Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001516

Physical Location & Seq

Genomic Coordinates Reverse (-)

8719474 .. 8720584

Gene Structure 1111 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G108400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGTCAGCAATGAGATCTGCTCTGAGACTTCTGCAGCTGAGGTAGAAGGATATGTACTACAACTCACAAATAAGCTATTTTCTCAAGGCGAGCTGTTTCATTTTTGTGCAAGCATTCTGGAACTTGTTATCCCAGTTTACAAAAGCAGGAGGGCATATGGACAGCTGAACAGGGTTGGGTTTTACGGTGGCAGATTTGGAAAGTTAGATGGAAAGGAATGTGCATATAGGGAGGCCTGTGATGTACGGCTAGGTGACATAGTGGAGAAACTTAGTCATATATATGAGTGTGGGATGGATGGCAATCACACCTTGCACATTATTCCAGATTCTAGGCAGGTAAAGGCAGATGAATTGCAGTCTAGTGTCTGCTACCTTCAGATAACTGCTGTTGATTCAGTCATGGAAGATGAAGATTTGGGAAGCAGAAGGGAGAGAATCTTTTCTCTTTCCACTGGTAGTGTTTGTGCACGAGTCTTTGAGCGTTTCTTTTTTGATACCCCATTTACGAAAAATGGAAAGACTCAAGGTGGATTGGAAGACCAGTGGAATCTTCAGAAAATGCCATTGGGAATGATTAATAGTCGGACAGCTGCTTTACGAAATGAACTTGAAGAGCCTCGCAGTTCTGAAGGGGATCAACTCTCACGTTTCCAGACCCTACAGGGAATTCTTCAAGTCAGTGTTGCAGTTCAGGTTAACAACGGGGTACCGAGTGTGTGCACTGCTTTCCTGTCTGGTGAGCCTGCAACAAGGTTGCGGTCGCAGGAACTGCAGCAACTCATTGGCGCGCTCCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0006810 GO:0008064 GO:0008150 GO:0008360 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009958 GO:0009966 GO:0009987 GO:0010646 GO:0010928 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0017016 GO:0017048 GO:0019898 GO:0019899 GO:0022603 GO:0022604 GO:0023051 GO:0030832 GO:0031267 GO:0032535 GO:0032956 GO:0032970 GO:0033043 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051020 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0065007 GO:0065008 GO:0065009 GO:0070971 GO:0071840 GO:0071944 GO:0090066 GO:0098772 GO:0110053 GO:1902903

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DHR-2 DOCK-C2

Protein Analysis

267

Amino Acids

29.63

Weight (kDa)

5.26

Isoelectric Point (pI)

56.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16340 AT4G16340
fragaria_vesca	FvH4_3g14770 FvH4_3g14770 FvH4_3g14770
malus_domestica	MD05G1229900.v1.1 MD05G1233200.v1.1 MD10G1209700.v1.1
prunus_persica	Prupe.3G108400_v2.0.a1 Prupe.4G132800_v2.0.a1
pyrus_communis	pycom05g21080 pycom05g21090 pycom10g17800 pycom10g17820
rosa_chinensis	RchiOBHm_Chr1g0327621 RchiOBHm_Chr3g0473981 RchiOBHm_Chr5g0024291 RchiOBHm_Chr5g0024301 RchiOBHm_Chr5g0024371 RchiOBHm_Chr5g0024381
rosa_laevigata	RLG00000029979 RLG00000032795 RLG00000036969
rosa_multiflora	Rmu_co8048528.1_g000001 Rmu_co8378897.1_g000002 Rmu_sc0005861.1_g000003 Rmu_sc0015218.1_g000005 Rmu_ssc0000042.1_g000009
rosa_roxburghii	Rroxscaffold_1G00054850 Rroxscaffold_1G00054890 Rroxscaffold_1G00055790 Rroxscaffold_1G00055850 Rroxscaffold_4G00322510
rosa_rugosa	Rorug01G0068800 Rorug05G0083000 Rorug05G0083100
rosa_samantha	Rh3AG187600 Rh3BG216300 Rh3CG212800 Rh5AG173700 Rh5BG170500 Rh5BG170900 Rh5BG171900 Rh5BG172000 Rh5CG186800 Rh5CG187500 Rh5CG187600 Rh5DG173100
rosa_wichuraiana	Rw0G000890 Rw3G017190 Rw5G015680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	328
Acc65I	GGTACC	1 cut(s)	709
AccB1I	GGYRCC	1 cut(s)	709
AccII	CGCG	1 cut(s)	791
AciI	CCGC	1 cut(s)	760
AclWI	GGATC	1 cut(s)	645
AcsI	RAATTY	1 cut(s)	669
AcuI	CTGAAG	3 cut(s)	362, 539, 651
AfaI	GTAC	3 cut(s)	57, 246, 711
AgsI	TTSAA	2 cut(s)	614, 677
AjuI	GAANNNNNNNTTGG	2 cut(s)	551, 583
AloI	GAACNNNNNNTCC	2 cut(s)	114, 146
AluBI	AGCT	5 cut(s)	38, 76, 94, 166, 593
AluI	AGCT	5 cut(s)	38, 76, 94, 166, 593
Alw21I	GWGCWC	2 cut(s)	472, 725
Alw26I	GTCTC	1 cut(s)	20
Alw44I	GTGCAC	2 cut(s)	468, 721
AlwI	GGATC	1 cut(s)	645
AlwNI	CAGNNNCTG	1 cut(s)	772
AoxI	GGCC	1 cut(s)	234
ApaLI	GTGCAC	2 cut(s)	468, 721
ApeKI	GCWGC	3 cut(s)	35, 593, 775
ApoI	RAATTY	1 cut(s)	669
AseI	ATTAAT	1 cut(s)	579
Asp700I	GAANNNNTTC	1 cut(s)	442
Asp718I	GGTACC	1 cut(s)	709
AspLEI	GCGC	2 cut(s)	791, 793
AsuHPI	GGTGA	2 cut(s)	266, 752
BaeGI	GKGCMC	2 cut(s)	472, 725
BanI	GGYRCC	1 cut(s)	709
BarI	GAAGNNNNNNTAC	2 cut(s)	39, 71
BauI	CACGAG	1 cut(s)	471
BbsI	GAAGAC	1 cut(s)	546
Bbv12I	GWGCWC	2 cut(s)	472, 725
BbvCI	CCTCAGC	1 cut(s)	39
BbvI	GCAGC	3 cut(s)	47, 580, 787
BccI	CCATC	3 cut(s)	203, 289, 293
BceAI	ACGGC	1 cut(s)	263
BcoDI	GTCTC	1 cut(s)	20
BfaI	CTAG	3 cut(s)	251, 333, 363
BfmI	CTRYAG	3 cut(s)	33, 662, 773
BfuAI	ACCTGC	1 cut(s)	328
BglII	AGATCT	1 cut(s)	15
BisI	GCNGC	3 cut(s)	36, 594, 776
BlsI	GCNGC	3 cut(s)	37, 595, 777
BmiI	GGNNCC	1 cut(s)	711
BmrI	ACTGGG	1 cut(s)	128
BmuI	ACTGGG	1 cut(s)	128
BpiI	GAAGAC	1 cut(s)	546
BplI	GAGNNNNNCTC	1 cut(s)	37
Bpu10I	CCTNAGC	1 cut(s)	39
BpuEI	CTTGAG	2 cut(s)	69, 510
BsaBI	GATNNNNATC	1 cut(s)	303
Bse1I	ACTGG	3 cut(s)	134, 460, 544
Bse3DI	GCAATG	1 cut(s)	16
Bse8I	GATNNNNATC	1 cut(s)	303
BseGI	GGATG	2 cut(s)	300, 304
BseJI	GATNNNNATC	1 cut(s)	303
BseMI	GCAATG	1 cut(s)	16
BseMII	CTCAG	2 cut(s)	15, 30
BseNI	ACTGG	3 cut(s)	134, 460, 544
BsePI	GCGCGC	1 cut(s)	789
BseSI	GKGCMC	2 cut(s)	472, 725
BseXI	GCAGC	3 cut(s)	47, 580, 787
Bsh1236I	CGCG	1 cut(s)	791
Bsh1285I	CGRYCG	1 cut(s)	764
BshFI	GGCC	1 cut(s)	236
BshNI	GGYRCC	1 cut(s)	709
BsiEI	CGRYCG	1 cut(s)	764
BsiHKAI	GWGCWC	2 cut(s)	472, 725
BsmAI	GTCTC	1 cut(s)	20
BsmI	GAATGC	1 cut(s)	114
BsnI	GGCC	1 cut(s)	236
Bsp1286I	GDGCHC	2 cut(s)	472, 725
Bsp143I	GATC	2 cut(s)	15, 637
BspACI	CCGC	1 cut(s)	760
BspANI	GGCC	1 cut(s)	236
BspCNI	CTCAG	2 cut(s)	16, 31
BspFNI	CGCG	1 cut(s)	791
BspLI	GGNNCC	1 cut(s)	711
BspMAI	CTGCAG	2 cut(s)	37, 777
BspMI	ACCTGC	1 cut(s)	328
BspPI	GGATC	1 cut(s)	645
BspQI	GCTCTTC	1 cut(s)	609
BspT107I	GGYRCC	1 cut(s)	709
BsrDI	GCAATG	1 cut(s)	16
BsrI	ACTGG	3 cut(s)	134, 460, 544
BssHII	GCGCGC	1 cut(s)	789
BssMI	GATC	2 cut(s)	15, 637
BssSI	CACGAG	1 cut(s)	471
Bst2BI	CACGAG	1 cut(s)	471
Bst4CI	ACNGT	1 cut(s)	188
Bst6I	CTCTTC	1 cut(s)	609
BstAPI	GCANNNNNTGC	1 cut(s)	772
BstC8I	GCNNGC	4 cut(s)	92, 112, 747, 791
BstDEI	CTNAG	3 cut(s)	24, 39, 272
BstF5I	GGATG	2 cut(s)	300, 304
BstFNI	CGCG	1 cut(s)	791
BstHHI	GCGC	2 cut(s)	791, 793
BstKTI	GATC	2 cut(s)	18, 640
BstMAI	GTCTC	1 cut(s)	20
BstMBI	GATC	2 cut(s)	15, 637
BstMCI	CGRYCG	1 cut(s)	764
BstMWI	GCNNNNNNNGC	1 cut(s)	772
BstSFI	CTRYAG	3 cut(s)	33, 662, 773
BstSLI	GKGCMC	2 cut(s)	472, 725
BstUI	CGCG	1 cut(s)	791
BstV1I	GCAGC	3 cut(s)	47, 580, 787
BstV2I	GAAGAC	1 cut(s)	546
BstX2I	RGATCY	1 cut(s)	15
BstYI	RGATCY	1 cut(s)	15
BsuRI	GGCC	1 cut(s)	236
BtsCI	GGATG	2 cut(s)	300, 304
BtsI	GCAGTG	1 cut(s)	723
BtsIMutI	CAGTG	4 cut(s)	453, 551, 688, 723
BveI	ACCTGC	1 cut(s)	328
Cac8I	GCNNGC	4 cut(s)	92, 112, 747, 791
CaiI	CAGNNNCTG	1 cut(s)	772
CfoI	GCGC	2 cut(s)	791, 793
Csp6I	GTAC	3 cut(s)	56, 245, 710
CviAII	CATG	1 cut(s)	403
CviJI	RGCY	9 cut(s)	38, 76, 94, 166, 236, 250, 593, 619, 745
CviKI_1	RGCY	9 cut(s)	38, 76, 94, 166, 236, 250, 593, 619, 745
CviQI	GTAC	3 cut(s)	56, 245, 710
DdeI	CTNAG	3 cut(s)	24, 39, 272
DpnI	GATC	2 cut(s)	17, 639
DpnII	GATC	2 cut(s)	15, 637
Eam1104I	CTCTTC	1 cut(s)	609
EarI	CTCTTC	1 cut(s)	609
Eco147I	AGGCCT	1 cut(s)	236
Eco57I	CTGAAG	3 cut(s)	362, 539, 651
EcoRI	GAATTC	1 cut(s)	669
FaeI	CATG	1 cut(s)	406
FatI	CATG	1 cut(s)	402
FauNDI	CATATG	1 cut(s)	157
Fnu4HI	GCNGC	3 cut(s)	36, 594, 776
FokI	GGATG	2 cut(s)	307, 311
Fsp4HI	GCNGC	3 cut(s)	36, 594, 776
FspBI	CTAG	3 cut(s)	251, 333, 363
GlaI	GCGC	2 cut(s)	790, 792
GluI	GCNGC	3 cut(s)	36, 594, 776
HaeIII	GGCC	1 cut(s)	236
HhaI	GCGC	2 cut(s)	791, 793
Hin1II	CATG	1 cut(s)	406
Hin6I	GCGC	2 cut(s)	789, 791
HinP1I	GCGC	2 cut(s)	789, 791
HincII	GTYRAC	1 cut(s)	700
HindII	GTYRAC	1 cut(s)	700
HinfI	GANTC	6 cut(s)	329, 395, 438, 474, 523, 550
HpaI	GTTAAC	1 cut(s)	700
HphI	GGTGA	2 cut(s)	266, 752
Hpy166II	GTNNAC	4 cut(s)	139, 470, 700, 723
Hpy188I	TCNGA	5 cut(s)	25, 381, 558, 588, 631
Hpy188III	TCNNGA	3 cut(s)	119, 326, 655
Hpy8I	GTNNAC	4 cut(s)	139, 470, 700, 723
HpyAV	CCTTC	4 cut(s)	41, 386, 423, 626
HpyCH4III	ACNGT	1 cut(s)	188
HpyCH4IV	ACGT	1 cut(s)	649
HpyF10VI	GCNNNNNNNGC	1 cut(s)	772
HpyF3I	CTNAG	3 cut(s)	24, 39, 272
HpySE526I	ACGT	1 cut(s)	649
Hsp92II	CATG	1 cut(s)	406
HspAI	GCGC	2 cut(s)	789, 791
KpnI	GGTACC	1 cut(s)	713
KspAI	GTTAAC	1 cut(s)	700
Kzo9I	GATC	2 cut(s)	15, 637
LguI	GCTCTTC	1 cut(s)	609
LmnI	GCTCC	1 cut(s)	798
Lsp1109I	GCAGC	3 cut(s)	47, 580, 787
MaeI	CTAG	3 cut(s)	251, 333, 363
MaeII	ACGT	1 cut(s)	649
MaeIII	GTNAC	1 cut(s)	254
MalI	GATC	2 cut(s)	17, 639
MboI	GATC	2 cut(s)	15, 637
MboII	GAAGA	6 cut(s)	419, 425, 545, 551, 626, 665
MflI	RGATCY	1 cut(s)	15
MhlI	GDGCHC	2 cut(s)	472, 725
MluCI	AATT	2 cut(s)	353, 669
MlyI	GAGTC	2 cut(s)	483, 517
MmeI	TCCRAC	1 cut(s)	566
MnlI	CCTC	4 cut(s)	34, 144, 226, 630
MroXI	GAANNNNTTC	1 cut(s)	442
MseI	TTAA	3 cut(s)	579, 699, 799
MslI	CAYNNNNRTG	2 cut(s)	105, 282
MspA1I	CMGCKG	3 cut(s)	38, 166, 593
Mva1269I	GAATGC	1 cut(s)	114
MvnI	CGCG	1 cut(s)	791
MwoI	GCNNNNNNNGC	1 cut(s)	772
NdeI	CATATG	1 cut(s)	157
NdeII	GATC	2 cut(s)	15, 637
NlaIII	CATG	1 cut(s)	406
NlaIV	GGNNCC	1 cut(s)	711
NmuCI	GTSAC	1 cut(s)	254
PauI	GCGCGC	1 cut(s)	789
PceI	AGGCCT	1 cut(s)	236
PciSI	GCTCTTC	1 cut(s)	609
PctI	GAATGC	1 cut(s)	114
PdmI	GAANNNNTTC	1 cut(s)	442
PfeI	GAWTC	4 cut(s)	329, 395, 438, 550
PkrI	GCNGC	3 cut(s)	37, 595, 777
PleI	GAGTC	2 cut(s)	482, 517
PpsI	GAGTC	2 cut(s)	482, 517
PshBI	ATTAAT	1 cut(s)	579
PspN4I	GGNNCC	1 cut(s)	711
PstI	CTGCAG	2 cut(s)	37, 777
PstNI	CAGNNNCTG	1 cut(s)	772
PsuI	RGATCY	1 cut(s)	15
PteI	GCGCGC	1 cut(s)	789
PvuII	CAGCTG	3 cut(s)	38, 166, 593
RsaI	GTAC	3 cut(s)	57, 246, 711
RsaNI	GTAC	3 cut(s)	56, 245, 710
RseI	CAYNNNNRTG	2 cut(s)	105, 282
SapI	GCTCTTC	1 cut(s)	609
SaqAI	TTAA	3 cut(s)	579, 699, 799
SatI	GCNGC	3 cut(s)	36, 594, 776
Sau3AI	GATC	2 cut(s)	15, 637
SchI	GAGTC	2 cut(s)	483, 517
SduI	GDGCHC	2 cut(s)	472, 725
SfcI	CTRYAG	3 cut(s)	33, 662, 773
SmiMI	CAYNNNNRTG	2 cut(s)	105, 282
SmlI	CTYRAG	2 cut(s)	84, 525
SmoI	CTYRAG	2 cut(s)	84, 525
Sse9I	AATT	2 cut(s)	353, 669
SseBI	AGGCCT	1 cut(s)	236
SsiI	CCGC	1 cut(s)	760
SspMI	CTAG	3 cut(s)	251, 333, 363
StuI	AGGCCT	1 cut(s)	236
TaaI	ACNGT	1 cut(s)	188
TaiI	ACGT	1 cut(s)	652
TasI	AATT	2 cut(s)	353, 669
TatI	WGTACW	1 cut(s)	55
TfiI	GAWTC	4 cut(s)	329, 395, 438, 550
Tru1I	TTAA	3 cut(s)	579, 699, 799
Tru9I	TTAA	3 cut(s)	579, 699, 799
TscAI	CASTG	4 cut(s)	460, 551, 688, 730
TseFI	GTSAC	1 cut(s)	254
TseI	GCWGC	3 cut(s)	35, 593, 775
Tsp45I	GTSAC	1 cut(s)	254
TspDTI	ATGAA	4 cut(s)	89, 366, 426, 621
TspRI	CASTG	4 cut(s)	460, 551, 688, 730
VneI	GTGCAC	2 cut(s)	468, 721
VspI	ATTAAT	1 cut(s)	579
XapI	RAATTY	1 cut(s)	669
XmnI	GAANNNNTTC	1 cut(s)	442
XspI	CTAG	3 cut(s)	251, 333, 363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.