Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001516

Physical Location & Seq

Genomic Coordinates Forward (+)

36329123 .. 36347135

Gene Structure 18013 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1229900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3411 bp

ATGCTCAGCCTGCGGCCTCGCCGCGATTCCACTCCGTATACTACCAAATGGCAGAACAAGTTTGAGGAGAATTTGGAGCAGTGGCCACATCTGAAGGAGTTGGTGCAGTGCTATACAACTGACTGGGTGAAGGATGACAACAAGTATGGTCACTACGAGAGTGTTGGACCGCCCTCATTCCAGAACCAGATTTATGAGGGTCCTGACACTGACATTGAAACCGAGATGCATCTTGCAAGTGCAAGGCGAACCAAGGTGGAAGATACTACTGATGATGATGTCCCCAGTACCTCGGGAAGACAATTCACAGAGGCTACTGTATCTGATTCAGTACAGTCCAATGATCCAAAGCATTTTGGTCAATCTCCCCTTCCTGCCTATGAACCAGCATTTGATTGGGAAAATGAAAGGTCAATGATATTCGGACAAAGGATTCCAGAAACTCCAATATCTCATGGATTGAAGATCTCAGTGAAGGTTCTTTCCCTATCATTTCAAGCGGGATTAGCTGAGCCATTTTATGGTACAATGTGCTTATACAATAGGGAGAGAAGAGAAAAATTGTCAGAGGACTTTTATTTTCGTCATGCACCAACTGAAAGGCAGGATATTTCTATTGAACCTCGCGGAATCTTCTATTTAGATGCTCCATCATCATCAGTTTGTCTGCTAATCCAGTTAGAGAAGCATGCCACAGAAGAAGGCGGGGTTGCACCTTCAGTTTATTCACGCAAAGAACCAGTACACTTGACTGAGAAAGAAAAGCAAAAACTGCAGGTGTGGTCTCAAATAATGCCTTACAGAGAGTCCTTCGCCTGGGCTATTGTTTCATTATTTGATAACAGCATTGGTGCAGCTTCTGGTGGGTCTGCTTCCCCAAGCAGTCCTCTTGCTCCTAGTATATCTGGTACAAGTTCTCATGATGGTGTGTTTGAGCCTAGTGCAAAGGTCACATTAGATGGGAAGCTAGGTTATTCAAGTCGAAGCTCTGTTGTTGTCGAAATATCAAACTTAAATAAAGTTAAAGAATGCTATACTGAAGACTCACTTCAGGATCCCAAACGCAAGATTCATAAACCTGTGAAAGGTGTTTTGAGGCTGGAAATCGAGAAGCACCAGAATGACACTGTTGACTTGGAAAATGTATCAGAAAGTGGTAGTGTTACCAATGATTCTATTGATGACCGCATTACCGATTCCACATTTGGGAAGCTCCCAAGTAATGGTTTGGATGGTCCTCAGGGTAGCAGCTCTAAGTGGAATTCTTCTGACACCAAAGAAATATCTGGAAATGGACCAAATGCTTCAATTCCTAGTACTGATGATTTTCAAGCTTTCGACTTCCGTACGACAACAAGAAATGAGCCTTTCTTGCAGCTTTTTCATTGCCTATATGTATATCCCATGACTGTTAGTTTGAGTCGGAAGAGGAATTTGTTCATAAGAGTTGAACTGCGGGAGGATGATAATGATATTCGTAGACAGCCTTTGGAGGCAATGTATCCAAGGGAACCAGGTGCATCACTACAGAAGTGGGCTCAAACACAAGTGACTGTTGGGGCTAGGGTGGCCTGCTACCATGATGAGATCAAACTCTCCCTCCCTGCTACCTGGACACCAACACATCATCTTTTATTTACTTTCTTTCATGTAGATCTTCAAACAAAATTGGAAGCTCCAAAGCCTGTAGTAATTGGATACGCGGCACTTCCATTATCCACGCATGCTCAGGTGCGCTCTGAAATTTCTTTGCCAATTATGAGAGAGCTGGTTCCACATTATCTCCAGGATATGGGCAGAGAGAGGTTGGATTATTTGGAAGATGGAAAGAATATCTTTCGATTGCGCTTAAGACTATGTTCGTCGCTGTATCCTATCAATGAGCGCATAAGAGATTTTTTTCTTGAATACGATAGGCACACTCTTCGAACAAGTGCACCTTGGGGTTCTGAACTTCTGGAGGCTATTAACAGTTTGAAGAATGTTGATTCCGTTGCTTTGCTTCAGTTTCTACATCCAATTTTGAATATGCTTCTCCATCTAATAGGAAACGGTGGAGAAACCCTCCAGGTTGCAGCTTTCAGAGCCATGGTTAATATCGTCACCCGGGTGCAGCAAGAGTCGGTTGATGATGCTGAGAGAAATCATTTCCTAGTTAATTATGTTGATTACGCTTTTGATGACTTTGGGGGTCGTCAACCACCAGTTTATCCTGGTTTGTCAACTGTTTGGGGGAGTTTGGCTCGTAGTAAGGCTAAAGGATATCGTGTTGGACCTGTGTATGATGATGTTTTGGCAATGGCCTGGTTTTTCCTTGAGCTAATTGTCAAGTCAATGGCATTGGAGAAGATGCGTCTTTTCTATCATAATATTCCTTTAGGTGAAGATATTCCGCCTATGCAATTGAAAGAAGGTGTATTCAGATGTATAATGCAGTTGTATGATTGCCTACTAACTGAAGTGCATGAACGTTGTAAGAAGGGATTAAGCTTAGCAAAGCGTTTAAACAGCAGTTTAGCTTTCTTTTGTTATGACCTCTTGTCCATCATTGAACCTCGCCAAGTTTTTGAATTGGTGTCCTTGTACCTGGACAAGTTTTCTGGGGTTTGCCAACTGGTTCTGCATGATTGCAAGCTCACATTTCTACAAATTATATGCGATCACGACCTTTTTGTGGAAATGCCTGGGAGAGACCCTTCTGATAGGAATTACCTTTCGTCTGTTTTAATACAAGAGCTATTTCTTACGTGGGATCATGACGATTTGTCTCTGCGAGCAAAGGCAGCTAGAATTTTGGTAGTCCTTTTGTGCAAGCATGAGTTTGATGCACGATACCAAAAGCCTGAAGATAAACTATATATAGCCCAGCTCTATTTTCCACTTATTGGACAGATTCTTGATGAAATGCCTGTATTTTACAACCTCAATTCTGTTGAAAAGCGTGAAGTTTTGGTCGCAATTTTGCAAATTGTACGGAACCTTGATGATTCATCACTTGTCAAGGCGTGGCAGCAGAGCATTGCTAGAACTAGATTGTTTTTCAAACTCATGGAGGAATGCCTTGTTCTATTTGAGCACAGAAAACCTGCTGATGGCATGCTTATTGGATCTAGTTCTCGCAGTCCTGTTGTTGGCGATGCCCCTGCGTCCCCCAAGTATTCTGATAGACTATCCCCTGCGATCAACAACTATCTGTCTGAAGCATCTAGACAAGAAGTCAGGCCTCAGGGTACTCCTGAAAACAGTTATTCGTGGCAGAGAGTAAATTCTCAGTTAAGCTCCCCTAGCCAGCCGTATTCCTTGAGAGAAGCACTGGCTCAGGCACAATCTTCTAGAATTGGAGCTTCTGCTCAAGCATTAAGAGAATCTTTGCATCCAATATTGAGACAAAAATTAGTAAGTTTTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0006810 GO:0008064 GO:0008150 GO:0008360 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009958 GO:0009966 GO:0009987 GO:0010646 GO:0010928 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0017016 GO:0017048 GO:0019898 GO:0019899 GO:0022603 GO:0022604 GO:0023051 GO:0030832 GO:0031267 GO:0032535 GO:0032956 GO:0032970 GO:0033043 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051020 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0065007 GO:0065008 GO:0065009 GO:0070971 GO:0071840 GO:0071944 GO:0090066 GO:0098772 GO:0110053 GO:1902903

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DHR-2 DOCK-C2

Protein Analysis

1137

Amino Acids

129.12

Weight (kDa)

5.82

Isoelectric Point (pI)

52.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DOCK-C2	PF14429	459 - 628	4.4e-33	C2 domain in Dock180 and Zizimin proteins

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0001516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16340 AT4G16340
fragaria_vesca	FvH4_3g14770 FvH4_3g14770 FvH4_3g14770
malus_domestica	MD05G1229900.v1.1 MD05G1233200.v1.1 MD10G1209700.v1.1
prunus_persica	Prupe.3G108400_v2.0.a1 Prupe.4G132800_v2.0.a1
pyrus_communis	pycom05g21080 pycom05g21090 pycom10g17800 pycom10g17820
rosa_chinensis	RchiOBHm_Chr1g0327621 RchiOBHm_Chr3g0473981 RchiOBHm_Chr5g0024291 RchiOBHm_Chr5g0024301 RchiOBHm_Chr5g0024371 RchiOBHm_Chr5g0024381
rosa_laevigata	RLG00000029979 RLG00000032795 RLG00000036969
rosa_multiflora	Rmu_co8048528.1_g000001 Rmu_co8378897.1_g000002 Rmu_sc0005861.1_g000003 Rmu_sc0015218.1_g000005 Rmu_ssc0000042.1_g000009
rosa_roxburghii	Rroxscaffold_1G00054850 Rroxscaffold_1G00054890 Rroxscaffold_1G00055790 Rroxscaffold_1G00055850 Rroxscaffold_4G00322510
rosa_rugosa	Rorug01G0068800 Rorug05G0083000 Rorug05G0083100
rosa_samantha	Rh3AG187600 Rh3BG216300 Rh3CG212800 Rh5AG173700 Rh5BG170500 Rh5BG170900 Rh5BG171900 Rh5BG172000 Rh5CG186800 Rh5CG187500 Rh5CG187600 Rh5DG173100
rosa_wichuraiana	Rw0G000890 Rw3G017190 Rw5G015680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	766
Acc36I	ACCTGC	2 cut(s)	766, 3094
AccB7I	CCANNNNNTGG	4 cut(s)	521, 1223, 1792, 2885
AccI	GTMKAC	2 cut(s)	38, 1480
AccII	CGCG	3 cut(s)	24, 627, 1703
AclI	AACGTT	1 cut(s)	2470
AclWI	GGATC	5 cut(s)	338, 1049, 1062, 2760, 3115
AcoI	YGGCCR	1 cut(s)	83
AcsI	RAATTY	6 cut(s)	70, 1261, 1432, 1743, 2790, 3265
AcuI	CTGAAG	8 cut(s)	113, 702, 1034, 1059, 1988, 2478, 2865, 3219
AflII	CTTAAG	1 cut(s)	1849
AhdI	GACNNNNNGTC	3 cut(s)	2539, 2764, 3215
AjnI	CCWGG	9 cut(s)	815, 1513, 1610, 1785, 2067, 2212, 2303, 2586, 2683
AleI	CACNNNNGTG	1 cut(s)	2108
Alw21I	GWGCWC	2 cut(s)	1939, 3078
Alw26I	GTCTC	4 cut(s)	789, 2685, 2772, 3379
Alw44I	GTGCAC	1 cut(s)	1935
AlwI	GGATC	5 cut(s)	338, 1049, 1062, 2760, 3115
AlwNI	CAGNNNCTG	1 cut(s)	860
Ama87I	CYCGRG	2 cut(s)	292, 2106
AoxI	GGCC	5 cut(s)	14, 83, 1569, 2301, 3221
ApaLI	GTGCAC	1 cut(s)	1935
ApeKI	GCWGC	7 cut(s)	854, 1248, 1375, 2075, 2113, 2783, 3010
ApoI	RAATTY	6 cut(s)	70, 1261, 1432, 1743, 2790, 3265
ArsI	GACNNNNNNTTYG	2 cut(s)	1399, 1431
Asp700I	GAANNNNTTC	2 cut(s)	1436, 2388
AspLEI	GCGC	3 cut(s)	1737, 1848, 1887
AspS9I	GGNCC	5 cut(s)	167, 200, 1235, 1295, 2273
AsuC2I	CCSGG	2 cut(s)	2107, 2108
AsuHPI	GGTGA	3 cut(s)	139, 2095, 2393
AsuII	TTCGAA	1 cut(s)	1927
AvaI	CYCGRG	2 cut(s)	292, 2106
AvaII	GGWCC	5 cut(s)	167, 200, 1235, 1295, 2273
AxyI	CCTNAGG	2 cut(s)	1239, 3225
BaeGI	GKGCMC	1 cut(s)	1939
BalI	TGGCCA	1 cut(s)	85
BamHI	GGATCC	1 cut(s)	1054
BanII	GRGCYC	1 cut(s)	1540
BbsI	GAAGAC	2 cut(s)	304, 1047
Bbv12I	GWGCWC	2 cut(s)	1939, 3078
BbvI	GCAGC	7 cut(s)	866, 1260, 1387, 2087, 2125, 2795, 3022
BccI	CCATC	8 cut(s)	658, 917, 953, 1226, 1817, 2046, 2552, 3086
BceAI	ACGGC	1 cut(s)	3277
BcgI	CGANNNNNNTGC	4 cut(s)	1907, 1941, 3125, 3159
BciT130I	CCWGG	9 cut(s)	817, 1515, 1612, 1787, 2069, 2214, 2305, 2588, 2685
BciVI	GTATCC	3 cut(s)	1512, 1691, 1881
BcnI	CCSGG	2 cut(s)	2107, 2108
BcoDI	GTCTC	4 cut(s)	789, 2685, 2772, 3379
BfmI	CTRYAG	3 cut(s)	773, 1526, 1686
BfrI	CTTAAG	1 cut(s)	1849
BfuAI	ACCTGC	2 cut(s)	766, 3094
BfuI	GTATCC	3 cut(s)	1512, 1691, 1881
BglII	AGATCT	2 cut(s)	465, 1654
BlpI	GCTNAGC	3 cut(s)	5, 510, 2491
BmcAI	AGTACT	1 cut(s)	1318
Bme18I	GGWCC	5 cut(s)	167, 200, 1235, 1295, 2273
BmeRI	GACNNNNNGTC	3 cut(s)	2539, 2764, 3215
BmeT110I	CYCGRG	2 cut(s)	292, 2106
BmgT120I	GGNCC	5 cut(s)	167, 200, 1235, 1295, 2273
BmiI	GGNNCC	5 cut(s)	201, 1056, 1512, 1773, 2978
BmrI	ACTGGG	2 cut(s)	133, 279
BmuI	ACTGGG	2 cut(s)	133, 279
BpiI	GAAGAC	2 cut(s)	304, 1047
BplI	GAGNNNNNCTC	4 cut(s)	2049, 2081, 2227, 2259
BpmI	CTGGAG	3 cut(s)	1769, 1979, 2051
Bpu10I	CCTNAGC	2 cut(s)	1728, 3318
Bpu1102I	GCTNAGC	3 cut(s)	5, 510, 2491
Bpu14I	TTCGAA	1 cut(s)	1927
BpuEI	CTTGAG	3 cut(s)	2336, 3322, 3336
BpuMI	CCSGG	2 cut(s)	2107, 2108
BsaAI	YACGTR	1 cut(s)	2748
BsaI	GGTCTC	2 cut(s)	789, 2685
BsaJI	CCNNGG	8 cut(s)	252, 291, 816, 1505, 1940, 2088, 2106, 2684
BsaXI	ACNNNNNCTCC	6 cut(s)	1484, 1514, 1584, 1614, 1767, 1797
Bse1I	ACTGG	7 cut(s)	128, 285, 676, 740, 2204, 2619, 3318
Bse21I	CCTNAGG	2 cut(s)	1239, 3225
Bse3DI	GCAATG	4 cut(s)	1384, 1503, 2304, 3018
BseBI	CCWGG	9 cut(s)	817, 1515, 1612, 1787, 2069, 2214, 2305, 2588, 2685
BseDI	CCNNGG	8 cut(s)	252, 291, 816, 1505, 1940, 2088, 2106, 2684
BseGI	GGATG	5 cut(s)	139, 1237, 1468, 2014, 3373
BseMI	GCAATG	4 cut(s)	1384, 1503, 2304, 3018
BseNI	ACTGG	7 cut(s)	128, 285, 676, 740, 2204, 2619, 3318
BseRI	GAGGAG	1 cut(s)	80
BseSI	GKGCMC	1 cut(s)	1939
BseXI	GCAGC	7 cut(s)	866, 1260, 1387, 2087, 2125, 2795, 3022
BseYI	CCCAGC	1 cut(s)	2865
BsgI	GTGCAG	3 cut(s)	125, 873, 2132
Bsh1236I	CGCG	3 cut(s)	24, 627, 1703
BshFI	GGCC	5 cut(s)	16, 85, 1571, 2303, 3223
BsiHKAI	GWGCWC	2 cut(s)	1939, 3078
BsiHKCI	CYCGRG	2 cut(s)	292, 2106
BsiSI	CCGG	1 cut(s)	2107
BsiWI	CGTACG	1 cut(s)	1346
BslFI	GGGAC	2 cut(s)	266, 3133
BsmAI	GTCTC	4 cut(s)	789, 2685, 2772, 3379
BsmFI	GGGAC	2 cut(s)	266, 3133
BsmI	GAATGC	2 cut(s)	1034, 3062
BsnI	GGCC	5 cut(s)	16, 85, 1571, 2303, 3223
Bso31I	GGTCTC	2 cut(s)	789, 2685
BsoBI	CYCGRG	2 cut(s)	292, 2106
Bsp119I	TTCGAA	1 cut(s)	1927
Bsp1286I	GDGCHC	3 cut(s)	1540, 1939, 3078
Bsp143I	GATC	9 cut(s)	343, 465, 1054, 1587, 1654, 2659, 2752, 3107, 3180
Bsp1720I	GCTNAGC	3 cut(s)	5, 510, 2491
Bsp19I	CCATGG	1 cut(s)	2088
BspANI	GGCC	5 cut(s)	16, 85, 1571, 2303, 3223
BspFNI	CGCG	3 cut(s)	24, 627, 1703
BspHI	TCATGA	2 cut(s)	919, 2755
BspLI	GGNNCC	5 cut(s)	201, 1056, 1512, 1773, 2978
BspMAI	CTGCAG	1 cut(s)	777
BspMI	ACCTGC	2 cut(s)	766, 3094
BspPI	GGATC	5 cut(s)	338, 1049, 1062, 2760, 3115
BspT104I	TTCGAA	1 cut(s)	1927
BspTI	CTTAAG	1 cut(s)	1849
BspTNI	GGTCTC	2 cut(s)	789, 2685
BsrDI	GCAATG	4 cut(s)	1384, 1503, 2304, 3018
BsrI	ACTGG	7 cut(s)	128, 285, 676, 740, 2204, 2619, 3318
BssECI	CCNNGG	8 cut(s)	252, 291, 816, 1505, 1940, 2088, 2106, 2684
BssMI	GATC	9 cut(s)	343, 465, 1054, 1587, 1654, 2659, 2752, 3107, 3180
BssNAI	GTATAC	1 cut(s)	39
BssT1I	CCWWGG	4 cut(s)	252, 1505, 1940, 2088
Bst1107I	GTATAC	1 cut(s)	39
Bst2UI	CCWGG	9 cut(s)	817, 1515, 1612, 1787, 2069, 2214, 2305, 2588, 2685
Bst4CI	ACNGT	9 cut(s)	319, 336, 1129, 1411, 1555, 1973, 2054, 2227, 3245
Bst6I	CTCTTC	3 cut(s)	547, 1421, 1929
BstAFI	CTTAAG	1 cut(s)	1849
BstAPI	GCANNNNNTGC	1 cut(s)	772
BstBAI	YACGTR	1 cut(s)	2748
BstBI	TTCGAA	1 cut(s)	1927
BstC8I	GCNNGC	9 cut(s)	11, 690, 1573, 1725, 2633, 2775, 2813, 3098, 3290
BstDSI	CCRYGG	1 cut(s)	2088
BstENI	CCTNNNNNAGG	1 cut(s)	1083
BstF5I	GGATG	5 cut(s)	139, 1237, 1468, 2014, 3373
BstFNI	CGCG	3 cut(s)	24, 627, 1703
BstHHI	GCGC	3 cut(s)	1737, 1848, 1887
BstKTI	GATC	9 cut(s)	346, 468, 1057, 1590, 1657, 2662, 2755, 3110, 3183
BstMAI	GTCTC	4 cut(s)	789, 2685, 2772, 3379
BstMBI	GATC	9 cut(s)	343, 465, 1054, 1587, 1654, 2659, 2752, 3107, 3180
BstMWI	GCNNNNNNNGC	8 cut(s)	10, 506, 772, 1372, 1568, 2084, 2783, 3285
BstNI	CCWGG	9 cut(s)	817, 1515, 1612, 1787, 2069, 2214, 2305, 2588, 2685
BstNSI	RCATGY	3 cut(s)	692, 1727, 3100
BstSFI	CTRYAG	3 cut(s)	773, 1526, 1686
BstSLI	GKGCMC	1 cut(s)	1939
BstUI	CGCG	3 cut(s)	24, 627, 1703
BstV1I	GCAGC	7 cut(s)	866, 1260, 1387, 2087, 2125, 2795, 3022
BstV2I	GAAGAC	2 cut(s)	304, 1047
BstX2I	RGATCY	4 cut(s)	465, 1054, 1654, 3107
BstYI	RGATCY	4 cut(s)	465, 1054, 1654, 3107
BstZ17I	GTATAC	1 cut(s)	39
Bsu36I	CCTNAGG	2 cut(s)	1239, 3225
BsuI	GTATCC	3 cut(s)	1512, 1691, 1881
BsuRI	GGCC	5 cut(s)	16, 85, 1571, 2303, 3223
BtgI	CCRYGG	1 cut(s)	2088
BtgZI	GCGATG	1 cut(s)	3150
BtsCI	GGATG	5 cut(s)	139, 1237, 1468, 2014, 3373
BtsI	GCAGTG	2 cut(s)	86, 113
BtsIMutI	CAGTG	6 cut(s)	86, 113, 207, 477, 1125, 3311
BveI	ACCTGC	2 cut(s)	766, 3094
Cac8I	GCNNGC	9 cut(s)	11, 690, 1573, 1725, 2633, 2775, 2813, 3098, 3290
CaiI	CAGNNNCTG	1 cut(s)	860
CciI	TCATGA	2 cut(s)	919, 2755
CfoI	GCGC	3 cut(s)	1737, 1848, 1887
Cfr13I	GGNCC	5 cut(s)	167, 200, 1235, 1295, 2273
Cfr9I	CCCGGG	1 cut(s)	2106
CseI	GACGC	2 cut(s)	2342, 3135
CsiI	ACCWGGT	1 cut(s)	1513
DpnI	GATC	9 cut(s)	345, 467, 1056, 1589, 1656, 2661, 2754, 3109, 3182
DpnII	GATC	9 cut(s)	343, 465, 1054, 1587, 1654, 2659, 2752, 3107, 3180
DraI	TTTAAA	1 cut(s)	2505
DriI	GACNNNNNGTC	3 cut(s)	2539, 2764, 3215
EaeI	YGGCCR	1 cut(s)	83
Eam1104I	CTCTTC	3 cut(s)	547, 1421, 1929
Eam1105I	GACNNNNNGTC	3 cut(s)	2539, 2764, 3215
EarI	CTCTTC	3 cut(s)	547, 1421, 1929
EciI	GGCGGA	1 cut(s)	2382
Eco130I	CCWWGG	4 cut(s)	252, 1505, 1940, 2088
Eco147I	AGGCCT	1 cut(s)	3223
Eco24I	GRGCYC	1 cut(s)	1540
Eco31I	GGTCTC	2 cut(s)	789, 2685
Eco32I	GATATC	1 cut(s)	2264
Eco47I	GGWCC	5 cut(s)	167, 200, 1235, 1295, 2273
Eco57I	CTGAAG	8 cut(s)	113, 702, 1034, 1059, 1988, 2478, 2865, 3219
Eco81I	CCTNAGG	2 cut(s)	1239, 3225
Eco88I	CYCGRG	2 cut(s)	292, 2106
EcoNI	CCTNNNNNAGG	1 cut(s)	1083
EcoO109I	RGGNCCY	1 cut(s)	200
EcoRI	GAATTC	1 cut(s)	1261
EcoRII	CCWGG	9 cut(s)	815, 1513, 1610, 1785, 2067, 2212, 2303, 2586, 2683
EcoRV	GATATC	1 cut(s)	2264
EcoT14I	CCWWGG	4 cut(s)	252, 1505, 1940, 2088
EcoT22I	ATGCAT	1 cut(s)	231
EcoT38I	GRGCYC	1 cut(s)	1540
ErhI	CCWWGG	4 cut(s)	252, 1505, 1940, 2088
FalI	AAGNNNNNCTT	8 cut(s)	1032, 1064, 1820, 1852, 1924, 1956, 3352, 3384
FaqI	GGGAC	2 cut(s)	266, 3133
FauI	CCCGC	3 cut(s)	493, 698, 1449
FblI	GTMKAC	2 cut(s)	38, 1480
FokI	GGATG	5 cut(s)	146, 1244, 1475, 2001, 3360
FriOI	GRGCYC	1 cut(s)	1540
GlaI	GCGC	3 cut(s)	1736, 1847, 1886
GsaI	CCCAGC	1 cut(s)	2869
GsuI	CTGGAG	3 cut(s)	1769, 1979, 2051
HaeIII	GGCC	5 cut(s)	16, 85, 1571, 2303, 3223
HapII	CCGG	1 cut(s)	2107
HgaI	GACGC	2 cut(s)	2342, 3135
HhaI	GCGC	3 cut(s)	1737, 1848, 1887
Hin6I	GCGC	3 cut(s)	1735, 1846, 1885
HinP1I	GCGC	3 cut(s)	1735, 1846, 1885
HincII	GTYRAC	3 cut(s)	1132, 2198, 2223
HindII	GTYRAC	3 cut(s)	1132, 2198, 2223
HindIII	AAGCTT	2 cut(s)	1332, 2488
HpaII	CCGG	1 cut(s)	2107
HphI	GGTGA	3 cut(s)	139, 2095, 2393
Hpy166II	GTNNAC	7 cut(s)	39, 745, 1132, 1481, 1937, 2198, 2223
Hpy8I	GTNNAC	7 cut(s)	39, 745, 1132, 1481, 1937, 2198, 2223
Hpy99I	CGWCG	1 cut(s)	1867
HpyCH4III	ACNGT	9 cut(s)	319, 336, 1129, 1411, 1555, 1973, 2054, 2227, 3245
HpyCH4IV	ACGT	2 cut(s)	2470, 2747
HpyF10VI	GCNNNNNNNGC	8 cut(s)	10, 506, 772, 1372, 1568, 2084, 2783, 3285
HpySE526I	ACGT	2 cut(s)	2470, 2747
HspAI	GCGC	3 cut(s)	1735, 1846, 1885
Kzo9I	GATC	9 cut(s)	343, 465, 1054, 1587, 1654, 2659, 2752, 3107, 3180
LmnI	GCTCC	7 cut(s)	76, 652, 898, 1218, 1681, 3284, 3341
Lsp1109I	GCAGC	7 cut(s)	866, 1260, 1387, 2087, 2125, 2795, 3022
MabI	ACCWGGT	1 cut(s)	1513
MaeII	ACGT	2 cut(s)	2470, 2747
MaeIII	GTNAC	5 cut(s)	149, 949, 1162, 1549, 2101
MalI	GATC	9 cut(s)	345, 467, 1056, 1589, 1656, 2661, 2754, 3109, 3182
MboI	GATC	9 cut(s)	343, 465, 1054, 1587, 1654, 2659, 2752, 3107, 3180
MfeI	CAATTG	1 cut(s)	2402
MflI	RGATCY	4 cut(s)	465, 1054, 1654, 3107
MhlI	GDGCHC	3 cut(s)	1540, 1939, 3078
MlsI	TGGCCA	1 cut(s)	85
MluNI	TGGCCA	1 cut(s)	85
MlyI	GAGTC	4 cut(s)	815, 1037, 1429, 2129
MmeI	TCCRAC	4 cut(s)	145, 1403, 1788, 2251
Mox20I	TGGCCA	1 cut(s)	85
Mph1103I	ATGCAT	1 cut(s)	231
MroXI	GAANNNNTTC	2 cut(s)	1436, 2388
MscI	TGGCCA	1 cut(s)	85
MslI	CAYNNNNRTG	3 cut(s)	924, 1119, 2108
Msp20I	TGGCCA	1 cut(s)	85
MspCI	CTTAAG	1 cut(s)	1849
MspI	CCGG	1 cut(s)	2107
MssI	GTTTAAAC	1 cut(s)	2505
MunI	CAATTG	1 cut(s)	2402
Mva1269I	GAATGC	2 cut(s)	1034, 3062
MvaI	CCWGG	9 cut(s)	817, 1515, 1612, 1787, 2069, 2214, 2305, 2588, 2685
MvnI	CGCG	3 cut(s)	24, 627, 1703
MwoI	GCNNNNNNNGC	8 cut(s)	10, 506, 772, 1372, 1568, 2084, 2783, 3285
NciI	CCSGG	2 cut(s)	2107, 2108
NcoI	CCATGG	1 cut(s)	2088
NdeII	GATC	9 cut(s)	343, 465, 1054, 1587, 1654, 2659, 2752, 3107, 3180
NlaIV	GGNNCC	5 cut(s)	201, 1056, 1512, 1773, 2978
NmuCI	GTSAC	4 cut(s)	149, 949, 1549, 2101
NsiI	ATGCAT	1 cut(s)	231
NspI	RCATGY	3 cut(s)	692, 1727, 3100
NspV	TTCGAA	1 cut(s)	1927
OliI	CACNNNNGTG	1 cut(s)	2108
PaeI	GCATGC	3 cut(s)	692, 1727, 3100
PagI	TCATGA	2 cut(s)	919, 2755
PaqCI	CACCTGC	1 cut(s)	766
PceI	AGGCCT	1 cut(s)	3223
PctI	GAATGC	2 cut(s)	1034, 3062
PdmI	GAANNNNTTC	2 cut(s)	1436, 2388
Pfl23II	CGTACG	1 cut(s)	1346
PflMI	CCANNNNNTGG	4 cut(s)	521, 1223, 1792, 2885
PfoI	TCCNGGA	1 cut(s)	1785
PleI	GAGTC	4 cut(s)	814, 1037, 1428, 2128
PmeI	GTTTAAAC	1 cut(s)	2505
PpsI	GAGTC	4 cut(s)	814, 1037, 1428, 2128
Ppu21I	YACGTR	1 cut(s)	2748
PpuMI	RGGWCCY	1 cut(s)	200
Psp1406I	AACGTT	1 cut(s)	2470
Psp5II	RGGWCCY	1 cut(s)	200
Psp6I	CCWGG	9 cut(s)	815, 1513, 1610, 1785, 2067, 2212, 2303, 2586, 2683
PspFI	CCCAGC	1 cut(s)	2865
PspGI	CCWGG	9 cut(s)	815, 1513, 1610, 1785, 2067, 2212, 2303, 2586, 2683
PspLI	CGTACG	1 cut(s)	1346
PspN4I	GGNNCC	5 cut(s)	201, 1056, 1512, 1773, 2978
PspPI	GGNCC	5 cut(s)	167, 200, 1235, 1295, 2273
PspPPI	RGGWCCY	1 cut(s)	200
PstI	CTGCAG	1 cut(s)	777
PstNI	CAGNNNCTG	1 cut(s)	860
PsuI	RGATCY	4 cut(s)	465, 1054, 1654, 3107
RseI	CAYNNNNRTG	3 cut(s)	924, 1119, 2108
Sau3AI	GATC	9 cut(s)	343, 465, 1054, 1587, 1654, 2659, 2752, 3107, 3180
Sau96I	GGNCC	5 cut(s)	167, 200, 1235, 1295, 2273
ScaI	AGTACT	1 cut(s)	1318
SchI	GAGTC	4 cut(s)	815, 1037, 1429, 2129
SduI	GDGCHC	3 cut(s)	1540, 1939, 3078
SexAI	ACCWGGT	1 cut(s)	1513
SfcI	CTRYAG	3 cut(s)	773, 1526, 1686
SfuI	TTCGAA	1 cut(s)	1927
SinI	GGWCC	5 cut(s)	167, 200, 1235, 1295, 2273
SmaI	CCCGGG	1 cut(s)	2108
SmiMI	CAYNNNNRTG	3 cut(s)	924, 1119, 2108
SmlI	CTYRAG	4 cut(s)	1849, 2315, 3301, 3351
SmoI	CTYRAG	4 cut(s)	1849, 2315, 3301, 3351
SphI	GCATGC	3 cut(s)	692, 1727, 3100
SseBI	AGGCCT	1 cut(s)	3223
SspI	AATATT	2 cut(s)	2371, 3381
StuI	AGGCCT	1 cut(s)	3223
StyI	CCWWGG	4 cut(s)	252, 1505, 1940, 2088
TaaI	ACNGT	9 cut(s)	319, 336, 1129, 1411, 1555, 1973, 2054, 2227, 3245
TaiI	ACGT	2 cut(s)	2473, 2750
TaqI	TCGA	6 cut(s)	982, 999, 1107, 1338, 1840, 1927
TatI	WGTACW	3 cut(s)	331, 742, 1316
TauI	GCSGC	3 cut(s)	16, 24, 1706
TscAI	CASTG	6 cut(s)	86, 113, 214, 477, 1132, 3318
TseFI	GTSAC	4 cut(s)	149, 949, 1549, 2101
TseI	GCWGC	7 cut(s)	854, 1248, 1375, 2075, 2113, 2783, 3010
Tsp45I	GTSAC	4 cut(s)	149, 949, 1549, 2101
TspGWI	ACGGA	4 cut(s)	24, 1334, 1981, 2989
TspMI	CCCGGG	1 cut(s)	2106
TspRI	CASTG	6 cut(s)	86, 113, 214, 477, 1132, 3318
Van91I	CCANNNNNTGG	4 cut(s)	521, 1223, 1792, 2885
Vha464I	CTTAAG	1 cut(s)	1849
VneI	GTGCAC	1 cut(s)	1935
VpaK11BI	GGWCC	5 cut(s)	167, 200, 1235, 1295, 2273
XagI	CCTNNNNNAGG	1 cut(s)	1083
XapI	RAATTY	6 cut(s)	70, 1261, 1432, 1743, 2790, 3265
XbaI	TCTAGA	2 cut(s)	3206, 3332
XceI	RCATGY	3 cut(s)	692, 1727, 3100
XcmI	CCANNNNNNNNNTGG	1 cut(s)	393
XmaI	CCCGGG	1 cut(s)	2106
XmiI	GTMKAC	2 cut(s)	38, 1480
XmnI	GAANNNNTTC	2 cut(s)	1436, 2388
ZrmI	AGTACT	1 cut(s)	1318
Zsp2I	ATGCAT	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.