Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001516

Physical Location & Seq

Genomic Coordinates Forward (+)

52594976 .. 52597802

Gene Structure 2827 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029979

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGTGGCGTCCGATTCAAGCATTTCCTTCCTTGAGTATCGTCGGATCTTGTATCTCACTCGCAGCGAATCGTGCATAGCTCGACCTCCATGGCCGTCAGAAGCATCGATTTCAAGTGAATTGCACATTGTCAGTGCAAGGCGAACCAATGCAGACGATACCACTGATGATGATTTACCAAGTACCTCGGAGTGCCAATTTACAGATGCAGTAGCCTCTGATTCAGCACACTCCAATGATCCAAAGCATTTTGGTCAATCTCCTCTCCCTCCTTATCAACCAGCTTTTGATTGGGAAAGTGAAAGATCATTGACATGCGGTCAAAGGGTTCCAGAAACTCCAATATCTCATGGCCTGAAGATCTCAGTGAAAGTTCTGTCCCTATCATTTCAAGCGGGACTGGTTGGGAGAGGAGAAAAGTTGACAGAGGATTTCTATTTTCGTCACGCACCAACAGAAACACAGAATATTTCTTTTGAACCCCGTGGAATCTTCTATTTAGATGCTCCATCATCATCAGTTTGTCTTCTGATCCAGTTAGAGAAGCACGCCACAGAAGAAGGCGGGGTTACGCCGACGCCTACAGTTTATTCTCGTAAAGAACCGATGGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0006810 GO:0008064 GO:0008150 GO:0008360 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009958 GO:0009966 GO:0009987 GO:0010646 GO:0010928 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0017016 GO:0017048 GO:0019898 GO:0019899 GO:0022603 GO:0022604 GO:0023051 GO:0030832 GO:0031267 GO:0032535 GO:0032956 GO:0032970 GO:0033043 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051020 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0065007 GO:0065008 GO:0065009 GO:0070971 GO:0071840 GO:0071944 GO:0090066 GO:0098772 GO:0110053 GO:1902903

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DHR-2 DOCK-C2

Protein Analysis

205

Amino Acids

22.55

Weight (kDa)

5.02

Isoelectric Point (pI)

61.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16340 AT4G16340
fragaria_vesca	FvH4_3g14770 FvH4_3g14770 FvH4_3g14770
malus_domestica	MD05G1229900.v1.1 MD05G1233200.v1.1 MD10G1209700.v1.1
prunus_persica	Prupe.3G108400_v2.0.a1 Prupe.4G132800_v2.0.a1
pyrus_communis	pycom05g21080 pycom05g21090 pycom10g17800 pycom10g17820
rosa_chinensis	RchiOBHm_Chr1g0327621 RchiOBHm_Chr3g0473981 RchiOBHm_Chr5g0024291 RchiOBHm_Chr5g0024301 RchiOBHm_Chr5g0024371 RchiOBHm_Chr5g0024381
rosa_laevigata	RLG00000029979 RLG00000032795 RLG00000036969
rosa_multiflora	Rmu_co8048528.1_g000001 Rmu_co8378897.1_g000002 Rmu_sc0005861.1_g000003 Rmu_sc0015218.1_g000005 Rmu_ssc0000042.1_g000009
rosa_roxburghii	Rroxscaffold_1G00054850 Rroxscaffold_1G00054890 Rroxscaffold_1G00055790 Rroxscaffold_1G00055850 Rroxscaffold_4G00322510
rosa_rugosa	Rorug01G0068800 Rorug05G0083000 Rorug05G0083100
rosa_samantha	Rh3AG187600 Rh3BG216300 Rh3CG212800 Rh5AG173700 Rh5BG170500 Rh5BG170900 Rh5BG171900 Rh5BG172000 Rh5CG186800 Rh5CG187500 Rh5CG187600 Rh5DG173100
rosa_wichuraiana	Rw0G000890 Rw3G017190 Rw5G015680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	318, 395, 564
AclWI	GGATC	3 cut(s)	53, 233, 526
AcoI	YGGCCR	1 cut(s)	92
AcuI	CTGAAG	1 cut(s)	377
AcyI	GRCGYC	2 cut(s)	8, 578
AfaI	GTAC	1 cut(s)	184
AgsI	TTSAA	4 cut(s)	18, 114, 392, 479
AhdI	GACNNNNNGTC	1 cut(s)	318
AluBI	AGCT	2 cut(s)	80, 284
AluI	AGCT	2 cut(s)	80, 284
AlwI	GGATC	3 cut(s)	53, 233, 526
AoxI	GGCC	2 cut(s)	92, 352
ApeKI	GCWGC	1 cut(s)	63
BbsI	GAAGAC	1 cut(s)	518
BbvI	GCAGC	1 cut(s)	75
BccI	CCATC	2 cut(s)	517, 601
BceAI	ACGGC	1 cut(s)	79
BfmI	CTRYAG	1 cut(s)	582
BglII	AGATCT	1 cut(s)	360
BisI	GCNGC	1 cut(s)	64
BlsI	GCNGC	1 cut(s)	65
BmeRI	GACNNNNNGTC	1 cut(s)	318
BmiI	GGNNCC	1 cut(s)	330
BmsI	GCATC	3 cut(s)	113, 196, 493
BpiI	GAAGAC	1 cut(s)	518
BpuEI	CTTGAG	1 cut(s)	53
Bsa29I	ATCGAT	1 cut(s)	107
BsaHI	GRCGYC	2 cut(s)	8, 578
BsaJI	CCNNGG	3 cut(s)	89, 186, 484
Bse1I	ACTGG	2 cut(s)	405, 535
BseCI	ATCGAT	1 cut(s)	107
BseDI	CCNNGG	3 cut(s)	89, 186, 484
BseMII	CTCAG	1 cut(s)	378
BseNI	ACTGG	2 cut(s)	405, 535
BseRI	GAGGAG	2 cut(s)	252, 426
BseXI	GCAGC	1 cut(s)	75
BshFI	GGCC	2 cut(s)	94, 354
BshVI	ATCGAT	1 cut(s)	107
BslFI	GGGAC	2 cut(s)	364, 411
BsmFI	GGGAC	2 cut(s)	364, 411
BsnI	GGCC	2 cut(s)	94, 354
Bsp143I	GATC	5 cut(s)	45, 238, 305, 360, 531
Bsp19I	CCATGG	1 cut(s)	89
BspACI	CCGC	3 cut(s)	318, 395, 564
BspANI	GGCC	2 cut(s)	94, 354
BspCNI	CTCAG	1 cut(s)	377
BspDI	ATCGAT	1 cut(s)	107
BspLI	GGNNCC	1 cut(s)	330
BspPI	GGATC	3 cut(s)	53, 233, 526
BsrI	ACTGG	2 cut(s)	405, 535
BssECI	CCNNGG	3 cut(s)	89, 186, 484
BssMI	GATC	5 cut(s)	45, 238, 305, 360, 531
BssNI	GRCGYC	2 cut(s)	8, 578
BssT1I	CCWWGG	1 cut(s)	89
Bst4CI	ACNGT	1 cut(s)	586
BstACI	GRCGYC	2 cut(s)	8, 578
BstC8I	GCNNGC	1 cut(s)	549
BstDEI	CTNAG	1 cut(s)	364
BstDSI	CCRYGG	2 cut(s)	89, 484
BstKTI	GATC	5 cut(s)	48, 241, 308, 363, 534
BstMBI	GATC	5 cut(s)	45, 238, 305, 360, 531
BstMWI	GCNNNNNNNGC	1 cut(s)	72
BstNSI	RCATGY	1 cut(s)	318
BstSFI	CTRYAG	1 cut(s)	582
BstV1I	GCAGC	1 cut(s)	75
BstV2I	GAAGAC	1 cut(s)	518
BstX2I	RGATCY	2 cut(s)	45, 360
BstYI	RGATCY	2 cut(s)	45, 360
Bsu15I	ATCGAT	1 cut(s)	107
BsuRI	GGCC	2 cut(s)	94, 354
BsuTUI	ATCGAT	1 cut(s)	107
BtgI	CCRYGG	2 cut(s)	89, 484
BtsIMutI	CAGTG	3 cut(s)	139, 162, 372
Cac8I	GCNNGC	1 cut(s)	549
ClaI	ATCGAT	1 cut(s)	107
CseI	GACGC	1 cut(s)	586
Csp6I	GTAC	1 cut(s)	183
CviAII	CATG	3 cut(s)	90, 315, 350
CviJI	RGCY	5 cut(s)	80, 94, 215, 284, 354
CviKI_1	RGCY	5 cut(s)	80, 94, 215, 284, 354
CviQI	GTAC	1 cut(s)	183
DdeI	CTNAG	1 cut(s)	364
DpnI	GATC	5 cut(s)	47, 240, 307, 362, 533
DpnII	GATC	5 cut(s)	45, 238, 305, 360, 531
DriI	GACNNNNNGTC	1 cut(s)	318
EaeI	YGGCCR	1 cut(s)	92
Eam1105I	GACNNNNNGTC	1 cut(s)	318
Eco130I	CCWWGG	1 cut(s)	89
Eco57I	CTGAAG	1 cut(s)	377
EcoT14I	CCWWGG	1 cut(s)	89
ErhI	CCWWGG	1 cut(s)	89
FaeI	CATG	3 cut(s)	93, 318, 353
FaiI	YATR	4 cut(s)	77, 91, 316, 351
FaqI	GGGAC	2 cut(s)	364, 411
FatI	CATG	3 cut(s)	89, 314, 349
FauI	CCCGC	2 cut(s)	388, 557
Fnu4HI	GCNGC	1 cut(s)	64
Fsp4HI	GCNGC	1 cut(s)	64
GluI	GCNGC	1 cut(s)	64
HaeIII	GGCC	2 cut(s)	94, 354
HgaI	GACGC	1 cut(s)	586
Hin1I	GRCGYC	2 cut(s)	8, 578
Hin1II	CATG	3 cut(s)	93, 318, 353
HincII	GTYRAC	1 cut(s)	423
HindII	GTYRAC	1 cut(s)	423
HinfI	GANTC	4 cut(s)	14, 68, 221, 489
Hpy166II	GTNNAC	1 cut(s)	423
Hpy188I	TCNGA	6 cut(s)	13, 45, 100, 190, 220, 531
Hpy188III	TCNNGA	1 cut(s)	332
Hpy8I	GTNNAC	1 cut(s)	423
Hpy99I	CGWCG	2 cut(s)	45, 580
HpyAV	CCTTC	2 cut(s)	37, 554
HpyCH4III	ACNGT	1 cut(s)	586
HpyCH4V	TGCA	5 cut(s)	75, 124, 137, 152, 209
HpyF10VI	GCNNNNNNNGC	1 cut(s)	72
HpyF3I	CTNAG	1 cut(s)	364
Hsp92I	GRCGYC	2 cut(s)	8, 578
Hsp92II	CATG	3 cut(s)	93, 318, 353
Kzo9I	GATC	5 cut(s)	45, 238, 305, 360, 531
LmnI	GCTCC	1 cut(s)	511
LpnPI	CCDG	5 cut(s)	294, 345, 368, 386, 548
Lsp1109I	GCAGC	1 cut(s)	75
LweI	GCATC	3 cut(s)	113, 196, 493
MaeIII	GTNAC	2 cut(s)	443, 568
MalI	GATC	5 cut(s)	47, 240, 307, 362, 533
MboI	GATC	5 cut(s)	45, 238, 305, 360, 531
MboII	GAAGA	4 cut(s)	370, 484, 518, 569
MflI	RGATCY	2 cut(s)	45, 360
MluCI	AATT	2 cut(s)	119, 197
MmeI	TCCRAC	1 cut(s)	23
MnlI	CCTC	7 cut(s)	96, 196, 226, 273, 279, 404, 421
MslI	CAYNNNNRTG	2 cut(s)	234, 313
MwoI	GCNNNNNNNGC	1 cut(s)	72
NcoI	CCATGG	1 cut(s)	89
NdeII	GATC	5 cut(s)	45, 238, 305, 360, 531
NlaIII	CATG	3 cut(s)	93, 318, 353
NlaIV	GGNNCC	1 cut(s)	330
NmuCI	GTSAC	1 cut(s)	443
NspI	RCATGY	1 cut(s)	318
PfeI	GAWTC	4 cut(s)	14, 68, 221, 489
PkrI	GCNGC	1 cut(s)	65
PspN4I	GGNNCC	1 cut(s)	330
PsuI	RGATCY	2 cut(s)	45, 360
RsaI	GTAC	1 cut(s)	184
RsaNI	GTAC	1 cut(s)	183
RseI	CAYNNNNRTG	2 cut(s)	234, 313
SatI	GCNGC	1 cut(s)	64
Sau3AI	GATC	5 cut(s)	45, 238, 305, 360, 531
SetI	ASST	4 cut(s)	82, 88, 188, 286
SfaNI	GCATC	3 cut(s)	113, 196, 493
SfcI	CTRYAG	1 cut(s)	582
SmiMI	CAYNNNNRTG	2 cut(s)	234, 313
SmlI	CTYRAG	1 cut(s)	32
SmoI	CTYRAG	1 cut(s)	32
Sse9I	AATT	2 cut(s)	119, 197
SsiI	CCGC	3 cut(s)	318, 395, 564
SspI	AATATT	1 cut(s)	469
StyI	CCWWGG	1 cut(s)	89
TaaI	ACNGT	1 cut(s)	586
TaqI	TCGA	2 cut(s)	82, 107
TasI	AATT	2 cut(s)	119, 197
TfiI	GAWTC	4 cut(s)	14, 68, 221, 489
TscAI	CASTG	3 cut(s)	139, 169, 372
TseFI	GTSAC	1 cut(s)	443
TseI	GCWGC	1 cut(s)	63
Tsp45I	GTSAC	1 cut(s)	443
TspRI	CASTG	3 cut(s)	139, 169, 372
XceI	RCATGY	1 cut(s)	318
XcmI	CCANNNNNNNNNTGG	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.