Rw3G017190

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Forward (+)
18622301 .. 18622872
572 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G017190.1

Sequence Viewer

Length: 312 bp
ATGGTTCCAGAAACTCCAATATCTCAGTATGGCAATTGTATAATCTTTTCTTCATGTAGGAGTTCTTATAAGCCTGATTGCTTTTCCCTTGTGCTTATTAATTGTTATTTTCTCTACTTCTCTCAGTGGCCTGAAGATCTCAGTGAAAGTTCTGTCCCTATCATTTCAAGCGGGACTAGTTGCCATTTTATGGTACAATTTGCTTATATAATAGGGAGAGAAGAGAAAAGTTGTCAGAGGATTTCTATTTTCGTCATGCACCAACTGAAACACAGAATATTTCTTTTGAACCCTGTGGAATCTTCTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.84

Weight (kDa)

6.25

Isoelectric Point (pI)

58.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 69
AccB7I CCANNNNNTGG 1 cut(s) 190
AciI CCGC 1 cut(s) 171
AcuI CTGAAG 1 cut(s) 153
AfaI GTAC 1 cut(s) 195
AfiI CCNNNNNNNGG 1 cut(s) 190
AgsI TTSAA 2 cut(s) 168, 289
AhlI ACTAGT 1 cut(s) 176
AoxI GGCC 1 cut(s) 128
AseI ATTAAT 1 cut(s) 99
BcuI ACTAGT 1 cut(s) 176
BfaI CTAG 2 cut(s) 177, 306
BglII AGATCT 1 cut(s) 136
BmiI GGNNCC 1 cut(s) 6
Bsc4I CCNNNNNNNGG 1 cut(s) 190
BseLI CCNNNNNNNGG 1 cut(s) 190
BseMII CTCAG 3 cut(s) 38, 137, 154
BshFI GGCC 1 cut(s) 130
BslFI GGGAC 2 cut(s) 140, 187
BslI CCNNNNNNNGG 1 cut(s) 190
BsmFI GGGAC 2 cut(s) 140, 187
BsnI GGCC 1 cut(s) 130
Bsp143I GATC 1 cut(s) 136
BspACI CCGC 1 cut(s) 171
BspANI GGCC 1 cut(s) 130
BspCNI CTCAG 3 cut(s) 37, 136, 153
BspLI GGNNCC 1 cut(s) 6
BssMI GATC 1 cut(s) 136
Bst6I CTCTTC 1 cut(s) 216
BstDEI CTNAG 3 cut(s) 24, 123, 140
BstKTI GATC 1 cut(s) 139
BstMBI GATC 1 cut(s) 136
BstX2I RGATCY 1 cut(s) 136
BstYI RGATCY 1 cut(s) 136
BsuRI GGCC 1 cut(s) 130
BtsIMutI CAGTG 2 cut(s) 131, 148
Csp6I GTAC 1 cut(s) 194
CviAII CATG 2 cut(s) 54, 256
CviJI RGCY 2 cut(s) 73, 130
CviKI_1 RGCY 2 cut(s) 73, 130
CviQI GTAC 1 cut(s) 194
DdeI CTNAG 3 cut(s) 24, 123, 140
DpnI GATC 1 cut(s) 138
DpnII GATC 1 cut(s) 136
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
Eco57I CTGAAG 1 cut(s) 153
FaeI CATG 2 cut(s) 57, 259
FaiI YATR 8 cut(s) 30, 41, 55, 69, 191, 207, 209, 257
FaqI GGGAC 2 cut(s) 140, 187
FatI CATG 2 cut(s) 53, 255
FauI CCCGC 1 cut(s) 164
FspBI CTAG 2 cut(s) 177, 306
HaeIII GGCC 1 cut(s) 130
Hin1II CATG 2 cut(s) 57, 259
HinfI GANTC 1 cut(s) 299
Hpy188I TCNGA 1 cut(s) 237
Hpy188III TCNNGA 1 cut(s) 8
HpyCH4V TGCA 1 cut(s) 259
HpyF3I CTNAG 3 cut(s) 24, 123, 140
Hsp92II CATG 2 cut(s) 57, 259
Kzo9I GATC 1 cut(s) 136
LpnPI CCDG 4 cut(s) 21, 87, 144, 306
MaeI CTAG 2 cut(s) 177, 306
MalI GATC 1 cut(s) 138
MboI GATC 1 cut(s) 136
MboII GAAGA 4 cut(s) 42, 146, 233, 294
MfeI CAATTG 1 cut(s) 34
MflI RGATCY 1 cut(s) 136
MluCI AATT 3 cut(s) 34, 100, 197
MnlI CCTC 1 cut(s) 231
MseI TTAA 1 cut(s) 99
MunI CAATTG 1 cut(s) 34
NdeII GATC 1 cut(s) 136
NlaIII CATG 2 cut(s) 57, 259
NlaIV GGNNCC 1 cut(s) 6
PfeI GAWTC 1 cut(s) 299
PflMI CCANNNNNTGG 1 cut(s) 190
PshBI ATTAAT 1 cut(s) 99
PsiI TTATAA 1 cut(s) 69
PspN4I GGNNCC 1 cut(s) 6
PsuI RGATCY 1 cut(s) 136
RsaI GTAC 1 cut(s) 195
RsaNI GTAC 1 cut(s) 194
SaqAI TTAA 1 cut(s) 99
Sau3AI GATC 1 cut(s) 136
SpeI ACTAGT 1 cut(s) 176
Sse9I AATT 3 cut(s) 34, 100, 197
SsiI CCGC 1 cut(s) 171
SspI AATATT 1 cut(s) 279
SspMI CTAG 2 cut(s) 177, 306
TasI AATT 3 cut(s) 34, 100, 197
TfiI GAWTC 1 cut(s) 299
Tru1I TTAA 1 cut(s) 99
Tru9I TTAA 1 cut(s) 99
TscAI CASTG 2 cut(s) 131, 148
TspDTI ATGAA 1 cut(s) 42
TspRI CASTG 2 cut(s) 131, 148
Van91I CCANNNNNTGG 1 cut(s) 190
VspI ATTAAT 1 cut(s) 99
XspI CTAG 2 cut(s) 177, 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.