Rh1DG034400
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Forward (+)
5105887 .. 5106259
373 bp
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UTR
Exon/CDS
Intron
Rh1DG034400.1

Sequence Viewer

Length: 279 bp
ATGGCTATTGACTTTGAATCTAAGAAAGAAGGTGAGCTTGTTGTCAAGTCAAATGGGGTTACAAGAAGGACCTTTAAGTTTGATGCAGTTTTCGGCCCTCAAGCAGACCAAGCTGATGTCTTCGAAGACACAGCTCCATTTGCAACCTCAGTTCTAGATGGGTACAATGTCTGCATATTTGCTTACGGGCAGACTGAAAGTGGAAAAACCTTTACAATGGAGGGAATGGAAGAAGCTCGGGAGTCAATTTTAGGACTCTTGAGCAACTGTTTTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

92

Amino Acids

10.11

Weight (kDa)

4.37

Isoelectric Point (pI)

31.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Microtub_bd PF16796 2 - 82 1.1e-21 Microtubule binding
Kinesin PF00225 7 - 81 2.6e-24 Kinesin motor domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 164
AgsI TTSAA 1 cut(s) 17
AluBI AGCT 4 cut(s) 37, 113, 134, 236
AluI AGCT 4 cut(s) 37, 113, 134, 236
Ama87I CYCGRG 1 cut(s) 237
AoxI GGCC 1 cut(s) 94
AspS9I GGNCC 2 cut(s) 69, 95
AsuHPI GGTGA 1 cut(s) 44
AsuII TTCGAA 1 cut(s) 123
AvaI CYCGRG 1 cut(s) 237
AvaII GGWCC 1 cut(s) 69
BbsI GAAGAC 2 cut(s) 112, 132
BccI CCATC 1 cut(s) 152
BfaI CTAG 1 cut(s) 155
Bme18I GGWCC 1 cut(s) 69
BmeT110I CYCGRG 1 cut(s) 237
BmgT120I GGNCC 2 cut(s) 69, 95
BmsI GCATC 1 cut(s) 73
BpiI GAAGAC 2 cut(s) 112, 132
Bpu14I TTCGAA 1 cut(s) 123
BpuEI CTTGAG 1 cut(s) 84
BseMII CTCAG 1 cut(s) 162
BshFI GGCC 1 cut(s) 96
BsiHKCI CYCGRG 1 cut(s) 237
BsnI GGCC 1 cut(s) 96
BsoBI CYCGRG 1 cut(s) 237
Bsp119I TTCGAA 1 cut(s) 123
BspANI GGCC 1 cut(s) 96
BspCNI CTCAG 1 cut(s) 161
BspT104I TTCGAA 1 cut(s) 123
Bst4CI ACNGT 1 cut(s) 269
BstBI TTCGAA 1 cut(s) 123
BstDEI CTNAG 2 cut(s) 21, 148
BstMWI GCNNNNNNNGC 2 cut(s) 110, 140
BstV2I GAAGAC 2 cut(s) 112, 132
BsuRI GGCC 1 cut(s) 96
Cfr13I GGNCC 2 cut(s) 69, 95
Csp6I GTAC 1 cut(s) 163
CviJI RGCY 6 cut(s) 5, 37, 96, 113, 134, 236
CviKI_1 RGCY 6 cut(s) 5, 37, 96, 113, 134, 236
CviQI GTAC 1 cut(s) 163
DdeI CTNAG 2 cut(s) 21, 148
Eco47I GGWCC 1 cut(s) 69
Eco88I CYCGRG 1 cut(s) 237
EcoO109I RGGNCCY 1 cut(s) 69
FaiI YATR 2 cut(s) 176, 277
FalI AAGNNNNNCTT 2 cut(s) 21, 53
FspBI CTAG 1 cut(s) 155
HaeIII GGCC 1 cut(s) 96
HinfI GANTC 3 cut(s) 17, 242, 255
HphI GGTGA 1 cut(s) 44
Hpy188III TCNNGA 3 cut(s) 155, 239, 259
HpyAV CCTTC 2 cut(s) 23, 60
HpyCH4III ACNGT 1 cut(s) 269
HpyCH4V TGCA 3 cut(s) 86, 143, 174
HpyF10VI GCNNNNNNNGC 2 cut(s) 110, 140
HpyF3I CTNAG 2 cut(s) 21, 148
LmnI GCTCC 1 cut(s) 139
LweI GCATC 1 cut(s) 73
MaeI CTAG 1 cut(s) 155
MaeIII GTNAC 1 cut(s) 58
MboII GAAGA 3 cut(s) 112, 137, 242
MluCI AATT 1 cut(s) 246
MlyI GAGTC 2 cut(s) 249, 251
MnlI CCTC 3 cut(s) 108, 157, 214
MseI TTAA 1 cut(s) 75
MwoI GCNNNNNNNGC 2 cut(s) 110, 140
NspV TTCGAA 1 cut(s) 123
PfeI GAWTC 1 cut(s) 17
PleI GAGTC 2 cut(s) 249, 250
PpsI GAGTC 2 cut(s) 249, 250
PpuMI RGGWCCY 1 cut(s) 69
Psp5II RGGWCCY 1 cut(s) 69
PspPI GGNCC 2 cut(s) 69, 95
PspPPI RGGWCCY 1 cut(s) 69
RsaI GTAC 1 cut(s) 164
RsaNI GTAC 1 cut(s) 163
SaqAI TTAA 1 cut(s) 75
Sau96I GGNCC 2 cut(s) 69, 95
SchI GAGTC 2 cut(s) 249, 251
SetI ASST 8 cut(s) 34, 39, 74, 115, 136, 149, 212, 238
SfaNI GCATC 1 cut(s) 73
SfuI TTCGAA 1 cut(s) 123
SinI GGWCC 1 cut(s) 69
SmlI CTYRAG 2 cut(s) 99, 259
SmoI CTYRAG 2 cut(s) 99, 259
Sse9I AATT 1 cut(s) 246
SspMI CTAG 1 cut(s) 155
TaaI ACNGT 1 cut(s) 269
TaqI TCGA 1 cut(s) 123
TasI AATT 1 cut(s) 246
TfiI GAWTC 1 cut(s) 17
Tru1I TTAA 1 cut(s) 75
Tru9I TTAA 1 cut(s) 75
VpaK11BI GGWCC 1 cut(s) 69
XbaI TCTAGA 1 cut(s) 154
XspI CTAG 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.