Rmu_ssc0000042.1_g000009

Belongs to the DOCK family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000042.1
Physical Location & Seq
Forward (+)
43113 .. 45362
2250 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000042.1_g000009.1.cds

Sequence Viewer

Length: 471 bp
atggtggttcaccgttcactccccatcgcctctctctttttccggcgacctctcgaatcgtgcatagctcgacctccatggccgtcagaagcgtcgatttcaagtgaattgcacattatcggtgcaaggcgaaccaatgcagacgataccactgatgatgatttaccaagtacctcggagtgccaatttacagatgcagtagcctctgattcagcacactccaatgatccaaagcattttggtcaatctcctctccctgcttatcaaccagcttttgattgggaaagggttccagaaactccaatatctcagtatggcaattgtataatcttttcttcatgtaggagttcttataagcctgattgcttgtcccttgtgcttattaattgttattttctctacttctctcagtggcctgaagatctcagtgaaagttctgtccctatcatttcaagcgggactggttggtga

Protein Analysis

156

Amino Acids

17.38

Weight (kDa)

4.67

Isoelectric Point (pI)

68.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 354
AciI CCGC 1 cut(s) 456
AclWI GGATC 1 cut(s) 221
AcoI YGGCCR 1 cut(s) 80
AcuI CTGAAG 1 cut(s) 438
AfaI GTAC 1 cut(s) 172
AgsI TTSAA 2 cut(s) 102, 453
AluBI AGCT 2 cut(s) 68, 272
AluI AGCT 2 cut(s) 68, 272
AlwI GGATC 1 cut(s) 221
AoxI GGCC 2 cut(s) 80, 413
AseI ATTAAT 1 cut(s) 384
Asp700I GAANNNNTTC 1 cut(s) 288
BccI CCATC 1 cut(s) 32
BceAI ACGGC 1 cut(s) 67
BglII AGATCT 1 cut(s) 421
BmiI GGNNCC 1 cut(s) 291
BmsI GCATC 1 cut(s) 184
BsaJI CCNNGG 2 cut(s) 77, 174
Bse1I ACTGG 1 cut(s) 466
BseDI CCNNGG 2 cut(s) 77, 174
BseMII CTCAG 3 cut(s) 323, 422, 439
BseNI ACTGG 1 cut(s) 466
BseRI GAGGAG 1 cut(s) 240
BshFI GGCC 2 cut(s) 82, 415
BsiSI CCGG 1 cut(s) 43
BslFI GGGAC 2 cut(s) 355, 425
BsmFI GGGAC 2 cut(s) 355, 425
BsnI GGCC 2 cut(s) 82, 415
Bsp143I GATC 2 cut(s) 226, 421
Bsp19I CCATGG 1 cut(s) 77
BspACI CCGC 1 cut(s) 456
BspANI GGCC 2 cut(s) 82, 415
BspCNI CTCAG 3 cut(s) 322, 421, 438
BspLI GGNNCC 1 cut(s) 291
BspPI GGATC 1 cut(s) 221
BsrI ACTGG 1 cut(s) 466
BssECI CCNNGG 2 cut(s) 77, 174
BssMI GATC 2 cut(s) 226, 421
BssT1I CCWWGG 1 cut(s) 77
Bst4CI ACNGT 1 cut(s) 14
BstDEI CTNAG 3 cut(s) 309, 408, 425
BstDSI CCRYGG 1 cut(s) 77
BstKTI GATC 2 cut(s) 229, 424
BstMBI GATC 2 cut(s) 226, 421
BstX2I RGATCY 1 cut(s) 421
BstYI RGATCY 1 cut(s) 421
BsuRI GGCC 2 cut(s) 82, 415
BtgI CCRYGG 1 cut(s) 77
BtgZI GCGATG 1 cut(s) 10
BtsIMutI CAGTG 3 cut(s) 150, 416, 433
CseI GACGC 1 cut(s) 81
Csp6I GTAC 1 cut(s) 171
CviAII CATG 2 cut(s) 78, 339
CviJI RGCY 6 cut(s) 68, 82, 203, 272, 358, 415
CviKI_1 RGCY 6 cut(s) 68, 82, 203, 272, 358, 415
CviQI GTAC 1 cut(s) 171
DdeI CTNAG 3 cut(s) 309, 408, 425
DpnI GATC 2 cut(s) 228, 423
DpnII GATC 2 cut(s) 226, 421
EaeI YGGCCR 1 cut(s) 80
Eco130I CCWWGG 1 cut(s) 77
Eco57I CTGAAG 1 cut(s) 438
EcoT14I CCWWGG 1 cut(s) 77
ErhI CCWWGG 1 cut(s) 77
FaeI CATG 2 cut(s) 81, 342
FaiI YATR 6 cut(s) 65, 79, 315, 326, 340, 354
FaqI GGGAC 2 cut(s) 355, 425
FatI CATG 2 cut(s) 77, 338
FauI CCCGC 1 cut(s) 449
HaeIII GGCC 2 cut(s) 82, 415
HapII CCGG 1 cut(s) 43
HgaI GACGC 1 cut(s) 81
Hin1II CATG 2 cut(s) 81, 342
HinfI GANTC 2 cut(s) 56, 209
HpaII CCGG 1 cut(s) 43
Hpy166II GTNNAC 2 cut(s) 10, 17
Hpy188I TCNGA 3 cut(s) 88, 178, 208
Hpy188III TCNNGA 2 cut(s) 53, 293
Hpy8I GTNNAC 2 cut(s) 10, 17
Hpy99I CGWCG 1 cut(s) 97
HpyCH4III ACNGT 1 cut(s) 14
HpyCH4V TGCA 5 cut(s) 63, 112, 125, 140, 197
HpyF3I CTNAG 3 cut(s) 309, 408, 425
Hsp92II CATG 2 cut(s) 81, 342
Kzo9I GATC 2 cut(s) 226, 421
LpnPI CCDG 7 cut(s) 56, 270, 282, 306, 372, 429, 447
LweI GCATC 1 cut(s) 184
MalI GATC 2 cut(s) 228, 423
MboI GATC 2 cut(s) 226, 421
MboII GAAGA 2 cut(s) 327, 431
MfeI CAATTG 1 cut(s) 319
MflI RGATCY 1 cut(s) 421
MluCI AATT 4 cut(s) 107, 185, 319, 385
MnlI CCTC 6 cut(s) 40, 60, 84, 184, 214, 261
MroXI GAANNNNTTC 1 cut(s) 288
MseI TTAA 1 cut(s) 384
MslI CAYNNNNRTG 1 cut(s) 222
MspI CCGG 1 cut(s) 43
MunI CAATTG 1 cut(s) 319
NcoI CCATGG 1 cut(s) 77
NdeII GATC 2 cut(s) 226, 421
NlaIII CATG 2 cut(s) 81, 342
NlaIV GGNNCC 1 cut(s) 291
PdmI GAANNNNTTC 1 cut(s) 288
PfeI GAWTC 2 cut(s) 56, 209
PshBI ATTAAT 1 cut(s) 384
PsiI TTATAA 1 cut(s) 354
PspN4I GGNNCC 1 cut(s) 291
PsuI RGATCY 1 cut(s) 421
RsaI GTAC 1 cut(s) 172
RsaNI GTAC 1 cut(s) 171
RseI CAYNNNNRTG 1 cut(s) 222
SaqAI TTAA 1 cut(s) 384
Sau3AI GATC 2 cut(s) 226, 421
SetI ASST 5 cut(s) 52, 70, 76, 176, 274
SfaNI GCATC 1 cut(s) 184
SmiMI CAYNNNNRTG 1 cut(s) 222
Sse9I AATT 4 cut(s) 107, 185, 319, 385
SsiI CCGC 1 cut(s) 456
StyI CCWWGG 1 cut(s) 77
TaaI ACNGT 1 cut(s) 14
TaqI TCGA 3 cut(s) 54, 70, 95
TasI AATT 4 cut(s) 107, 185, 319, 385
TfiI GAWTC 2 cut(s) 56, 209
Tru1I TTAA 1 cut(s) 384
Tru9I TTAA 1 cut(s) 384
TscAI CASTG 3 cut(s) 157, 416, 433
TspDTI ATGAA 1 cut(s) 327
TspRI CASTG 3 cut(s) 157, 416, 433
VspI ATTAAT 1 cut(s) 384
XcmI CCANNNNNNNNNTGG 1 cut(s) 276
XmnI GAANNNNTTC 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.