Rw5G015680

Belongs to the DOCK family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
19451334 .. 19466882
15549 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G015680.1

Sequence Viewer

Length: 5472 bp
ATGCTCAGCCTCCGCCCTCGCCGCGATTCTACTCCGGCCACCACCAAATGGCACAACAAGTTTGAGGAGAATTTGGAGCAGTGGCCACATCTGAAGGAGCTGGTGCAGTGTTACACCACAGACTGGGTTAAAGATGACAACAAGTATGGCCATTACGAGAGTGTTGGTCCGCCGTCGTTTCAGAACCAGATTTATGAGGGGCCTGACACTGATATTGAGACTGAAATGCACCTTGCTGGTGCAAGGCGAACCAAGGCGGATGATACCACTGATGATGATTTACCAAGTACCTCAGGGCGCCAATTTACGGATGCAATAGCATCTGATTCAGCACACTCCAATGATCCAAAGCATTTTGGTCAATCTCCTCTCCCTGCTTATGAACCAGCTTTTGATTGGGAAAATGAAAGATCATTGATATGCGGTCAAAGGGTTCCAGAAACTCCAATATCTCATGGCCTGAAGATCTCAGTGAAAGTTCTGTCCCTATCATTTCAAGCTGGACTAGTTGAGCCATTTTATGGTACAATTTGCTTATATAATAGGGAGAGAATAGAAAAGTTGTCAGAGGATTTCTATTTTCGTCATGCACCAACTGAAACACAGAATATTTCTGTTGAACCCCGTGGAATCTTCTATTTAGACGCTCCATCATCATCAGTTTGTCTTCTGATCCAGTTAGAGAAGCATGCCACAGAAGAAGGCGGGGTTACGCCTACAGTTTATTCTCGTAAAGAACCGGTACATCTGACTGAGAAAGAAAAGCAAAAACTGCAGGTGTGGTCTCAAATAATGCCTTACAGAGAGTCCTTCGCCTGGGCTATTGTTTCATTATTTGATAACAGCATTGGTGCAGCTTCTGGTGGGTCTGCTTCCCCAAGCAGTCCTCTTGCTCCTAGTATATCAGGTAGTTCTCATGAGGGTGTGTTTGAGCCTAGTGCTAAAGTCACATTAGATGGGAAGCTAGGCTATTCAAGTCGAAGCTCCGTCGTTGTCGAAATATCAAACTTAAACAAAGTTAAAGAAAGCTATACTGAGGACTCACTTCAGGATCCCAATCGCAAGGTTCATAAACCTGTGAAAGGTGTTTTGAGGCTGGAAATTGAGAAGCACCAGAATGACAATGTTGACCTGGAAAATTTATCAGAAAGTGGTAGTGTGACCAATGACTCTATTGATGATCGCATTAACGATTCCACGTTTGGGAAGCTCCCAAGTAATGGTTTGGATGGTCCTCAGGGTAGCAGTTCTAAGTGGAATTCTTTTGATACCAAAGAGATTTCTGGGAATGGATCAAGTTCTCATGGAAATCCAGTTACCGGTCCTGATGATTTTCAAGCTTTTGACTTCCGTACTACAACAAGAAACGAGCCTTTCTTGCAGCTTTTTCATTGTCTCTATGTATATCCCATGACTGTTAGTTTAAGTCGAAAGAGGAATTTGTTCATAAGGGTTGAACTTCGGGAGGATGATAATGATATTCGTGGACAGCCTTTAGAGGCAATGTATCCAAGGGAGCCAGGTGCATCACTACAGAAGTCGGCTCACACACAAGTGACTGTGGGGGCGAGGGTAGCATGCTACCATGATGAGATCAAACTTTCCCTCCCTGCTATGTGGACACCAACACATCATCTCTTGTTTACTTTTTTTCATGTTGATCTTCAAACAAAGTTGGAAGCACCAAAGCCTGTAGTAATTGGATACGCGTCACTTCCACTGTCCACACATGCACAGTTGCGATCTGAAATTTCATTGCCAATTATGAAAGAGTTGGTTCCACATTATCTTCAGGATATGGGCAGAGAGAGGTTGGATTATTTGGAAGATGGAAAGAATATCTTCAGATTGCGCTTAAGACTTTGTTCGTCATTATATCCGATCAATGAGCGAATAAGAGATTTTTTTCTTGAATATGATAGACACACTCTTCGAACAAGTGCACCTTGGGGTTCTGAACTTCTGGAGGCTATTAACAGTTTAAAGAATGTTGATTCCATTGCTCTGCTTCAGTTTCTCCATCCAATTTTGAACATGCTCCTCCATTTAATAGGCAATGGCGGAGAAACCCTCCAGGTTGCAGCTTTCAGAGCCATGGTTAATATCGTTACCCGGGTGCAGCAGGAGTCAGTTGATGATGCGGAAAGAAACCATTTCCTCGTCAACTATGTTGATTATGCTTTTGATGACTTTGGGGGTCGCCAACCACCAGTTTATCCTGGTTTGTCAACTGTTTGGGGAAGTTTGGCTCGTAGTAAGGCCAAAGGATACCGTGTTGGACCTGTGTATGATGATGTTTTGGCAATGGCTTGGTTTTTCCTTGAGCTAATTGTCAAGTCAATGGCATTGGAAAAGATGCGACTCTTCTATCATAATCTTCCATTAGGTGAAGACATTCCACCTATGCAATTGAAAGAAGGTGTATTCAGATGCATAATGCAGTTGTATGATTGCCTACTAACTGAGGTGCACGAACGTTGTAAGAAGGGACTGGGCTTGGCAAAGCGTTTAAATAGCAGTTTGGCTTTCTTTTGTTATGATCTCTTGTCGATTATCGAACCTCGCCAAGTTTTTGAATTGGTGTCCTTGTACCTTGACAAGTTTTCTGGGGTATGTCAATCGGTTTTGCATGATTGCAAACTCACATTTTTGCAAATCATTTGTGATCATGATCTTTTTGTGGAAATGCCTGGGAGAGACCCTTCTGATAGGAACTACCTCTCTTCTGTTTTGATCCAAGAGCTTTTTCTTACTTGGGATCATGATGATTTATCTTTGCGGGCAAAGGCCGCTAGAGTTTTAGTAGTCTTGTTGTGCAAGCATGAGTTTGATGCTCGATACCAGAAGCCTGAAGATAAATTATATATTGCCCAGCTATATTTTCCACTTATCGGACAGATTCTAGATGAAATGCCAGTCTTTTACAATCTCAATGCTGTTGAAAAGCGTGAAGTCTTGGTTGCTATTTTACAAATTGTGCGGAACCTTGATGATGCTTCACTTGTCAAGGCATGGCAGCAGAGCATCGCTAGAACTAGATTATTCTTCAAACTCATGGAGGAATGCCTTGTTCTATTTGAGCACAGAAAACCTGCTGATGGCATGCTTATGGGTTCTAGTTCTCGAAGTCCTGTTGGTGATGGCCCTGCTTCTCCCAAGTATTCTGATAGACTTTCTCCTGCAATCAACAACTATCTGTCTGAGGCATCCCGACAAGAAGTCAGACCTCAAGGTACACCCGAAAATGGTTACTCATGGCAGAGAGTAAATTCTCAGTTAAGCTCTCCTAGCCAGCCATATTCCTTGAGAGAAGCTCTCGCTCAGGCACAATCTTCCAGGATTGGAGCTTCTGCTCAAGCACTAAGAGAATCTTTGCATCCAATATTGAGGCAAAAATTGGAGCTCTGGGAAGAAAACTTGAGTGCTTCTGTCAGTCAGCAGGTTTTGGAAATAACTGAGAAGTTTACCGTAATGGCGGCATCACATAGCATCGCTACCGACTACGGAAAATTTGATTGCGTCACAGCCATATTCATGAGCTTCTTCTCTCGAAATCAATCACTGACTTTCTGGAAATCATTGCTTCCTGTCTTCAACAGTGTCTTCAATCTTCATGGCGCAACTTTGATGTCAAGGGAAAATGACCGCTTCTTAAAGCAAGTCACTTTCCATCTTCTTCGACTTGCAGTGTTCCGAAATGATAATATCAGAAAAAGGGCTGTTACTGGGCTCCAGATACTCATGAGGAGTTCTTTCTACTACTTTATGCAAACAGCAAGATTGAGGGCCATGCTAATCATCACATTATCAGAGTTGATGTCTGATGTACAAGTGACTCAGATGAAGGCTGATGGAACACTAGAAGAGAGTGGTGAAGCACGGCGCCTTCGCAGATCACTGGAGGAAGTGGCAGATGCAGCTAAGAGCCCCAGTCTATTGAGAGAGTGTGGACTTCCTGAGAGTGCCTTGTTAGAAATTCCTGAAAAAATGACTGAAAATAGGTGGTCCTGGTCAGACGTGAAATTTCTTTCTGACAGTCTTCTTCTTGCTCTTGATGCCAGCTTGGAACATGCACTCCTGGGCTCTTTGATGACTATGGATAGATATGCAGCTGCAGAAAGCTTCTATAAGCTTGCTATGGCATTTGCCCCTGTCCCAGATCTTCATATATGTGTTACTAAAATGCAGTCGTGGGCAGAATCTGCTCAGTGTGCTGTCGCTGTGGCTGGTATTGTAATGCAGGCTTTGGTGGCCAGAAATGATGGTGTTTGGAGCAAAGATCACATAAGTGCTCTACGTAAAATTTGTCCAATGGTCAGTAGTGAGATCAGCTCTGAGGCTGCTGCAGCTGAGGTAGAGGGATATGGTGCATCAAAACTTACTGTTGACTCTGCCGTGAAGTACCTACAACTTGCAAATAAGCTCTTTTCTCAAGCTGAACTTTTTCACTTCTGTGCAAGCATTCTGGAACTTGTTATTCCAGTTTATAAAAGCAGGCGGGCATATGGACAGCTGAGCAAATGTCACACAATGCTTACTAACATATATGAATCAATCCTTGAGCAGGAATCAAGCCCAATTCCATTCACTGATGCAACATACTATAGGGTGGGGTTTTATGGTGATAGATTTGGAAAACTGGACAGAAAGGAATATGTATACAGGGAGCCACGTGATGTAAGACTAGGTGACATAATGGAGAAACTTAGCCATATCTACGAGTCTAGGATGGATGGAAATCACACCTTACACATCATTCCGGATTCTAGGCAGGTAAAGGCAGATGAGTTGCAGCCTGGAGTATGCTATCTTCAGATAACTGCTGTTGATCCAGTCATGGAAGATGAAGATTTGGGAAGCAGAAGGGAGAGAATCTTTTCTCTTTCGACGGGAAGTGTTCGTGCGCGAGTCTTTGACCGCTTTTTGTTCGATACACCTTTTACGAAAAATGGAAAAACTCAAGGTGGATTGGAAGACCAGTGGAAGAGGCGGACTGTTCTTCAGACTGAAGGTTCATTCCCAGCTCTTGTTAACAGGCTTGTAGTTACTAAATCCGAATCGCTTGAGTTCTCCCCTGTAGAAAATGCCATTGGAATGATTGAAACTCGGACGGCTGCTCTACGTAATGAACTTGAAGAGCCTCGCAGTTCTGAGGGGGATCAACTCCCACGTCTCCAGAGCCTACAGAGAATTCTTCAAGGAAGTGTTGCAGTTCAGGTCAACAGTGGTGTTCTAAGTGTGTGCACTGCATTCCTTTCCGGTGAACCAGCGACAAGGTTGCGGTCACAAGAATTGCAGCAACTCATTGCAGCGCTCCTTGAATTTATGGCTGTATGCAAGCGTGCCATCCGTGTACACTTCAGATTGATTGGCGAGGAAGACCAAGAATTCCACACACAGCTTGTGAATGGATTTCAATCTCTAACTGCTGAGTTATCTCATTATATCCCTGCCATCCTGTCCGAGCTGTGA

Protein Analysis

1823

Amino Acids

205.97

Weight (kDa)

5.8

Isoelectric Point (pI)

53.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DOCK-C2 PF14429 461 - 630 2.6e-34 C2 domain in Dock180 and Zizimin proteins
DHR-2_Lobe_A PF06920 1393 - 1521 9.1e-26 DHR-2, Lobe A
DHR-2_Lobe_B PF20422 1589 - 1671 1.8e-22 DHR-2, Lobe B
DHR-2_Lobe_C PF20421 1719 - 1815 2.7e-26 DHR-2, Lobe C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 4488
AarI CACCTGC 1 cut(s) 766
Acc36I ACCTGC 4 cut(s) 766, 3100, 3430, 4762
AccB1I GGYRCC 2 cut(s) 297, 3882
AccB7I CCANNNNNTGG 4 cut(s) 48, 123, 521, 1220
AccI GTMKAC 1 cut(s) 4659
AccII CGCG 3 cut(s) 24, 1709, 4906
AccIII TCCGGA 1 cut(s) 4759
AclI AACGTT 1 cut(s) 2476
AclWI GGATC 9 cut(s) 338, 667, 1046, 1059, 1300, 2728, 2766, 4823, 5166
AcoI YGGCCR 4 cut(s) 36, 83, 148, 4251
AcvI CACGTG 1 cut(s) 4673
AcyI GRCGYC 2 cut(s) 298, 3883
AfaI GTAC 9 cut(s) 289, 526, 744, 1354, 2591, 3235, 3828, 4403, 5355
AfeI AGCGCT 1 cut(s) 5313
AflII CTTAAG 1 cut(s) 1855
AflIII ACRYGT 1 cut(s) 1707
AgeI ACCGGT 2 cut(s) 739, 1319
AhdI GACNNNNNGTC 1 cut(s) 3218
AhlI ACTAGT 1 cut(s) 505
AjiI CACGTC 2 cut(s) 4018, 5171
AjuI GAANNNNNNNTTGG 4 cut(s) 2730, 2762, 5073, 5105
AleI CACNNNNGTG 3 cut(s) 1553, 4287, 4452
AloI GAACNNNNNNTCC 2 cut(s) 4059, 4091
Alw21I GWGCWC 6 cut(s) 1945, 2472, 3084, 3405, 4294, 5246
Alw26I GTCTC 5 cut(s) 212, 789, 1400, 2691, 5177
Alw44I GTGCAC 3 cut(s) 1941, 2468, 5242
AlwI GGATC 9 cut(s) 338, 667, 1046, 1059, 1300, 2728, 2766, 4823, 5166
AlwNI CAGNNNCTG 2 cut(s) 860, 4202
Ama87I CYCGRG 1 cut(s) 2112
Aor13HI TCCGGA 1 cut(s) 4759
Aor51HI AGCGCT 1 cut(s) 5313
ApaLI GTGCAC 3 cut(s) 1941, 2468, 5242
ArsI GACNNNNNNTTYG 2 cut(s) 1914, 1946
AsiGI ACCGGT 2 cut(s) 739, 1319
Asp700I GAANNNNTTC 5 cut(s) 1442, 1841, 2394, 4443, 4876
AspLEI GCGC 6 cut(s) 300, 1854, 3620, 3885, 4906, 5314
AspS9I GGNCC 8 cut(s) 167, 200, 1232, 1322, 2279, 3143, 3786, 4005
AsuC2I CCSGG 2 cut(s) 2113, 2114
AsuHPI GGTGA 6 cut(s) 2399, 3149, 3884, 4634, 4700, 5273
AsuII TTCGAA 1 cut(s) 1933
AvaI CYCGRG 1 cut(s) 2112
AvaII GGWCC 5 cut(s) 167, 1232, 1322, 2279, 4005
AxyI CCTNAGG 2 cut(s) 292, 1236
BaeGI GKGCMC 3 cut(s) 1945, 2472, 5246
BalI TGGCCA 3 cut(s) 85, 150, 4253
BamHI GGATCC 1 cut(s) 1051
BanI GGYRCC 2 cut(s) 297, 3882
BanII GRGCYC 4 cut(s) 3405, 3732, 3929, 4085
BarI GAAGNNNNNNTAC 2 cut(s) 4794, 4826
BbrPI CACGTG 1 cut(s) 4673
BbsI GAAGAC 7 cut(s) 659, 2397, 3583, 3595, 4031, 4980, 5385
Bbv12I GWGCWC 6 cut(s) 1945, 2472, 3084, 3405, 4294, 5246
BbvCI CCTCAGC 1 cut(s) 4350
BceAI ACGGC 4 cut(s) 157, 3896, 4379, 5127
BcgI CGANNNNNNTGC 2 cut(s) 5260, 5294
BciVI GTATCC 3 cut(s) 1518, 1697, 2261
BclI TGATCA 1 cut(s) 2665
BcnI CCSGG 2 cut(s) 2113, 2114
BcoDI GTCTC 5 cut(s) 212, 789, 1400, 2691, 5177
BcuI ACTAGT 1 cut(s) 505
BfmI CTRYAG 9 cut(s) 717, 773, 1532, 1692, 4113, 4344, 4603, 5076, 5183
BfoI RGCGCY 3 cut(s) 301, 3886, 5315
BfrI CTTAAG 1 cut(s) 1855
BfuAI ACCTGC 4 cut(s) 766, 3100, 3430, 4762
BfuI GTATCC 3 cut(s) 1518, 1697, 2261
BglII AGATCT 2 cut(s) 465, 4159
BlpI GCTNAGC 2 cut(s) 5, 4514
Bme18I GGWCC 5 cut(s) 167, 1232, 1322, 2279, 4005
BmeRI GACNNNNNGTC 1 cut(s) 3218
BmeT110I CYCGRG 1 cut(s) 2112
BmgBI CACGTC 2 cut(s) 4018, 5171
BmgT120I GGNCC 8 cut(s) 167, 200, 1232, 1322, 2279, 3143, 3786, 4005
BmrI ACTGGG 4 cut(s) 133, 2501, 3735, 3924
BmuI ACTGGG 4 cut(s) 133, 2501, 3735, 3924
BpiI GAAGAC 7 cut(s) 659, 2397, 3583, 3595, 4031, 4980, 5385
BplI GAGNNNNNCTC 8 cut(s) 2055, 2087, 3298, 3330, 3300, 3332, 4316, 4348
BpmI CTGGAG 6 cut(s) 1985, 2057, 3716, 3920, 4818, 5159
Bpu10I CCTNAGC 2 cut(s) 3321, 4350
Bpu1102I GCTNAGC 2 cut(s) 5, 4514
Bpu14I TTCGAA 1 cut(s) 1933
BpuEI CTTGAG 9 cut(s) 2342, 3213, 3325, 3339, 3439, 4416, 4580, 4944, 5084
BpuMI CCSGG 2 cut(s) 2113, 2114
BsaAI YACGTR 3 cut(s) 4298, 4673, 5123
BsaBI GATNNNNATC 4 cut(s) 1056, 2670, 4737, 5416
BsaHI GRCGYC 2 cut(s) 298, 3883
BsaI GGTCTC 2 cut(s) 789, 2691
BsaJI CCNNGG 9 cut(s) 252, 625, 816, 1511, 1946, 2094, 2112, 2690, 4078
BsaWI WCCGGW 4 cut(s) 739, 1319, 4759, 5258
BsaXI ACNNNNNCTCC 4 cut(s) 1590, 1620, 4059, 4089
Bse118I RCCGGY 2 cut(s) 739, 1319
Bse21I CCTNAGG 2 cut(s) 292, 1236
Bse3DI GCAATG 7 cut(s) 1509, 1754, 1998, 2062, 2310, 3578, 5304
Bse8I GATNNNNATC 4 cut(s) 1056, 2670, 4737, 5416
BseAI TCCGGA 1 cut(s) 4759
BseDI CCNNGG 9 cut(s) 252, 625, 816, 1511, 1946, 2094, 2112, 2690, 4078
BseJI GATNNNNATC 4 cut(s) 1056, 2670, 4737, 5416
BseMI GCAATG 7 cut(s) 1509, 1754, 1998, 2062, 2310, 3578, 5304
BseRI GAGGAG 4 cut(s) 80, 357, 2030, 3760
BseSI GKGCMC 3 cut(s) 1945, 2472, 5246
BseYI CCCAGC 2 cut(s) 2871, 5020
BsgI GTGCAG 3 cut(s) 125, 873, 2138
Bsh1236I CGCG 3 cut(s) 24, 1709, 4906
BshNI GGYRCC 2 cut(s) 297, 3882
BshTI ACCGGT 2 cut(s) 739, 1319
BsiHKAI GWGCWC 6 cut(s) 1945, 2472, 3084, 3405, 4294, 5246
BsiHKCI CYCGRG 1 cut(s) 2112
BsiSI CCGG 6 cut(s) 35, 740, 1320, 2113, 4760, 5259
BslFI GGGAC 3 cut(s) 469, 2502, 4139
BsmAI GTCTC 5 cut(s) 212, 789, 1400, 2691, 5177
BsmBI CGTCTC 1 cut(s) 5177
BsmFI GGGAC 3 cut(s) 469, 2502, 4139
BsmI GAATGC 3 cut(s) 3068, 4461, 5249
Bso31I GGTCTC 2 cut(s) 789, 2691
BsoBI CYCGRG 1 cut(s) 2112
Bsp119I TTCGAA 1 cut(s) 1933
Bsp1286I GDGCHC 9 cut(s) 1945, 2472, 3084, 3405, 3732, 3929, 4085, 4294, 5246
Bsp13I TCCGGA 1 cut(s) 4759
Bsp1407I TGTACA 2 cut(s) 3826, 5353
Bsp1720I GCTNAGC 2 cut(s) 5, 4514
Bsp19I CCATGG 1 cut(s) 2094
BspEI TCCGGA 1 cut(s) 4759
BspFNI CGCG 3 cut(s) 24, 1709, 4906
BspHI TCATGA 5 cut(s) 916, 2668, 2761, 3534, 3741
BspMAI CTGCAG 3 cut(s) 777, 4117, 4348
BspMI ACCTGC 4 cut(s) 766, 3100, 3430, 4762
BspPI GGATC 9 cut(s) 338, 667, 1046, 1059, 1300, 2728, 2766, 4823, 5166
BspQI GCTCTTC 1 cut(s) 5130
BspT104I TTCGAA 1 cut(s) 1933
BspT107I GGYRCC 2 cut(s) 297, 3882
BspTI CTTAAG 1 cut(s) 1855
BspTNI GGTCTC 2 cut(s) 789, 2691
BsrDI GCAATG 7 cut(s) 1509, 1754, 1998, 2062, 2310, 3578, 5304
BsrFI RCCGGY 2 cut(s) 739, 1319
BsrGI TGTACA 2 cut(s) 3826, 5353
BssAI RCCGGY 2 cut(s) 739, 1319
BssECI CCNNGG 9 cut(s) 252, 625, 816, 1511, 1946, 2094, 2112, 2690, 4078
BssNAI GTATAC 1 cut(s) 4660
BssNI GRCGYC 2 cut(s) 298, 3883
BssT1I CCWWGG 4 cut(s) 252, 1511, 1946, 2094
Bst1107I GTATAC 1 cut(s) 4660
Bst6I CTCTTC 6 cut(s) 1935, 2369, 2728, 3858, 4979, 5130
BstACI GRCGYC 2 cut(s) 298, 3883
BstAFI CTTAAG 1 cut(s) 1855
BstAPI GCANNNNNTGC 2 cut(s) 772, 4202
BstAUI TGTACA 2 cut(s) 3826, 5353
BstBAI YACGTR 3 cut(s) 4298, 4673, 5123
BstBI TTCGAA 1 cut(s) 1933
BstDSI CCRYGG 2 cut(s) 625, 2094
BstENI CCTNNNNNAGG 2 cut(s) 1080, 4562
BstFNI CGCG 3 cut(s) 24, 1709, 4906
BstH2I RGCGCY 3 cut(s) 301, 3886, 5315
BstHHI GCGC 6 cut(s) 300, 1854, 3620, 3885, 4906, 5314
BstMAI GTCTC 5 cut(s) 212, 789, 1400, 2691, 5177
BstNSI RCATGY 6 cut(s) 692, 1581, 1733, 2038, 3106, 4073
BstSFI CTRYAG 9 cut(s) 717, 773, 1532, 1692, 4113, 4344, 4603, 5076, 5183
BstSLI GKGCMC 3 cut(s) 1945, 2472, 5246
BstSNI TACGTA 2 cut(s) 4298, 5123
BstUI CGCG 3 cut(s) 24, 1709, 4906
BstV2I GAAGAC 7 cut(s) 659, 2397, 3583, 3595, 4031, 4980, 5385
BstX2I RGATCY 3 cut(s) 465, 1051, 4159
BstYI RGATCY 3 cut(s) 465, 1051, 4159
BstZ17I GTATAC 1 cut(s) 4660
Bsu36I CCTNAGG 2 cut(s) 292, 1236
BsuI GTATCC 3 cut(s) 1518, 1697, 2261
BtgI CCRYGG 2 cut(s) 625, 2094
BtgZI GCGATG 2 cut(s) 3010, 3475
BtrI CACGTC 2 cut(s) 4018, 5171
BtsI GCAGTG 4 cut(s) 86, 113, 3693, 5244
BveI ACCTGC 4 cut(s) 766, 3100, 3430, 4762
CaiI CAGNNNCTG 2 cut(s) 860, 4202
CciI TCATGA 5 cut(s) 916, 2668, 2761, 3534, 3741
CfoI GCGC 6 cut(s) 300, 1854, 3620, 3885, 4906, 5314
Cfr10I RCCGGY 2 cut(s) 739, 1319
Cfr13I GGNCC 8 cut(s) 167, 200, 1232, 1322, 2279, 3143, 3786, 4005
Cfr9I CCCGGG 1 cut(s) 2112
CseI GACGC 3 cut(s) 653, 1698, 3508
Csp6I GTAC 9 cut(s) 288, 525, 743, 1353, 2590, 3234, 3827, 4402, 5354
CspAI ACCGGT 2 cut(s) 739, 1319
CviQI GTAC 9 cut(s) 288, 525, 743, 1353, 2590, 3234, 3827, 4402, 5354
DinI GGCGCC 2 cut(s) 299, 3884
DraI TTTAAA 2 cut(s) 1983, 2511
DriI GACNNNNNGTC 1 cut(s) 3218
EaeI YGGCCR 4 cut(s) 36, 83, 148, 4251
Eam1104I CTCTTC 6 cut(s) 1935, 2369, 2728, 3858, 4979, 5130
Eam1105I GACNNNNNGTC 1 cut(s) 3218
EarI CTCTTC 6 cut(s) 1935, 2369, 2728, 3858, 4979, 5130
EciI GGCGGA 4 cut(s) 159, 272, 2076, 5005
Ecl136II GAGCTC 1 cut(s) 3403
Eco105I TACGTA 2 cut(s) 4298, 5123
Eco130I CCWWGG 4 cut(s) 252, 1511, 1946, 2094
Eco24I GRGCYC 4 cut(s) 3405, 3732, 3929, 4085
Eco31I GGTCTC 2 cut(s) 789, 2691
Eco47I GGWCC 5 cut(s) 167, 1232, 1322, 2279, 4005
Eco47III AGCGCT 1 cut(s) 5313
Eco53kI GAGCTC 1 cut(s) 3403
Eco72I CACGTG 1 cut(s) 4673
Eco81I CCTNAGG 2 cut(s) 292, 1236
Eco88I CYCGRG 1 cut(s) 2112
EcoICRI GAGCTC 1 cut(s) 3403
EcoNI CCTNNNNNAGG 2 cut(s) 1080, 4562
EcoO109I RGGNCCY 1 cut(s) 200
EcoRI GAATTC 3 cut(s) 1258, 5190, 5387
EcoT14I CCWWGG 4 cut(s) 252, 1511, 1946, 2094
EcoT22I ATGCAT 1 cut(s) 2435
EcoT38I GRGCYC 4 cut(s) 3405, 3732, 3929, 4085
EgeI GGCGCC 2 cut(s) 299, 3884
EheI GGCGCC 2 cut(s) 299, 3884
ErhI CCWWGG 4 cut(s) 252, 1511, 1946, 2094
Esp3I CGTCTC 1 cut(s) 5177
FalI AAGNNNNNCTT 8 cut(s) 1826, 1858, 1930, 1962, 3355, 3387, 4425, 4457
FaqI GGGAC 3 cut(s) 469, 2502, 4139
FauI CCCGC 3 cut(s) 698, 2772, 4491
FauNDI CATATG 1 cut(s) 4504
FbaI TGATCA 1 cut(s) 2665
FblI GTMKAC 1 cut(s) 4659
FriOI GRGCYC 4 cut(s) 3405, 3732, 3929, 4085
GlaI GCGC 6 cut(s) 299, 1853, 3619, 3884, 4905, 5313
GsaI CCCAGC 2 cut(s) 2875, 5024
GsuI CTGGAG 6 cut(s) 1985, 2057, 3716, 3920, 4818, 5159
HaeII RGCGCY 3 cut(s) 301, 3886, 5315
HapII CCGG 6 cut(s) 35, 740, 1320, 2113, 4760, 5259
HgaI GACGC 3 cut(s) 653, 1698, 3508
HhaI GCGC 6 cut(s) 300, 1854, 3620, 3885, 4906, 5314
Hin1I GRCGYC 2 cut(s) 298, 3883
Hin6I GCGC 6 cut(s) 298, 1852, 3618, 3883, 4904, 5312
HinP1I GCGC 6 cut(s) 298, 1852, 3618, 3883, 4904, 5312
HincII GTYRAC 6 cut(s) 1129, 2164, 2229, 4387, 5032, 5221
HindII GTYRAC 6 cut(s) 1129, 2164, 2229, 4387, 5032, 5221
HindIII AAGCTT 3 cut(s) 1338, 4120, 4130
HpaI GTTAAC 1 cut(s) 5032
HpaII CCGG 6 cut(s) 35, 740, 1320, 2113, 4760, 5259
HphI GGTGA 6 cut(s) 2399, 3149, 3884, 4634, 4700, 5273
Hpy99I CGWCG 3 cut(s) 178, 992, 4891
HpyCH4IV ACGT 7 cut(s) 1199, 2476, 4017, 4297, 4672, 5122, 5170
HpySE526I ACGT 7 cut(s) 1199, 2476, 4017, 4297, 4672, 5122, 5170
Hsp92I GRCGYC 2 cut(s) 298, 3883
HspAI GCGC 6 cut(s) 298, 1852, 3618, 3883, 4904, 5312
KasI GGCGCC 2 cut(s) 297, 3882
Kpn2I TCCGGA 1 cut(s) 4759
Ksp22I TGATCA 1 cut(s) 2665
KspAI GTTAAC 1 cut(s) 5032
LguI GCTCTTC 1 cut(s) 5130
MaeII ACGT 7 cut(s) 1199, 2476, 4017, 4297, 4672, 5122, 5170
MfeI CAATTG 1 cut(s) 2408
MflI RGATCY 3 cut(s) 465, 1051, 4159
MhlI GDGCHC 9 cut(s) 1945, 2472, 3084, 3405, 3732, 3929, 4085, 4294, 5246
MlsI TGGCCA 3 cut(s) 85, 150, 4253
MluI ACGCGT 1 cut(s) 1707
MluNI TGGCCA 3 cut(s) 85, 150, 4253
Mly113I GGCGCC 2 cut(s) 298, 3883
MlyI GAGTC 9 cut(s) 815, 1034, 1163, 2135, 2355, 3829, 4382, 4730, 4917
MmeI TCCRAC 3 cut(s) 1656, 1794, 2257
Mox20I TGGCCA 3 cut(s) 85, 150, 4253
Mph1103I ATGCAT 1 cut(s) 2435
MroI TCCGGA 1 cut(s) 4759
MroXI GAANNNNTTC 5 cut(s) 1442, 1841, 2394, 4443, 4876
MscI TGGCCA 3 cut(s) 85, 150, 4253
Msp20I TGGCCA 3 cut(s) 85, 150, 4253
MspA1I CMGCKG 3 cut(s) 4112, 4349, 4513
MspCI CTTAAG 1 cut(s) 1855
MspI CCGG 6 cut(s) 35, 740, 1320, 2113, 4760, 5259
MunI CAATTG 1 cut(s) 2408
Mva1269I GAATGC 3 cut(s) 3068, 4461, 5249
MvnI CGCG 3 cut(s) 24, 1709, 4906
NarI GGCGCC 2 cut(s) 298, 3883
NciI CCSGG 2 cut(s) 2113, 2114
NcoI CCATGG 1 cut(s) 2094
NdeI CATATG 1 cut(s) 4504
NsiI ATGCAT 1 cut(s) 2435
NspI RCATGY 6 cut(s) 692, 1581, 1733, 2038, 3106, 4073
NspV TTCGAA 1 cut(s) 1933
OliI CACNNNNGTG 3 cut(s) 1553, 4287, 4452
PaeI GCATGC 3 cut(s) 692, 1581, 3106
PagI TCATGA 5 cut(s) 916, 2668, 2761, 3534, 3741
PaqCI CACCTGC 1 cut(s) 766
PciSI GCTCTTC 1 cut(s) 5130
PctI GAATGC 3 cut(s) 3068, 4461, 5249
PdmI GAANNNNTTC 5 cut(s) 1442, 1841, 2394, 4443, 4876
PflMI CCANNNNNTGG 4 cut(s) 48, 123, 521, 1220
PfoI TCCNGGA 1 cut(s) 3335
PinAI ACCGGT 2 cut(s) 739, 1319
PleI GAGTC 9 cut(s) 814, 1034, 1163, 2134, 2355, 3829, 4382, 4729, 4916
PluTI GGCGCC 2 cut(s) 301, 3886
PmaCI CACGTG 1 cut(s) 4673
PmlI CACGTG 1 cut(s) 4673
PpsI GAGTC 9 cut(s) 814, 1034, 1163, 2134, 2355, 3829, 4382, 4729, 4916
Ppu21I YACGTR 3 cut(s) 4298, 4673, 5123
PsiI TTATAA 1 cut(s) 4488
Psp124BI GAGCTC 1 cut(s) 3405
Psp1406I AACGTT 1 cut(s) 2476
PspCI CACGTG 1 cut(s) 4673
PspFI CCCAGC 2 cut(s) 2871, 5020
PspPI GGNCC 8 cut(s) 167, 200, 1232, 1322, 2279, 3143, 3786, 4005
PstI CTGCAG 3 cut(s) 777, 4117, 4348
PstNI CAGNNNCTG 2 cut(s) 860, 4202
PsuI RGATCY 3 cut(s) 465, 1051, 4159
PvuII CAGCTG 3 cut(s) 4112, 4349, 4513
RsaI GTAC 9 cut(s) 289, 526, 744, 1354, 2591, 3235, 3828, 4403, 5355
RsaNI GTAC 9 cut(s) 288, 525, 743, 1353, 2590, 3234, 3827, 4402, 5354
SacI GAGCTC 1 cut(s) 3405
SapI GCTCTTC 1 cut(s) 5130
Sau96I GGNCC 8 cut(s) 167, 200, 1232, 1322, 2279, 3143, 3786, 4005
SchI GAGTC 9 cut(s) 815, 1034, 1163, 2135, 2355, 3829, 4382, 4730, 4917
SduI GDGCHC 9 cut(s) 1945, 2472, 3084, 3405, 3732, 3929, 4085, 4294, 5246
SfcI CTRYAG 9 cut(s) 717, 773, 1532, 1692, 4113, 4344, 4603, 5076, 5183
SfoI GGCGCC 2 cut(s) 299, 3884
SfuI TTCGAA 1 cut(s) 1933
SinI GGWCC 5 cut(s) 167, 1232, 1322, 2279, 4005
SmaI CCCGGG 1 cut(s) 2114
SnaBI TACGTA 2 cut(s) 4298, 5123
SpeI ACTAGT 1 cut(s) 505
SphI GCATGC 3 cut(s) 692, 1581, 3106
SspDI GGCGCC 2 cut(s) 297, 3882
SspI AATATT 2 cut(s) 610, 3384
SstI GAGCTC 1 cut(s) 3405
StyI CCWWGG 4 cut(s) 252, 1511, 1946, 2094
TaiI ACGT 7 cut(s) 1202, 2479, 4020, 4300, 4675, 5125, 5173
TatI WGTACW 2 cut(s) 3826, 5353
TauI GCSGC 3 cut(s) 24, 2792, 3479
TspGWI ACGGA 5 cut(s) 323, 976, 1340, 3519, 5339
TspMI CCCGGG 1 cut(s) 2112
Van91I CCANNNNNTGG 4 cut(s) 48, 123, 521, 1220
Vha464I CTTAAG 1 cut(s) 1855
VneI GTGCAC 3 cut(s) 1941, 2468, 5242
VpaK11BI GGWCC 5 cut(s) 167, 1232, 1322, 2279, 4005
XagI CCTNNNNNAGG 2 cut(s) 1080, 4562
XbaI TCTAGA 1 cut(s) 2902
XceI RCATGY 6 cut(s) 692, 1581, 1733, 2038, 3106, 4073
XcmI CCANNNNNNNNNTGG 1 cut(s) 393
XmaI CCCGGG 1 cut(s) 2112
XmiI GTMKAC 1 cut(s) 4659
XmnI GAANNNNTTC 5 cut(s) 1442, 1841, 2394, 4443, 4876
Zsp2I ATGCAT 1 cut(s) 2435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.