Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001516

Physical Location & Seq

Genomic Coordinates Forward (+)

18474642 .. 18477105

Gene Structure 2464 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30405

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGCTCAGCCTCCGCCCTCGCCGCGATTCTACTCCGGCCACCACCAAATGGCACAACAAGTTTGATGAGAATTTGGAGCAGTGGCCACATCTGAAGGAGCTGGTGCAGTGTTACACTACAGACTGGGTTAAGGATGACAACAAGTATGGCCATTACGAGAGTGTTGGTCCGCCGTCGTTTCAGAACCAGATTTATGAGGGGCCTGACACTGATATTGAGACTGAAATGCACCTTGCTGGTGCAAGGCGAACCAAGGCGGATGATACCACTGATGATGATTTACCAAGTACCTCAGGGCGCCAATTTACGGATGCAATAGCATCTGATTCAGCACACTCCAATGATCCAAAGCATTTTGGTCAATCTCCTCTCCCTGCTTATGAACCAGCTTTTGATTGGGAAAATGAAAGATCATTGATATGTGGTCAAAGGGTTCCAGAAACTCCAATATCTCATGGCCTGAAGATCTCAGTGAAAGTTCTGTCCCTATCATTTCAAGCTGGACTAGTTGGTGAGTGTTATGTTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0006810 GO:0008064 GO:0008150 GO:0008360 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009958 GO:0009966 GO:0009987 GO:0010646 GO:0010928 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0017016 GO:0017048 GO:0019898 GO:0019899 GO:0022603 GO:0022604 GO:0023051 GO:0030832 GO:0031267 GO:0032535 GO:0032956 GO:0032970 GO:0033043 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051020 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0065007 GO:0065008 GO:0065009 GO:0070971 GO:0071840 GO:0071944 GO:0090066 GO:0098772 GO:0110053 GO:1902903

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DHR-2 DOCK-C2

Protein Analysis

176

Amino Acids

19.91

Weight (kDa)

4.96

Isoelectric Point (pI)

49.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16340 AT4G16340
fragaria_vesca	FvH4_3g14770 FvH4_3g14770 FvH4_3g14770
malus_domestica	MD05G1229900.v1.1 MD05G1233200.v1.1 MD10G1209700.v1.1
prunus_persica	Prupe.3G108400_v2.0.a1 Prupe.4G132800_v2.0.a1
pyrus_communis	pycom05g21080 pycom05g21090 pycom10g17800 pycom10g17820
rosa_chinensis	RchiOBHm_Chr1g0327621 RchiOBHm_Chr3g0473981 RchiOBHm_Chr5g0024291 RchiOBHm_Chr5g0024301 RchiOBHm_Chr5g0024371 RchiOBHm_Chr5g0024381
rosa_laevigata	RLG00000029979 RLG00000032795 RLG00000036969
rosa_multiflora	Rmu_co8048528.1_g000001 Rmu_co8378897.1_g000002 Rmu_sc0005861.1_g000003 Rmu_sc0015218.1_g000005 Rmu_ssc0000042.1_g000009
rosa_roxburghii	Rroxscaffold_1G00054850 Rroxscaffold_1G00054890 Rroxscaffold_1G00055790 Rroxscaffold_1G00055850 Rroxscaffold_4G00322510
rosa_rugosa	Rorug01G0068800 Rorug05G0083000 Rorug05G0083100
rosa_samantha	Rh3AG187600 Rh3BG216300 Rh3CG212800 Rh5AG173700 Rh5BG170500 Rh5BG170900 Rh5BG171900 Rh5BG172000 Rh5CG186800 Rh5CG187500 Rh5CG187600 Rh5DG173100
rosa_wichuraiana	Rw0G000890 Rw3G017190 Rw5G015680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	297
AccB7I	CCANNNNNTGG	1 cut(s)	48
AccII	CGCG	1 cut(s)	24
AciI	CCGC	4 cut(s)	13, 22, 170, 257
AclWI	GGATC	1 cut(s)	338
AcoI	YGGCCR	3 cut(s)	36, 83, 148
AcsI	RAATTY	1 cut(s)	70
AcuI	CTGAAG	2 cut(s)	113, 482
AcyI	GRCGYC	1 cut(s)	298
AfaI	GTAC	1 cut(s)	289
AfiI	CCNNNNNNNGG	2 cut(s)	48, 307
AgsI	TTSAA	1 cut(s)	497
AhlI	ACTAGT	1 cut(s)	505
AluBI	AGCT	3 cut(s)	100, 389, 500
AluI	AGCT	3 cut(s)	100, 389, 500
Alw26I	GTCTC	1 cut(s)	212
AlwI	GGATC	1 cut(s)	338
AoxI	GGCC	5 cut(s)	36, 83, 148, 200, 457
ApoI	RAATTY	1 cut(s)	70
AspLEI	GCGC	1 cut(s)	300
AspS9I	GGNCC	2 cut(s)	167, 200
AsuHPI	GGTGA	1 cut(s)	524
AvaII	GGWCC	1 cut(s)	167
AxyI	CCTNAGG	1 cut(s)	292
BalI	TGGCCA	2 cut(s)	85, 150
BanI	GGYRCC	1 cut(s)	297
BceAI	ACGGC	1 cut(s)	157
BcoDI	GTCTC	1 cut(s)	212
BcuI	ACTAGT	1 cut(s)	505
BfaI	CTAG	1 cut(s)	506
BfmI	CTRYAG	1 cut(s)	117
BfoI	RGCGCY	1 cut(s)	301
BglII	AGATCT	1 cut(s)	465
BisI	GCNGC	1 cut(s)	22
BlpI	GCTNAGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	23
Bme18I	GGWCC	1 cut(s)	167
BmgT120I	GGNCC	2 cut(s)	167, 200
BmiI	GGNNCC	3 cut(s)	201, 299, 435
BmrI	ACTGGG	1 cut(s)	133
BmsI	GCATC	2 cut(s)	301, 329
BmuI	ACTGGG	1 cut(s)	133
Bpu1102I	GCTNAGC	1 cut(s)	5
BsaHI	GRCGYC	1 cut(s)	298
BsaJI	CCNNGG	1 cut(s)	252
Bsc4I	CCNNNNNNNGG	2 cut(s)	48, 307
Bse1I	ACTGG	1 cut(s)	128
Bse21I	CCTNAGG	1 cut(s)	292
BseDI	CCNNGG	1 cut(s)	252
BseGI	GGATG	3 cut(s)	139, 265, 316
BseLI	CCNNNNNNNGG	2 cut(s)	48, 307
BseMII	CTCAG	3 cut(s)	19, 306, 483
BseNI	ACTGG	1 cut(s)	128
BseRI	GAGGAG	1 cut(s)	357
BsgI	GTGCAG	1 cut(s)	125
Bsh1236I	CGCG	1 cut(s)	24
BshFI	GGCC	5 cut(s)	38, 85, 150, 202, 459
BshNI	GGYRCC	1 cut(s)	297
BsiSI	CCGG	1 cut(s)	35
BslFI	GGGAC	1 cut(s)	469
BslI	CCNNNNNNNGG	2 cut(s)	48, 307
BsmAI	GTCTC	1 cut(s)	212
BsmFI	GGGAC	1 cut(s)	469
BsnI	GGCC	5 cut(s)	38, 85, 150, 202, 459
Bsp143I	GATC	3 cut(s)	343, 410, 465
Bsp1720I	GCTNAGC	1 cut(s)	5
BspACI	CCGC	4 cut(s)	13, 22, 170, 257
BspANI	GGCC	5 cut(s)	38, 85, 150, 202, 459
BspCNI	CTCAG	3 cut(s)	18, 305, 482
BspFNI	CGCG	1 cut(s)	24
BspLI	GGNNCC	3 cut(s)	201, 299, 435
BspPI	GGATC	1 cut(s)	338
BspT107I	GGYRCC	1 cut(s)	297
BsrI	ACTGG	1 cut(s)	128
BssECI	CCNNGG	1 cut(s)	252
BssMI	GATC	3 cut(s)	343, 410, 465
BssNI	GRCGYC	1 cut(s)	298
BssT1I	CCWWGG	1 cut(s)	252
BstACI	GRCGYC	1 cut(s)	298
BstDEI	CTNAG	3 cut(s)	5, 292, 469
BstF5I	GGATG	3 cut(s)	139, 265, 316
BstFNI	CGCG	1 cut(s)	24
BstH2I	RGCGCY	1 cut(s)	301
BstHHI	GCGC	1 cut(s)	300
BstKTI	GATC	3 cut(s)	346, 413, 468
BstMAI	GTCTC	1 cut(s)	212
BstMBI	GATC	3 cut(s)	343, 410, 465
BstMWI	GCNNNNNNNGC	1 cut(s)	21
BstSFI	CTRYAG	1 cut(s)	117
BstUI	CGCG	1 cut(s)	24
BstX2I	RGATCY	1 cut(s)	465
BstYI	RGATCY	1 cut(s)	465
Bsu36I	CCTNAGG	1 cut(s)	292
BsuRI	GGCC	5 cut(s)	38, 85, 150, 202, 459
BtsCI	GGATG	3 cut(s)	139, 265, 316
BtsI	GCAGTG	2 cut(s)	86, 113
BtsIMutI	CAGTG	5 cut(s)	86, 113, 207, 267, 477
CfoI	GCGC	1 cut(s)	300
Cfr13I	GGNCC	2 cut(s)	167, 200
Csp6I	GTAC	1 cut(s)	288
CviAII	CATG	1 cut(s)	455
CviJI	RGCY	9 cut(s)	9, 38, 85, 100, 150, 202, 389, 459, 500
CviKI_1	RGCY	9 cut(s)	9, 38, 85, 100, 150, 202, 389, 459, 500
CviQI	GTAC	1 cut(s)	288
DdeI	CTNAG	3 cut(s)	5, 292, 469
DinI	GGCGCC	1 cut(s)	299
DpnI	GATC	3 cut(s)	345, 412, 467
DpnII	GATC	3 cut(s)	343, 410, 465
EaeI	YGGCCR	3 cut(s)	36, 83, 148
EciI	GGCGGA	2 cut(s)	159, 272
Eco130I	CCWWGG	1 cut(s)	252
Eco47I	GGWCC	1 cut(s)	167
Eco57I	CTGAAG	2 cut(s)	113, 482
Eco81I	CCTNAGG	1 cut(s)	292
EcoO109I	RGGNCCY	1 cut(s)	200
EcoT14I	CCWWGG	1 cut(s)	252
EgeI	GGCGCC	1 cut(s)	299
EheI	GGCGCC	1 cut(s)	299
ErhI	CCWWGG	1 cut(s)	252
FaeI	CATG	1 cut(s)	458
FaiI	YATR	6 cut(s)	147, 195, 381, 421, 456, 522
FaqI	GGGAC	1 cut(s)	469
FatI	CATG	1 cut(s)	454
Fnu4HI	GCNGC	1 cut(s)	22
FokI	GGATG	3 cut(s)	146, 272, 323
Fsp4HI	GCNGC	1 cut(s)	22
FspBI	CTAG	1 cut(s)	506
GlaI	GCGC	1 cut(s)	299
GluI	GCNGC	1 cut(s)	22
HaeII	RGCGCY	1 cut(s)	301
HaeIII	GGCC	5 cut(s)	38, 85, 150, 202, 459
HapII	CCGG	1 cut(s)	35
HhaI	GCGC	1 cut(s)	300
Hin1I	GRCGYC	1 cut(s)	298
Hin1II	CATG	1 cut(s)	458
Hin6I	GCGC	1 cut(s)	298
HinP1I	GCGC	1 cut(s)	298
HinfI	GANTC	2 cut(s)	26, 326
HpaII	CCGG	1 cut(s)	35
HphI	GGTGA	1 cut(s)	524
Hpy188I	TCNGA	3 cut(s)	93, 183, 325
Hpy188III	TCNNGA	1 cut(s)	437
Hpy99I	CGWCG	1 cut(s)	178
HpyAV	CCTTC	1 cut(s)	88
HpyCH4V	TGCA	4 cut(s)	106, 229, 242, 314
HpyF10VI	GCNNNNNNNGC	1 cut(s)	21
HpyF3I	CTNAG	3 cut(s)	5, 292, 469
Hsp92I	GRCGYC	1 cut(s)	298
Hsp92II	CATG	1 cut(s)	458
HspAI	GCGC	1 cut(s)	298
KasI	GGCGCC	1 cut(s)	297
Kzo9I	GATC	3 cut(s)	343, 410, 465
LmnI	GCTCC	2 cut(s)	76, 97
LweI	GCATC	2 cut(s)	301, 329
MaeI	CTAG	1 cut(s)	506
MaeIII	GTNAC	1 cut(s)	110
MalI	GATC	3 cut(s)	345, 412, 467
MboI	GATC	3 cut(s)	343, 410, 465
MboII	GAAGA	1 cut(s)	475
MflI	RGATCY	1 cut(s)	465
MlsI	TGGCCA	2 cut(s)	85, 150
MluCI	AATT	2 cut(s)	70, 302
MluNI	TGGCCA	2 cut(s)	85, 150
Mly113I	GGCGCC	1 cut(s)	298
MnlI	CCTC	5 cut(s)	20, 27, 190, 301, 378
Mox20I	TGGCCA	2 cut(s)	85, 150
MscI	TGGCCA	2 cut(s)	85, 150
MseI	TTAA	2 cut(s)	129, 529
MslI	CAYNNNNRTG	2 cut(s)	339, 418
Msp20I	TGGCCA	2 cut(s)	85, 150
MspI	CCGG	1 cut(s)	35
MvnI	CGCG	1 cut(s)	24
MwoI	GCNNNNNNNGC	1 cut(s)	21
NarI	GGCGCC	1 cut(s)	298
NdeII	GATC	3 cut(s)	343, 410, 465
NlaIII	CATG	1 cut(s)	458
NlaIV	GGNNCC	3 cut(s)	201, 299, 435
PfeI	GAWTC	2 cut(s)	26, 326
PflMI	CCANNNNNTGG	1 cut(s)	48
PkrI	GCNGC	1 cut(s)	23
PluTI	GGCGCC	1 cut(s)	301
PspN4I	GGNNCC	3 cut(s)	201, 299, 435
PspPI	GGNCC	2 cut(s)	167, 200
PsuI	RGATCY	1 cut(s)	465
RsaI	GTAC	1 cut(s)	289
RsaNI	GTAC	1 cut(s)	288
RseI	CAYNNNNRTG	2 cut(s)	339, 418
SaqAI	TTAA	2 cut(s)	129, 529
SatI	GCNGC	1 cut(s)	22
Sau3AI	GATC	3 cut(s)	343, 410, 465
Sau96I	GGNCC	2 cut(s)	167, 200
SetI	ASST	5 cut(s)	102, 234, 293, 391, 502
SfaNI	GCATC	2 cut(s)	301, 329
SfcI	CTRYAG	1 cut(s)	117
SfoI	GGCGCC	1 cut(s)	299
SinI	GGWCC	1 cut(s)	167
SmiMI	CAYNNNNRTG	2 cut(s)	339, 418
SpeI	ACTAGT	1 cut(s)	505
Sse9I	AATT	2 cut(s)	70, 302
SsiI	CCGC	4 cut(s)	13, 22, 170, 257
SspDI	GGCGCC	1 cut(s)	297
SspMI	CTAG	1 cut(s)	506
StyI	CCWWGG	1 cut(s)	252
TasI	AATT	2 cut(s)	70, 302
TauI	GCSGC	1 cut(s)	24
TfiI	GAWTC	2 cut(s)	26, 326
Tru1I	TTAA	2 cut(s)	129, 529
Tru9I	TTAA	2 cut(s)	129, 529
TscAI	CASTG	5 cut(s)	86, 113, 214, 274, 477
TspDTI	ATGAA	2 cut(s)	396, 420
TspGWI	ACGGA	1 cut(s)	323
TspRI	CASTG	5 cut(s)	86, 113, 214, 274, 477
Van91I	CCANNNNNTGG	1 cut(s)	48
VpaK11BI	GGWCC	1 cut(s)	167
XapI	RAATTY	1 cut(s)	70
XcmI	CCANNNNNNNNNTGG	1 cut(s)	393
XspI	CTAG	1 cut(s)	506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.