cut(s) 21
BslI CCNNNNNNNGG 2 cut(s) 44, 96
BsmFI GGGAC 1 cut(s) 21
BsmI GAATGC 1 cut(s) 543
BsnI GGCC 6 cut(s) 11, 48, 105, 248, 322, 453
Bsp1286I GDGCHC 1 cut(s) 165
Bsp1407I TGTACA 1 cut(s) 474
Bsp143I GATC 3 cut(s) 109, 220, 493
BspACI CCGC 2 cut(s) 39, 175
BspANI GGCC 6 cut(s) 11, 48, 105, 248, 322, 453
BspCNI CTCAG 3 cut(s) 71, 325, 370
BspFNI CGCG 1 cut(s) 123
BspLI GGNNCC 2 cut(s) 247, 606
BspMI ACCTGC 1 cut(s) 303
BspPI GGATC 2 cut(s) 104, 501
BsrGI TGTACA 1 cut(s) 474
BssECI CCNNGG 1 cut(s) 506
BssMI GATC 3 cut(s) 109, 220, 493
Bst2UI CCWGG 1 cut(s) 507
Bst4CI ACNGT 1 cut(s) 16
BstAPI GCANNNNNTGC 1 cut(s) 559
BstAUI TGTACA 1 cut(s) 474
BstC8I GCNNGC 2 cut(s) 121, 564
BstDEI CTNAG 4 cut(s) 58, 333, 378, 609
BstFNI CGCG 1 cut(s) 123
BstKTI GATC 3 cut(s) 112, 223, 496
BstMBI GATC 3 cut(s) 109, 220, 493
BstMWI GCNNNNNNNGC 4 cut(s) 59, 180, 359, 559
BstNI CCWGG 1 cut(s) 507
BstNSI RCATGY 1 cut(s) 206
BstSCI CCNGG 3 cut(s) 62, 505, 517
BstUI CGCG 1 cut(s) 123
BstV2I GAAGAC 1 cut(s) 233
BstX2I RGATCY 1 cut(s) 493
BstYI RGATCY 1 cut(s) 493
BsuRI GGCC 6 cut(s) 11, 48, 105, 248, 322, 453
BtgZI GCGATG 1 cut(s) 164
BtsIMutI CAGTG 1 cut(s) 330
BveI ACCTGC 1 cut(s) 303
Cac8I GCNNGC 2 cut(s) 121, 564
Cfr13I GGNCC 3 cut(s) 47, 246, 452
CseI GACGC 1 cut(s) 112
Csp6I GTAC 1 cut(s) 475
CviAII CATG 1 cut(s) 203
CviQI GTAC 1 cut(s) 475
DdeI CTNAG 4 cut(s) 58, 333, 378, 609
DpnI GATC 3 cut(s) 111, 222, 495
DpnII GATC 3 cut(s) 109, 220, 493
EaeI YGGCCR 1 cut(s) 9
Eco147I AGGCCT 1 cut(s) 322
Eco24I GRGCYC 1 cut(s) 165
Eco57I CTGAAG 1 cut(s) 245
EcoRII CCWGG 1 cut(s) 505
EcoT38I GRGCYC 1 cut(s) 165
FaeI CATG 1 cut(s) 206
FaiI YATR 5 cut(s) 29, 144, 204, 216, 299
FalI AAGNNNNNCTT 2 cut(s) 378, 410
FaqI GGGAC 1 cut(s) 21
FatI CATG 1 cut(s) 202
FauI CCCGC 1 cut(s) 46
Fnu4HI GCNGC 1 cut(s) 175
FriOI GRGCYC 1 cut(s) 165
Fsp4HI GCNGC 1 cut(s) 175
FspBI CTAG 1 cut(s) 21
GluI GCNGC 1 cut(s) 175
GsaI CCCAGC 1 cut(s) 53
HaeIII GGCC 6 cut(s) 11, 48, 105, 248, 322, 453
HapII CCGG 2 cut(s) 64, 518
HgaI GACGC 1 cut(s) 112
Hin1II CATG 1 cut(s) 206
HincII GTYRAC 1 cut(s) 583
HindII GTYRAC 1 cut(s) 583
HinfI GANTC 2 cut(s) 374, 511
HpaII CCGG 2 cut(s) 64, 518
HphI GGTGA 1 cut(s) 401
Hpy166II GTNNAC 2 cut(s) 475, 583
Hpy188I TCNGA 2 cut(s) 225, 379
Hpy8I GTNNAC 2 cut(s) 475, 583
Hpy99I CGWCG 2 cut(s) 10, 158
HpyAV CCTTC 3 cut(s) 101, 236, 380
HpyCH4III ACNGT 1 cut(s) 16
HpyCH4IV ACGT 1 cut(s) 256
HpyCH4V TGCA 4 cut(s) 214, 312, 443, 588
HpyF10VI GCNNNNNNNGC 4 cut(s) 59, 180, 359, 559
HpyF3I CTNAG 4 cut(s) 58, 333, 378, 609
HpySE526I ACGT 1 cut(s) 256
Hsp92II CATG 1 cut(s) 206
Kzo9I GATC 3 cut(s) 109, 220, 493
LmnI GCTCC 4 cut(s) 350, 521, 550, 571
LweI GCATC 2 cut(s) 430, 562
MaeI CTAG 1 cut(s) 21
MaeII ACGT 1 cut(s) 256
MaeIII GTNAC 3 cut(s) 128, 185, 415
MalI GATC 3 cut(s) 111, 222, 495
MboI GATC 3 cut(s) 109, 220, 493
MboII GAAGA 1 cut(s) 238
MfeI CAATTG 1 cut(s) 570
MflI RGATCY 1 cut(s) 493
MhlI GDGCHC 1 cut(s) 165
MluCI AATT 1 cut(s) 570
MnlI CCTC 5 cut(s) 65, 116, 328, 333, 465
MroXI GAANNNNTTC 1 cut(s) 75
MseI TTAA 2 cut(s) 194, 432
MspI CCGG 2 cut(s) 64, 518
MspR9I CCNGG 3 cut(s) 64, 507, 519
MunI CAATTG 1 cut(s) 570
Mva1269I GAATGC 1 cut(s) 543
MvaI CCWGG 1 cut(s) 507
MvnI CGCG 1 cut(s) 123
MwoI GCNNNNNNNGC 4 cut(s) 59, 180, 359, 559
NciI CCSGG 2 cut(s) 64, 519
NdeII GATC 3 cut(s) 109, 220, 493
NlaIII CATG 1 cut(s) 206
NlaIV GGNNCC 2 cut(s) 247, 606
NmuCI GTSAC 1 cut(s) 128
NspI RCATGY 1 cut(s) 206
PaqCI CACCTGC 1 cut(s) 303
PceI AGGCCT 1 cut(s) 322
PciI ACATGT 1 cut(s) 202
PctI GAATGC 1 cut(s) 543
PdmI GAANNNNTTC 1 cut(s) 75
PfeI GAWTC 2 cut(s) 374, 511
PkrI GCNGC 1 cut(s) 176
PscI ACATGT 1 cut(s) 202
Psp6I CCWGG 1 cut(s) 505
PspFI CCCAGC 1 cut(s) 49
PspGI CCWGG 1 cut(s) 505
PspN4I GGNNCC 2 cut(s) 247, 606
PspPI GGNCC 3 cut(s) 47, 246, 452
PsuI RGATCY 1 cut(s) 493
RsaI GTAC 1 cut(s) 476
RsaNI GTAC 1 cut(s) 475
SaqAI TTAA 2 cut(s) 194, 432
SatI GCNGC 1 cut(s) 175
Sau3AI GATC 3 cut(s) 109, 220, 493
Sau96I GGNCC 3 cut(s) 47, 246, 452
ScrFI CCNGG 3 cut(s) 64, 507, 519
SduI GDGCHC 1 cut(s) 165
SfaNI GCATC 2 cut(s) 430, 562
SmlI CTYRAG 1 cut(s) 456
SmoI CTYRAG 1 cut(s) 456
Sse9I AATT 1 cut(s) 570
SseBI AGGCCT 1 cut(s) 322
SsiI CCGC 2 cut(s) 39, 175
SspMI CTAG 1 cut(s) 21
StuI AGGCCT 1 cut(s) 322
StyD4I CCNGG 3 cut(s) 62, 505, 517
TaaI ACNGT 1 cut(s) 16
TaiI ACGT 1 cut(s) 259
TaqI TCGA 2 cut(s) 108, 240
TasI AATT 1 cut(s) 570
TatI WGTACW 1 cut(s) 474
TauI GCSGC 1 cut(s) 177
TfiI GAWTC 2 cut(s) 374, 511
Tru1I TTAA 2 cut(s) 194, 432
Tru9I TTAA 2 cut(s) 194, 432
TscAI CASTG 1 cut(s) 337
TseFI GTSAC 1 cut(s) 128
Tsp45I GTSAC 1 cut(s) 128
TspDTI ATGAA 1 cut(s) 68
TspRI CASTG 1 cut(s) 337
XceI RCATGY 1 cut(s) 206
XmnI GAANNNNTTC 1 cut(s) 75
XspI CTAG 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.