Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0001516

Physical Location & Seq

Genomic Coordinates Forward (+)

21005851 .. 21007218

Gene Structure 1368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g17820.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGCAAACAGCAAGGTTGAGGGTCATGCTGATCATTTCATTGTCTGAGTTGATGTCTGAAGTACAAGTGACTCAGATGAAAGCTTATGGAACACTAAAAGAGAGTGGTGAAGCACGGCGTCTTCGAAAGTCACTTGACGAAGTGGCAGATGAAGCTAAGGGCCCCAGTCAGTTGAGAGAGTGTAGAGTTCCTGACGGTGCTCTGTTAGAAATTCCAGAAAAAATGACAGAAAATAGATGGTCCTGGCCAGAAGTGAAATTTCTCGCTGACAGGCTTCTTCTTGCTCTTGATGCCAGCTTGGAACATGCACTCCTGGGCTCTTTGATAACTATGGATAGATATGCAGCTGCTGAAAGCTTCTATAGACTTGCTATGGCACTTGCCCCTGTCCCAGACCTTCACATAATGTGGTTACTGCATTTATGTGATGCACATCAGGAAATACAGTCTTGGGCTGAAGCTGCTCAGTGTGCTGTTGCTGTGGCAGGTATTGCCCTTGTTGCTAGAAATGATGGTGTTTGGAGCAAAGATCACATAACTGCTTTGCGTAAAATTTGTCCGATGGTCAGCATTGAGATCAGCTCTGAGACAACTGCAGCTGAGGTAGAGGGATATGGTGCATCAAAACTTACCGTTGACTCTGCTGTGAAGTACCTACAACTCGCAAATAAGTTGTTTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0006810 GO:0008064 GO:0008150 GO:0008360 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009958 GO:0009966 GO:0009987 GO:0010646 GO:0010928 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0017016 GO:0017048 GO:0019898 GO:0019899 GO:0022603 GO:0022604 GO:0023051 GO:0030832 GO:0031267 GO:0032535 GO:0032956 GO:0032970 GO:0033043 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051020 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0065007 GO:0065008 GO:0065009 GO:0070971 GO:0071840 GO:0071944 GO:0090066 GO:0098772 GO:0110053 GO:1902903

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DHR-2 DOCK-C2

Protein Analysis

228

Amino Acids

25.13

Weight (kDa)

5.45

Isoelectric Point (pI)

43.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16340 AT4G16340
fragaria_vesca	FvH4_3g14770 FvH4_3g14770 FvH4_3g14770
malus_domestica	MD05G1229900.v1.1 MD05G1233200.v1.1 MD10G1209700.v1.1
prunus_persica	Prupe.3G108400_v2.0.a1 Prupe.4G132800_v2.0.a1
pyrus_communis	pycom05g21080 pycom05g21090 pycom10g17800 pycom10g17820
rosa_chinensis	RchiOBHm_Chr1g0327621 RchiOBHm_Chr3g0473981 RchiOBHm_Chr5g0024291 RchiOBHm_Chr5g0024301 RchiOBHm_Chr5g0024371 RchiOBHm_Chr5g0024381
rosa_laevigata	RLG00000029979 RLG00000032795 RLG00000036969
rosa_multiflora	Rmu_co8048528.1_g000001 Rmu_co8378897.1_g000002 Rmu_sc0005861.1_g000003 Rmu_sc0015218.1_g000005 Rmu_ssc0000042.1_g000009
rosa_roxburghii	Rroxscaffold_1G00054850 Rroxscaffold_1G00054890 Rroxscaffold_1G00055790 Rroxscaffold_1G00055850 Rroxscaffold_4G00322510
rosa_rugosa	Rorug01G0068800 Rorug05G0083000 Rorug05G0083100
rosa_samantha	Rh3AG187600 Rh3BG216300 Rh3CG212800 Rh5AG173700 Rh5BG170500 Rh5BG170900 Rh5BG171900 Rh5BG172000 Rh5CG186800 Rh5CG187500 Rh5CG187600 Rh5DG173100
rosa_wichuraiana	Rw0G000890 Rw3G017190 Rw5G015680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	476
AcoI	YGGCCR	1 cut(s)	245
AcsI	RAATTY	3 cut(s)	210, 257, 552
AcuI	CTGAAG	2 cut(s)	78, 477
AcyI	GRCGYC	1 cut(s)	118
AfaI	GTAC	2 cut(s)	63, 653
AjnI	CCWGG	2 cut(s)	242, 312
AloI	GAACNNNNNNTCC	2 cut(s)	294, 326
AluBI	AGCT	8 cut(s)	83, 155, 297, 347, 357, 461, 582, 599
AluI	AGCT	8 cut(s)	83, 155, 297, 347, 357, 461, 582, 599
Alw21I	GWGCWC	1 cut(s)	202
Alw26I	GTCTC	1 cut(s)	581
AlwNI	CAGNNNCTG	1 cut(s)	350
AoxI	GGCC	2 cut(s)	160, 245
ApaI	GGGCCC	1 cut(s)	164
ApeKI	GCWGC	4 cut(s)	344, 347, 461, 596
ApoI	RAATTY	3 cut(s)	210, 257, 552
AspS9I	GGNCC	3 cut(s)	160, 161, 240
AsuHPI	GGTGA	1 cut(s)	119
AsuII	TTCGAA	1 cut(s)	124
AvaII	GGWCC	1 cut(s)	240
BaeGI	GKGCMC	1 cut(s)	164
BalI	TGGCCA	1 cut(s)	247
BanII	GRGCYC	2 cut(s)	164, 320
BbsI	GAAGAC	1 cut(s)	113
Bbv12I	GWGCWC	1 cut(s)	202
BbvCI	CCTCAGC	1 cut(s)	600
BbvI	GCAGC	4 cut(s)	334, 356, 448, 608
BccI	CCATC	3 cut(s)	231, 506, 556
BceAI	ACGGC	1 cut(s)	131
BciT130I	CCWGG	2 cut(s)	244, 314
BclI	TGATCA	1 cut(s)	30
BcoDI	GTCTC	1 cut(s)	581
BfaI	CTAG	1 cut(s)	504
BfmI	CTRYAG	2 cut(s)	361, 594
BfuAI	ACCTGC	1 cut(s)	476
BisI	GCNGC	4 cut(s)	345, 348, 462, 597
BlsI	GCNGC	4 cut(s)	346, 349, 463, 598
Bme1390I	CCNGG	2 cut(s)	244, 314
Bme18I	GGWCC	1 cut(s)	240
BmgT120I	GGNCC	3 cut(s)	160, 161, 240
BmiI	GGNNCC	2 cut(s)	162, 163
BmrFI	CCNGG	2 cut(s)	244, 314
BmrI	ACTGGG	1 cut(s)	159
BmsI	GCATC	3 cut(s)	280, 418, 629
BmuI	ACTGGG	1 cut(s)	159
BpiI	GAAGAC	1 cut(s)	113
BplI	GAGNNNNNCTC	2 cut(s)	566, 598
Bpu10I	CCTNAGC	2 cut(s)	156, 600
Bpu14I	TTCGAA	1 cut(s)	124
BsaBI	GATNNNNATC	1 cut(s)	432
BsaHI	GRCGYC	1 cut(s)	118
BsaJI	CCNNGG	1 cut(s)	313
BsaXI	ACNNNNNCTCC	2 cut(s)	294, 324
Bse1I	ACTGG	1 cut(s)	165
Bse8I	GATNNNNATC	1 cut(s)	432
BseBI	CCWGG	2 cut(s)	244, 314
BseDI	CCNNGG	1 cut(s)	313
BseJI	GATNNNNATC	1 cut(s)	432
BseMII	CTCAG	5 cut(s)	36, 86, 479, 576, 591
BseNI	ACTGG	1 cut(s)	165
BseSI	GKGCMC	1 cut(s)	164
BseXI	GCAGC	4 cut(s)	334, 356, 448, 608
BshFI	GGCC	2 cut(s)	162, 247
BsiHKAI	GWGCWC	1 cut(s)	202
BslFI	GGGAC	1 cut(s)	374
BsmAI	GTCTC	1 cut(s)	581
BsmFI	GGGAC	1 cut(s)	374
BsnI	GGCC	2 cut(s)	162, 247
Bsp119I	TTCGAA	1 cut(s)	124
Bsp120I	GGGCCC	1 cut(s)	160
Bsp1286I	GDGCHC	3 cut(s)	164, 202, 320
Bsp143I	GATC	3 cut(s)	30, 529, 576
BspANI	GGCC	2 cut(s)	162, 247
BspCNI	CTCAG	5 cut(s)	37, 85, 478, 577, 592
BspLI	GGNNCC	2 cut(s)	162, 163
BspMAI	CTGCAG	1 cut(s)	598
BspMI	ACCTGC	1 cut(s)	476
BspT104I	TTCGAA	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	165
BssECI	CCNNGG	1 cut(s)	313
BssMI	GATC	3 cut(s)	30, 529, 576
BssNI	GRCGYC	1 cut(s)	118
Bst2UI	CCWGG	2 cut(s)	244, 314
Bst4CI	ACNGT	3 cut(s)	197, 447, 634
BstACI	GRCGYC	1 cut(s)	118
BstAPI	GCANNNNNTGC	1 cut(s)	491
BstBI	TTCGAA	1 cut(s)	124
BstC8I	GCNNGC	1 cut(s)	295
BstDEI	CTNAG	6 cut(s)	45, 72, 156, 465, 585, 600
BstKTI	GATC	3 cut(s)	33, 532, 579
BstMAI	GTCTC	1 cut(s)	581
BstMBI	GATC	3 cut(s)	30, 529, 576
BstMWI	GCNNNNNNNGC	6 cut(s)	152, 290, 461, 470, 491, 500
BstNI	CCWGG	2 cut(s)	244, 314
BstNSI	RCATGY	1 cut(s)	308
BstSCI	CCNGG	2 cut(s)	242, 312
BstSFI	CTRYAG	2 cut(s)	361, 594
BstSLI	GKGCMC	1 cut(s)	164
BstV1I	GCAGC	4 cut(s)	334, 356, 448, 608
BstV2I	GAAGAC	1 cut(s)	113
BsuRI	GGCC	2 cut(s)	162, 247
BtsIMutI	CAGTG	1 cut(s)	473
BveI	ACCTGC	1 cut(s)	476
Cac8I	GCNNGC	1 cut(s)	295
CaiI	CAGNNNCTG	1 cut(s)	350
Cfr13I	GGNCC	3 cut(s)	160, 161, 240
CseI	GACGC	1 cut(s)	107
Csp6I	GTAC	2 cut(s)	62, 652
CviAII	CATG	2 cut(s)	25, 305
CviQI	GTAC	2 cut(s)	62, 652
DdeI	CTNAG	6 cut(s)	45, 72, 156, 465, 585, 600
DpnI	GATC	3 cut(s)	32, 531, 578
DpnII	GATC	3 cut(s)	30, 529, 576
EaeI	YGGCCR	1 cut(s)	245
Eco24I	GRGCYC	2 cut(s)	164, 320
Eco47I	GGWCC	1 cut(s)	240
Eco57I	CTGAAG	2 cut(s)	78, 477
EcoO109I	RGGNCCY	2 cut(s)	160, 161
EcoRII	CCWGG	2 cut(s)	242, 312
EcoT38I	GRGCYC	2 cut(s)	164, 320
FaeI	CATG	2 cut(s)	28, 308
FaqI	GGGAC	1 cut(s)	374
FatI	CATG	2 cut(s)	24, 304
FbaI	TGATCA	1 cut(s)	30
Fnu4HI	GCNGC	4 cut(s)	345, 348, 462, 597
FriOI	GRGCYC	2 cut(s)	164, 320
Fsp4HI	GCNGC	4 cut(s)	345, 348, 462, 597
FspBI	CTAG	1 cut(s)	504
GluI	GCNGC	4 cut(s)	345, 348, 462, 597
HaeIII	GGCC	2 cut(s)	162, 247
HgaI	GACGC	1 cut(s)	107
Hin1I	GRCGYC	1 cut(s)	118
Hin1II	CATG	2 cut(s)	28, 308
HincII	GTYRAC	1 cut(s)	637
HindII	GTYRAC	1 cut(s)	637
HindIII	AAGCTT	2 cut(s)	81, 355
HinfI	GANTC	2 cut(s)	70, 638
HphI	GGTGA	1 cut(s)	119
Hpy166II	GTNNAC	1 cut(s)	637
Hpy188I	TCNGA	5 cut(s)	46, 58, 75, 561, 586
Hpy188III	TCNNGA	4 cut(s)	191, 215, 287, 437
Hpy8I	GTNNAC	1 cut(s)	637
HpyAV	CCTTC	1 cut(s)	407
HpyCH4III	ACNGT	3 cut(s)	197, 447, 634
HpyCH4V	TGCA	7 cut(s)	4, 308, 344, 418, 431, 596, 620
HpyF10VI	GCNNNNNNNGC	6 cut(s)	152, 290, 461, 470, 491, 500
HpyF3I	CTNAG	6 cut(s)	45, 72, 156, 465, 585, 600
Hsp92I	GRCGYC	1 cut(s)	118
Hsp92II	CATG	2 cut(s)	28, 308
Ksp22I	TGATCA	1 cut(s)	30
Kzo9I	GATC	3 cut(s)	30, 529, 576
LmnI	GCTCC	1 cut(s)	522
Lsp1109I	GCAGC	4 cut(s)	334, 356, 448, 608
LweI	GCATC	3 cut(s)	280, 418, 629
MaeI	CTAG	1 cut(s)	504
MaeIII	GTNAC	3 cut(s)	67, 129, 411
MalI	GATC	3 cut(s)	32, 531, 578
MboI	GATC	3 cut(s)	30, 529, 576
MboII	GAAGA	2 cut(s)	113, 269
MhlI	GDGCHC	3 cut(s)	164, 202, 320
MlsI	TGGCCA	1 cut(s)	247
MluCI	AATT	3 cut(s)	210, 257, 552
MluNI	TGGCCA	1 cut(s)	247
MlyI	GAGTC	2 cut(s)	64, 632
MnlI	CCTC	3 cut(s)	12, 595, 601
Mox20I	TGGCCA	1 cut(s)	247
MscI	TGGCCA	1 cut(s)	247
MseI	TTAA	1 cut(s)	682
MslI	CAYNNNNRTG	1 cut(s)	423
Msp20I	TGGCCA	1 cut(s)	247
MspA1I	CMGCKG	2 cut(s)	347, 599
MspR9I	CCNGG	2 cut(s)	244, 314
MvaI	CCWGG	2 cut(s)	244, 314
MwoI	GCNNNNNNNGC	6 cut(s)	152, 290, 461, 470, 491, 500
NdeII	GATC	3 cut(s)	30, 529, 576
NlaIII	CATG	2 cut(s)	28, 308
NlaIV	GGNNCC	2 cut(s)	162, 163
NmuCI	GTSAC	2 cut(s)	67, 129
NspI	RCATGY	1 cut(s)	308
NspV	TTCGAA	1 cut(s)	124
PcsI	WCGNNNNNNNCGW	1 cut(s)	121
PkrI	GCNGC	4 cut(s)	346, 349, 463, 598
PleI	GAGTC	2 cut(s)	64, 632
PpsI	GAGTC	2 cut(s)	64, 632
Psp6I	CCWGG	2 cut(s)	242, 312
PspGI	CCWGG	2 cut(s)	242, 312
PspN4I	GGNNCC	2 cut(s)	162, 163
PspOMI	GGGCCC	1 cut(s)	160
PspPI	GGNCC	3 cut(s)	160, 161, 240
PstI	CTGCAG	1 cut(s)	598
PstNI	CAGNNNCTG	1 cut(s)	350
PvuII	CAGCTG	2 cut(s)	347, 599
RsaI	GTAC	2 cut(s)	63, 653
RsaNI	GTAC	2 cut(s)	62, 652
RseI	CAYNNNNRTG	1 cut(s)	423
SaqAI	TTAA	1 cut(s)	682
SatI	GCNGC	4 cut(s)	345, 348, 462, 597
Sau3AI	GATC	3 cut(s)	30, 529, 576
Sau96I	GGNCC	3 cut(s)	160, 161, 240
SchI	GAGTC	2 cut(s)	64, 632
ScrFI	CCNGG	2 cut(s)	244, 314
SduI	GDGCHC	3 cut(s)	164, 202, 320
SfaNI	GCATC	3 cut(s)	280, 418, 629
SfcI	CTRYAG	2 cut(s)	361, 594
SfuI	TTCGAA	1 cut(s)	124
SinI	GGWCC	1 cut(s)	240
SmiMI	CAYNNNNRTG	1 cut(s)	423
Sse9I	AATT	3 cut(s)	210, 257, 552
SspMI	CTAG	1 cut(s)	504
StyD4I	CCNGG	2 cut(s)	242, 312
TaaI	ACNGT	3 cut(s)	197, 447, 634
TaqI	TCGA	1 cut(s)	124
TasI	AATT	3 cut(s)	210, 257, 552
TatI	WGTACW	1 cut(s)	61
Tru1I	TTAA	1 cut(s)	682
Tru9I	TTAA	1 cut(s)	682
TscAI	CASTG	1 cut(s)	473
TseFI	GTSAC	2 cut(s)	67, 129
TseI	GCWGC	4 cut(s)	344, 347, 461, 596
Tsp45I	GTSAC	2 cut(s)	67, 129
TspDTI	ATGAA	3 cut(s)	27, 92, 165
TspRI	CASTG	1 cut(s)	473
VpaK11BI	GGWCC	1 cut(s)	240
XapI	RAATTY	3 cut(s)	210, 257, 552
XceI	RCATGY	1 cut(s)	308
XspI	CTAG	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.