Rorug05G0314400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0004872
Physical Location & Seq
Forward (+)
37311926 .. 37313376
1451 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0314400.1

Sequence Viewer

Length: 354 bp
ATGGGTGGAGGAACAGGCACTGGTGGGGCTCCTGTGGTTGCAAAAATTGCAAAGTCCCTGGTTCTGAGGAAAAATGTTGACACCCTAACTGTTATTCCTAACGACAAATTATTGACTGAAGTTTCACAGTTGACACCAGTAACTGAGGCGTTTAATTTAGCTGATGATGTTCTTCAGCAGGGTGTCTGTGGTATCTCTGATGTAGTCACGGTTCCAGGTCTTGTCAATGTTGATTTTGCTGATGTAAGAGCTATCATGAAAGATGCTGGTTCCTCGCTTATGGGAATAGGAACCGGAACTGGGAAGGCGAGGGCCGCAGTTGCTGCATTCAAGGCCATAGATTACCTTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

11.86

Weight (kDa)

5.15

Isoelectric Point (pI)

12.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 315
AcuI CTGAAG 2 cut(s) 138, 158
AfiI CCNNNNNNNGG 1 cut(s) 300
AgsI TTSAA 1 cut(s) 331
AjnI CCWGG 2 cut(s) 57, 214
AluBI AGCT 2 cut(s) 161, 251
AluI AGCT 2 cut(s) 161, 251
AlwNI CAGNNNCTG 3 cut(s) 20, 143, 323
AoxI GGCC 2 cut(s) 312, 333
ApeKI GCWGC 1 cut(s) 323
AspS9I GGNCC 1 cut(s) 312
BanII GRGCYC 1 cut(s) 31
BbvI GCAGC 1 cut(s) 310
BciT130I CCWGG 2 cut(s) 59, 216
BisI GCNGC 2 cut(s) 315, 324
BlsI GCNGC 2 cut(s) 316, 325
Bme1390I CCNGG 2 cut(s) 59, 216
BmgT120I GGNCC 1 cut(s) 312
BmiI GGNNCC 4 cut(s) 30, 213, 271, 292
BmrFI CCNGG 2 cut(s) 59, 216
BmrI ACTGGG 1 cut(s) 309
BmsI GCATC 1 cut(s) 253
BmuI ACTGGG 1 cut(s) 309
BsaJI CCNNGG 1 cut(s) 57
BsaWI WCCGGW 1 cut(s) 293
Bsc4I CCNNNNNNNGG 1 cut(s) 300
Bse1I ACTGG 3 cut(s) 25, 137, 304
BseBI CCWGG 2 cut(s) 59, 216
BseDI CCNNGG 1 cut(s) 57
BseLI CCNNNNNNNGG 1 cut(s) 300
BseMII CTCAG 2 cut(s) 56, 135
BseNI ACTGG 3 cut(s) 25, 137, 304
BseXI GCAGC 1 cut(s) 310
BshFI GGCC 2 cut(s) 314, 335
BsiSI CCGG 1 cut(s) 294
BslFI GGGAC 1 cut(s) 40
BslI CCNNNNNNNGG 1 cut(s) 300
BsmFI GGGAC 1 cut(s) 40
BsmI GAATGC 1 cut(s) 326
BsnI GGCC 2 cut(s) 314, 335
Bsp1286I GDGCHC 1 cut(s) 31
BspACI CCGC 1 cut(s) 315
BspANI GGCC 2 cut(s) 314, 335
BspCNI CTCAG 2 cut(s) 57, 136
BspHI TCATGA 1 cut(s) 255
BspLI GGNNCC 4 cut(s) 30, 213, 271, 292
BsrI ACTGG 3 cut(s) 25, 137, 304
BssECI CCNNGG 1 cut(s) 57
Bst2UI CCWGG 2 cut(s) 59, 216
Bst4CI ACNGT 3 cut(s) 91, 129, 211
BstAPI GCANNNNNTGC 2 cut(s) 47, 323
BstDEI CTNAG 2 cut(s) 65, 144
BstMWI GCNNNNNNNGC 5 cut(s) 47, 314, 320, 323, 332
BstNI CCWGG 2 cut(s) 59, 216
BstSCI CCNGG 2 cut(s) 57, 214
BstV1I GCAGC 1 cut(s) 310
BsuRI GGCC 2 cut(s) 314, 335
BtsIMutI CAGTG 1 cut(s) 18
CaiI CAGNNNCTG 3 cut(s) 20, 143, 323
CciI TCATGA 1 cut(s) 255
Cfr13I GGNCC 1 cut(s) 312
CviAII CATG 1 cut(s) 256
CviJI RGCY 5 cut(s) 29, 161, 251, 314, 335
CviKI_1 RGCY 5 cut(s) 29, 161, 251, 314, 335
DdeI CTNAG 2 cut(s) 65, 144
Eco24I GRGCYC 1 cut(s) 31
Eco57I CTGAAG 2 cut(s) 138, 158
EcoRII CCWGG 2 cut(s) 57, 214
EcoT38I GRGCYC 1 cut(s) 31
FaeI CATG 1 cut(s) 259
FaiI YATR 3 cut(s) 257, 281, 338
FaqI GGGAC 1 cut(s) 40
FatI CATG 1 cut(s) 255
Fnu4HI GCNGC 2 cut(s) 315, 324
FriOI GRGCYC 1 cut(s) 31
Fsp4HI GCNGC 2 cut(s) 315, 324
GluI GCNGC 2 cut(s) 315, 324
HaeIII GGCC 2 cut(s) 314, 335
HapII CCGG 1 cut(s) 294
Hin1II CATG 1 cut(s) 259
HincII GTYRAC 2 cut(s) 79, 132
HindII GTYRAC 2 cut(s) 79, 132
HpaII CCGG 1 cut(s) 294
Hpy166II GTNNAC 2 cut(s) 79, 132
Hpy188I TCNGA 2 cut(s) 66, 199
Hpy188III TCNNGA 1 cut(s) 256
Hpy8I GTNNAC 2 cut(s) 79, 132
HpyAV CCTTC 1 cut(s) 298
HpyCH4III ACNGT 3 cut(s) 91, 129, 211
HpyCH4V TGCA 3 cut(s) 41, 50, 326
HpyF10VI GCNNNNNNNGC 5 cut(s) 47, 314, 320, 323, 332
HpyF3I CTNAG 2 cut(s) 65, 144
Hsp92II CATG 1 cut(s) 259
LmnI GCTCC 1 cut(s) 34
Lsp1109I GCAGC 1 cut(s) 310
LweI GCATC 1 cut(s) 253
MaeIII GTNAC 2 cut(s) 139, 205
MboII GAAGA 1 cut(s) 164
MhlI GDGCHC 1 cut(s) 31
MluCI AATT 3 cut(s) 45, 107, 154
MnlI CCTC 4 cut(s) 60, 139, 283, 303
MseI TTAA 1 cut(s) 153
MspI CCGG 1 cut(s) 294
MspR9I CCNGG 2 cut(s) 59, 216
Mva1269I GAATGC 1 cut(s) 326
MvaI CCWGG 2 cut(s) 59, 216
MwoI GCNNNNNNNGC 5 cut(s) 47, 314, 320, 323, 332
NlaIII CATG 1 cut(s) 259
NlaIV GGNNCC 4 cut(s) 30, 213, 271, 292
NmuCI GTSAC 1 cut(s) 205
PagI TCATGA 1 cut(s) 255
PctI GAATGC 1 cut(s) 326
PkrI GCNGC 2 cut(s) 316, 325
Psp6I CCWGG 2 cut(s) 57, 214
PspGI CCWGG 2 cut(s) 57, 214
PspN4I GGNNCC 4 cut(s) 30, 213, 271, 292
PspPI GGNCC 1 cut(s) 312
PsrI GAACNNNNNNTAC 2 cut(s) 195, 227
PstNI CAGNNNCTG 3 cut(s) 20, 143, 323
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 2 cut(s) 315, 324
Sau96I GGNCC 1 cut(s) 312
ScrFI CCNGG 2 cut(s) 59, 216
SduI GDGCHC 1 cut(s) 31
SetI ASST 4 cut(s) 163, 220, 253, 348
SfaNI GCATC 1 cut(s) 253
Sse9I AATT 3 cut(s) 45, 107, 154
SsiI CCGC 1 cut(s) 315
StyD4I CCNGG 2 cut(s) 57, 214
TaaI ACNGT 3 cut(s) 91, 129, 211
TasI AATT 3 cut(s) 45, 107, 154
TauI GCSGC 1 cut(s) 317
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TscAI CASTG 1 cut(s) 25
TseFI GTSAC 1 cut(s) 205
TseI GCWGC 1 cut(s) 323
Tsp45I GTSAC 1 cut(s) 205
TspDTI ATGAA 1 cut(s) 272
TspRI CASTG 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.