Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001516

Physical Location & Seq

Genomic Coordinates Forward (+)

17924177 .. 17930008

Gene Structure 5832 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG170900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1971 bp

ATGGTCGCCACTTCTCTCGACACCAGAGAGTCATTGAGGGAGAAGTATTCAAAGGCTATGAGCAATGTGATGGAATTGGAGAACAGGGGATGCAGAGTACTTCATGAAGTGGATGTGCACAGAATGAGCCAACACCCTTTTCTGAGTTGTATTCGGTTTGATCGAATAATCTACAATTTTCCTCATGCCGGTTACTTGCACGGTCAATCATCATCCGAGCACAACCAGTTTCAAATTTGGTTCCATCAGGATTTGGTGAGGGGATTCTTCAAGAATGGGCGTGAAATGCTTACCGAAATAGGAGAAATTCATGTGACACACAAGACAACATATCCTTTCAGTAGATGGGAAATAGTGAAGTTAGCAGAAGAGGTTGGGTTGTATTTGCTTCAGGAAGAAAAATTCTCAAAATGGGATTATCCAGGTTATGAAAACAAGAGAGGAGCTGGGTTATGTGATCAAACTTTTCCTGTTGGAGAATGTAGCACCTTCAAATTTGCCAAGCTATTGTACCATTCTACCCCTTCCAGTTACTACATTGACTTGGTTCGGGCTTACGGTCGGGATTCTCGAATTAACGGTCCTTACATGCACCACTGTTTAATACACCCGATGGGCAAATTGACCAAGCAATTCCTTCCAAATGAAAAACTTAACTCTGACTCTTTGATGACTATGGATAGATATGCAGCTGCAGAAAGCTTCTATAAGCTTGCTATGGCATTTGCCCCTGTCCCAGATCTTCATATAATGTGGTTACTTCATTTATGTGATGCACATCAAGATATGCAGTCGTGGGCAGAATCTGCTCAGTGTGCTGTCGCTGTGGCTGGTATTGTAATGCAGGCTTTGGTGGCCAGAAATGATGGTGTTTGGAGCAAAGATCTCATAACTGCTCTACGTAAAATTTGTCCAATGGTCAGTAGTGAGATCAGCTCTGAGGCTGCTGCAGCTGAGGTAGAGGGATATGGTGCATCAAAACTTACTGTTGACTCTGCCGTGAAGTACCTACAACTCGCAAATAAGCTCTTTTCTCAAGCTGAACTTTTTCATTTCTGTGCAAGCATTCTGAAACTTGTTATTCCAGTTTATAAAAGCAGGCGGGCATATGGACAGCTGAGCAAATGTCACACAATGCTTACTAATATATATGAATCAATCCTTGAGCAGGAATCAAGCCCAATTCCATTCACTGATGCAACATACTATAGGGTAGGGTTTTATGGTGATAGATTTGGAAAATTAGACAGAAGGGAATATGTATACAGGGAGCCACGTGATGTAAGACCAGGTGACATAATGGAGAAACTTAGCCATAGCTACGAGTCTAGTATGGATGGAAATCACGCCTTACACATCATTCCGGATTCTAGGCAGGTAAAGGCAGATGAGTTGCAGTCTGGAGTATGCTATTTTCAGATAACTGCTGTTGATCCAGTCATGGAAGATGAAGATTTGGAAAGCAGAAGGAAGAGAATCTTTTCTCTTGCGACAGGAAGTGTTCGTGTGCGAGTCTTTGACCGCTTTTTGTTTGATACACCTTTTACGAAAAATGGAAAAACTCAAGGTGGATTGGAAGACCAGTGGAAGAGGCGGACTGTTCTTCAGACTGAAGGTTCATTCCCAGCTCTTGTTAACAGGCTTGTAGTTACTATATCCGAATCGCTTGAGTTCTCCCCTGTAGAAAATGCCATTGGAATGATTGAAACTTGGACGGCTGCTCTACGTAATGAACTTGAAGAGCCTCGCAGTTCTGAGGGGGATCAACTCCCACGTCTCCAGAGCCGGCAGAGAATTCTTCAAGGAAGTATTGCAGTTCAGGTCAACAGTGGTGTTCTAAGTGTGTGCACTGCATTCCTTTCTGGTGAGCCTGCCACACGGTTGCGGTCACAAGAATTGCAGCAACTCATTGCGGCTCTCCTTGATTTATGGCTGTATGCAAGCGTGCCATCCATGTACACTTCAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0006810 GO:0008064 GO:0008150 GO:0008360 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009958 GO:0009966 GO:0009987 GO:0010646 GO:0010928 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0017016 GO:0017048 GO:0019898 GO:0019899 GO:0022603 GO:0022604 GO:0023051 GO:0030832 GO:0031267 GO:0032535 GO:0032956 GO:0032970 GO:0033043 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051020 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0065007 GO:0065008 GO:0065009 GO:0070971 GO:0071840 GO:0071944 GO:0090066 GO:0098772 GO:0110053 GO:1902903

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DHR-2 DOCK-C2

Protein Analysis

656

Amino Acids

74.78

Weight (kDa)

6.26

Isoelectric Point (pI)

53.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BMT5-like	PF10354	1 - 147	3.3e-42	rRNA (uridine-N3-)-methyltransferase BTM5-like
DHR-2_Lobe_A	PF06920	236 - 389	6.7e-36	DHR-2, Lobe A
DHR-2_Lobe_B	PF20422	457 - 539	7.9e-23	DHR-2, Lobe B
DHR-2_Lobe_C	PF20421	588 - 642	3.2e-09	DHR-2, Lobe C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16340 AT4G16340
fragaria_vesca	FvH4_3g14770 FvH4_3g14770 FvH4_3g14770
malus_domestica	MD05G1229900.v1.1 MD05G1233200.v1.1 MD10G1209700.v1.1
prunus_persica	Prupe.3G108400_v2.0.a1 Prupe.4G132800_v2.0.a1
pyrus_communis	pycom05g21080 pycom05g21090 pycom10g17800 pycom10g17820
rosa_chinensis	RchiOBHm_Chr1g0327621 RchiOBHm_Chr3g0473981 RchiOBHm_Chr5g0024291 RchiOBHm_Chr5g0024301 RchiOBHm_Chr5g0024371 RchiOBHm_Chr5g0024381
rosa_laevigata	RLG00000029979 RLG00000032795 RLG00000036969
rosa_multiflora	Rmu_co8048528.1_g000001 Rmu_co8378897.1_g000002 Rmu_sc0005861.1_g000003 Rmu_sc0015218.1_g000005 Rmu_ssc0000042.1_g000009
rosa_roxburghii	Rroxscaffold_1G00054850 Rroxscaffold_1G00054890 Rroxscaffold_1G00055790 Rroxscaffold_1G00055850 Rroxscaffold_4G00322510
rosa_rugosa	Rorug01G0068800 Rorug05G0083000 Rorug05G0083100
rosa_samantha	Rh3AG187600 Rh3BG216300 Rh3CG212800 Rh5AG173700 Rh5BG170500 Rh5BG170900 Rh5BG171900 Rh5BG172000 Rh5CG186800 Rh5CG187500 Rh5CG187600 Rh5DG173100
rosa_wichuraiana	Rw0G000890 Rw3G017190 Rw5G015680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1092
Acc36I	ACCTGC	1 cut(s)	1366
AccI	GTMKAC	1 cut(s)	1263
AccIII	TCCGGA	1 cut(s)	1363
AciI	CCGC	5 cut(s)	1102, 1522, 1594, 1885, 1913
AclWI	GGATC	2 cut(s)	1427, 1770
AcoI	YGGCCR	1 cut(s)	855
AcsI	RAATTY	6 cut(s)	234, 306, 401, 494, 906, 1794
AcuI	CTGAAG	4 cut(s)	374, 1589, 1632, 1947
AcvI	CACGTG	1 cut(s)	1277
AfaI	GTAC	4 cut(s)	99, 512, 1007, 1958
AfiI	CCNNNNNNNGG	2 cut(s)	188, 1168
AgsI	TTSAA	7 cut(s)	51, 233, 271, 493, 1706, 1739, 1802
AjiI	CACGTC	1 cut(s)	1775
AjnI	CCWGG	2 cut(s)	421, 1288
AjuI	GAANNNNNNNTTGG	4 cut(s)	123, 155, 1677, 1709
Alw21I	GWGCWC	3 cut(s)	120, 222, 1850
Alw26I	GTCTC	1 cut(s)	1781
Alw44I	GTGCAC	2 cut(s)	116, 1846
AlwI	GGATC	2 cut(s)	1427, 1770
AlwNI	CAGNNNCTG	1 cut(s)	806
Aor13HI	TCCGGA	1 cut(s)	1363
AoxI	GGCC	1 cut(s)	855
ApaLI	GTGCAC	2 cut(s)	116, 1846
ApeKI	GCWGC	7 cut(s)	689, 692, 944, 947, 950, 1718, 1900
ApoI	RAATTY	6 cut(s)	234, 306, 401, 494, 906, 1794
ArsI	GACNNNNNNTTYG	2 cut(s)	565, 597
Asp700I	GAANNNNTTC	2 cut(s)	1047, 1480
AspS9I	GGNCC	1 cut(s)	581
AsuHPI	GGTGA	4 cut(s)	268, 1238, 1304, 1877
AvaII	GGWCC	1 cut(s)	581
BaeGI	GKGCMC	2 cut(s)	120, 1850
BalI	TGGCCA	1 cut(s)	857
BbrPI	CACGTG	1 cut(s)	1277
BbsI	GAAGAC	1 cut(s)	1584
Bbv12I	GWGCWC	3 cut(s)	120, 222, 1850
BbvCI	CCTCAGC	1 cut(s)	954
BbvI	GCAGC	7 cut(s)	679, 701, 931, 934, 962, 1705, 1912
BccI	CCATC	7 cut(s)	64, 252, 339, 607, 860, 1331, 1957
BceAI	ACGGC	2 cut(s)	983, 1731
BciT130I	CCWGG	2 cut(s)	423, 1290
BclI	TGATCA	1 cut(s)	457
BcoDI	GTCTC	1 cut(s)	1781
BfaI	CTAG	2 cut(s)	1329, 1371
BfmI	CTRYAG	4 cut(s)	693, 948, 1207, 1680
BfuAI	ACCTGC	1 cut(s)	1366
BglII	AGATCT	2 cut(s)	739, 883
BisI	GCNGC	8 cut(s)	690, 693, 945, 948, 951, 1719, 1901, 1914
BlpI	GCTNAGC	1 cut(s)	1118
BlsI	GCNGC	8 cut(s)	691, 694, 946, 949, 952, 1720, 1902, 1915
BmcAI	AGTACT	1 cut(s)	99
Bme1390I	CCNGG	2 cut(s)	423, 1290
Bme18I	GGWCC	1 cut(s)	581
BmgBI	CACGTC	1 cut(s)	1775
BmgT120I	GGNCC	1 cut(s)	581
BmiI	GGNNCC	2 cut(s)	242, 1272
BmrFI	CCNGG	2 cut(s)	423, 1290
BmsI	GCATC	4 cut(s)	80, 763, 983, 1186
BpiI	GAAGAC	1 cut(s)	1584
BplI	GAGNNNNNCTC	2 cut(s)	920, 952
BpmI	CTGGAG	2 cut(s)	1422, 1763
Bpu10I	CCTNAGC	1 cut(s)	954
Bpu1102I	GCTNAGC	1 cut(s)	1118
BpuEI	CTTGAG	4 cut(s)	1020, 1184, 1548, 1688
BsaAI	YACGTR	3 cut(s)	902, 1277, 1727
BsaBI	GATNNNNATC	2 cut(s)	777, 1341
BsaWI	WCCGGW	1 cut(s)	1363
Bsc4I	CCNNNNNNNGG	2 cut(s)	188, 1168
Bse118I	RCCGGY	2 cut(s)	188, 1785
Bse1I	ACTGG	5 cut(s)	226, 528, 1085, 1436, 1582
Bse3DI	GCAATG	2 cut(s)	70, 1908
Bse8I	GATNNNNATC	2 cut(s)	777, 1341
BseAI	TCCGGA	1 cut(s)	1363
BseBI	CCWGG	2 cut(s)	423, 1290
BseGI	GGATG	5 cut(s)	95, 118, 212, 1342, 1949
BseJI	GATNNNNATC	2 cut(s)	777, 1341
BseLI	CCNNNNNNNGG	2 cut(s)	188, 1168
BseMI	GCAATG	2 cut(s)	70, 1908
BseMII	CTCAG	6 cut(s)	134, 824, 930, 945, 1109, 1746
BseNI	ACTGG	5 cut(s)	226, 528, 1085, 1436, 1582
BseRI	GAGGAG	1 cut(s)	456
BseSI	GKGCMC	2 cut(s)	120, 1850
BseXI	GCAGC	7 cut(s)	679, 701, 931, 934, 962, 1705, 1912
BseYI	CCCAGC	2 cut(s)	446, 1624
Bsh1285I	CGRYCG	1 cut(s)	562
BshFI	GGCC	1 cut(s)	857
BsiEI	CGRYCG	1 cut(s)	562
BsiHKAI	GWGCWC	3 cut(s)	120, 222, 1850
BsiSI	CCGG	3 cut(s)	189, 1364, 1786
BslFI	GGGAC	1 cut(s)	719
BslI	CCNNNNNNNGG	2 cut(s)	188, 1168
BsmAI	GTCTC	1 cut(s)	1781
BsmBI	CGTCTC	1 cut(s)	1781
BsmFI	GGGAC	1 cut(s)	719
BsmI	GAATGC	2 cut(s)	1065, 1853
BsnI	GGCC	1 cut(s)	857
Bsp1286I	GDGCHC	3 cut(s)	120, 222, 1850
Bsp13I	TCCGGA	1 cut(s)	1363
Bsp1407I	TGTACA	1 cut(s)	1956
Bsp143I	GATC	7 cut(s)	160, 457, 739, 883, 930, 1432, 1762
Bsp1720I	GCTNAGC	1 cut(s)	1118
BspACI	CCGC	5 cut(s)	1102, 1522, 1594, 1885, 1913
BspANI	GGCC	1 cut(s)	857
BspCNI	CTCAG	6 cut(s)	135, 823, 931, 946, 1110, 1747
BspEI	TCCGGA	1 cut(s)	1363
BspHI	TCATGA	1 cut(s)	103
BspLI	GGNNCC	2 cut(s)	242, 1272
BspMAI	CTGCAG	2 cut(s)	697, 952
BspMI	ACCTGC	1 cut(s)	1366
BspPI	GGATC	2 cut(s)	1427, 1770
BspQI	GCTCTTC	1 cut(s)	1734
BsrDI	GCAATG	2 cut(s)	70, 1908
BsrFI	RCCGGY	2 cut(s)	188, 1785
BsrGI	TGTACA	1 cut(s)	1956
BsrI	ACTGG	5 cut(s)	226, 528, 1085, 1436, 1582
BssAI	RCCGGY	2 cut(s)	188, 1785
BssMI	GATC	7 cut(s)	160, 457, 739, 883, 930, 1432, 1762
BssNAI	GTATAC	1 cut(s)	1264
Bst1107I	GTATAC	1 cut(s)	1264
Bst2UI	CCWGG	2 cut(s)	423, 1290
Bst4CI	ACNGT	8 cut(s)	203, 560, 581, 599, 988, 1600, 1829, 1881
Bst6I	CTCTTC	4 cut(s)	363, 1466, 1583, 1734
BstAPI	GCANNNNNTGC	1 cut(s)	806
BstAUI	TGTACA	1 cut(s)	1956
BstBAI	YACGTR	3 cut(s)	902, 1277, 1727
BstC8I	GCNNGC	9 cut(s)	714, 846, 1063, 1100, 1104, 1787, 1872, 1942, 1946
BstDEI	CTNAG	8 cut(s)	143, 810, 939, 954, 1118, 1310, 1755, 1838
BstENI	CCTNNNNNAGG	1 cut(s)	1166
BstF5I	GGATG	5 cut(s)	95, 118, 212, 1342, 1949
BstKTI	GATC	7 cut(s)	163, 460, 742, 886, 933, 1435, 1765
BstMAI	GTCTC	1 cut(s)	1781
BstMBI	GATC	7 cut(s)	160, 457, 739, 883, 930, 1432, 1762
BstMCI	CGRYCG	1 cut(s)	562
BstMWI	GCNNNNNNNGC	5 cut(s)	286, 806, 815, 854, 950
BstNI	CCWGG	2 cut(s)	423, 1290
BstNSI	RCATGY	1 cut(s)	592
BstSCI	CCNGG	2 cut(s)	421, 1288
BstSFI	CTRYAG	4 cut(s)	693, 948, 1207, 1680
BstSLI	GKGCMC	2 cut(s)	120, 1850
BstSNI	TACGTA	2 cut(s)	902, 1727
BstV1I	GCAGC	7 cut(s)	679, 701, 931, 934, 962, 1705, 1912
BstV2I	GAAGAC	1 cut(s)	1584
BstX2I	RGATCY	2 cut(s)	739, 883
BstYI	RGATCY	2 cut(s)	739, 883
BstZ17I	GTATAC	1 cut(s)	1264
BsuRI	GGCC	1 cut(s)	857
BtrI	CACGTC	1 cut(s)	1775
BtsCI	GGATG	5 cut(s)	95, 118, 212, 1342, 1949
BtsI	GCAGTG	1 cut(s)	1848
BtsIMutI	CAGTG	6 cut(s)	595, 818, 1191, 1589, 1834, 1848
BveI	ACCTGC	1 cut(s)	1366
Cac8I	GCNNGC	9 cut(s)	714, 846, 1063, 1100, 1104, 1787, 1872, 1942, 1946
CaiI	CAGNNNCTG	1 cut(s)	806
CciI	TCATGA	1 cut(s)	103
Cfr10I	RCCGGY	2 cut(s)	188, 1785
Cfr13I	GGNCC	1 cut(s)	581
CsiI	ACCWGGT	1 cut(s)	1288
Csp6I	GTAC	4 cut(s)	98, 511, 1006, 1957
CviAII	CATG	6 cut(s)	104, 185, 311, 589, 1441, 1954
CviQI	GTAC	4 cut(s)	98, 511, 1006, 1957
DdeI	CTNAG	8 cut(s)	143, 810, 939, 954, 1118, 1310, 1755, 1838
DpnI	GATC	7 cut(s)	162, 459, 741, 885, 932, 1434, 1764
DpnII	GATC	7 cut(s)	160, 457, 739, 883, 930, 1432, 1762
EaeI	YGGCCR	1 cut(s)	855
Eam1104I	CTCTTC	4 cut(s)	363, 1466, 1583, 1734
EarI	CTCTTC	4 cut(s)	363, 1466, 1583, 1734
EciI	GGCGGA	1 cut(s)	1609
Eco105I	TACGTA	2 cut(s)	902, 1727
Eco47I	GGWCC	1 cut(s)	581
Eco57I	CTGAAG	4 cut(s)	374, 1589, 1632, 1947
Eco72I	CACGTG	1 cut(s)	1277
EcoNI	CCTNNNNNAGG	1 cut(s)	1166
EcoRI	GAATTC	1 cut(s)	1794
EcoRII	CCWGG	2 cut(s)	421, 1288
Esp3I	CGTCTC	1 cut(s)	1781
FaeI	CATG	6 cut(s)	107, 188, 314, 592, 1444, 1957
FalI	AAGNNNNNCTT	4 cut(s)	1029, 1061, 1463, 1495
FaqI	GGGAC	1 cut(s)	719
FatI	CATG	6 cut(s)	103, 184, 310, 588, 1440, 1953
FauI	CCCGC	1 cut(s)	1095
FauNDI	CATATG	1 cut(s)	1108
FbaI	TGATCA	1 cut(s)	457
FblI	GTMKAC	1 cut(s)	1263
Fnu4HI	GCNGC	8 cut(s)	690, 693, 945, 948, 951, 1719, 1901, 1914
FokI	GGATG	5 cut(s)	102, 125, 199, 1349, 1936
Fsp4HI	GCNGC	8 cut(s)	690, 693, 945, 948, 951, 1719, 1901, 1914
FspBI	CTAG	2 cut(s)	1329, 1371
GluI	GCNGC	8 cut(s)	690, 693, 945, 948, 951, 1719, 1901, 1914
GsaI	CCCAGC	2 cut(s)	450, 1628
GsuI	CTGGAG	2 cut(s)	1422, 1763
HaeIII	GGCC	1 cut(s)	857
HapII	CCGG	3 cut(s)	189, 1364, 1786
Hin1II	CATG	6 cut(s)	107, 188, 314, 592, 1444, 1957
HincII	GTYRAC	3 cut(s)	991, 1636, 1825
HindII	GTYRAC	3 cut(s)	991, 1636, 1825
HindIII	AAGCTT	2 cut(s)	700, 710
HpaI	GTTAAC	1 cut(s)	1636
HpaII	CCGG	3 cut(s)	189, 1364, 1786
HphI	GGTGA	4 cut(s)	268, 1238, 1304, 1877
Hpy166II	GTNNAC	7 cut(s)	118, 991, 1264, 1636, 1825, 1848, 1959
Hpy8I	GTNNAC	7 cut(s)	118, 991, 1264, 1636, 1825, 1848, 1959
HpyAV	CCTTC	6 cut(s)	499, 534, 647, 1245, 1461, 1607
HpyCH4III	ACNGT	8 cut(s)	203, 560, 581, 599, 988, 1600, 1829, 1881
HpyCH4IV	ACGT	4 cut(s)	901, 1276, 1726, 1774
HpyF10VI	GCNNNNNNNGC	5 cut(s)	286, 806, 815, 854, 950
HpyF3I	CTNAG	8 cut(s)	143, 810, 939, 954, 1118, 1310, 1755, 1838
HpySE526I	ACGT	4 cut(s)	901, 1276, 1726, 1774
Hsp92II	CATG	6 cut(s)	107, 188, 314, 592, 1444, 1957
Kpn2I	TCCGGA	1 cut(s)	1363
KroI	GCCGGC	1 cut(s)	1785
KroNI	GCCGGC	1 cut(s)	1787
Ksp22I	TGATCA	1 cut(s)	457
KspAI	GTTAAC	1 cut(s)	1636
Kzo9I	GATC	7 cut(s)	160, 457, 739, 883, 930, 1432, 1762
LguI	GCTCTTC	1 cut(s)	1734
LmnI	GCTCC	3 cut(s)	443, 876, 1270
Lsp1109I	GCAGC	7 cut(s)	679, 701, 931, 934, 962, 1705, 1912
LweI	GCATC	4 cut(s)	80, 763, 983, 1186
MabI	ACCWGGT	1 cut(s)	1288
MaeI	CTAG	2 cut(s)	1329, 1371
MaeII	ACGT	4 cut(s)	901, 1276, 1726, 1774
MaeIII	GTNAC	8 cut(s)	191, 313, 530, 756, 1127, 1292, 1648, 1887
MalI	GATC	7 cut(s)	162, 459, 741, 885, 932, 1434, 1764
MboI	GATC	7 cut(s)	160, 457, 739, 883, 930, 1432, 1762
MflI	RGATCY	2 cut(s)	739, 883
MhlI	GDGCHC	3 cut(s)	120, 222, 1850
MlsI	TGGCCA	1 cut(s)	857
MluNI	TGGCCA	1 cut(s)	857
MlyI	GAGTC	5 cut(s)	38, 656, 986, 1334, 1521
MmeI	TCCRAC	1 cut(s)	454
Mox20I	TGGCCA	1 cut(s)	857
MroI	TCCGGA	1 cut(s)	1363
MroNI	GCCGGC	1 cut(s)	1785
MroXI	GAANNNNTTC	2 cut(s)	1047, 1480
MscI	TGGCCA	1 cut(s)	857
MseI	TTAA	4 cut(s)	576, 602, 654, 1635
MslI	CAYNNNNRTG	3 cut(s)	768, 1056, 1697
Msp20I	TGGCCA	1 cut(s)	857
MspA1I	CMGCKG	3 cut(s)	692, 953, 1117
MspI	CCGG	3 cut(s)	189, 1364, 1786
MspR9I	CCNGG	2 cut(s)	423, 1290
Mva1269I	GAATGC	2 cut(s)	1065, 1853
MvaI	CCWGG	2 cut(s)	423, 1290
MwoI	GCNNNNNNNGC	5 cut(s)	286, 806, 815, 854, 950
NaeI	GCCGGC	1 cut(s)	1787
NdeI	CATATG	1 cut(s)	1108
NdeII	GATC	7 cut(s)	160, 457, 739, 883, 930, 1432, 1762
NgoMIV	GCCGGC	1 cut(s)	1785
NlaIII	CATG	6 cut(s)	107, 188, 314, 592, 1444, 1957
NlaIV	GGNNCC	2 cut(s)	242, 1272
NmuCI	GTSAC	4 cut(s)	313, 1127, 1292, 1887
NspI	RCATGY	1 cut(s)	592
PagI	TCATGA	1 cut(s)	103
PciSI	GCTCTTC	1 cut(s)	1734
PcsI	WCGNNNNNNNCGW	2 cut(s)	160, 568
PctI	GAATGC	2 cut(s)	1065, 1853
PdiI	GCCGGC	1 cut(s)	1787
PdmI	GAANNNNTTC	2 cut(s)	1047, 1480
PfeI	GAWTC	8 cut(s)	264, 566, 803, 1154, 1172, 1367, 1476, 1661
PkrI	GCNGC	8 cut(s)	691, 694, 946, 949, 952, 1720, 1902, 1915
PleI	GAGTC	5 cut(s)	37, 656, 986, 1333, 1520
PmaCI	CACGTG	1 cut(s)	1277
PmlI	CACGTG	1 cut(s)	1277
PpsI	GAGTC	5 cut(s)	37, 656, 986, 1333, 1520
Ppu21I	YACGTR	3 cut(s)	902, 1277, 1727
PsiI	TTATAA	1 cut(s)	1092
Psp6I	CCWGG	2 cut(s)	421, 1288
PspCI	CACGTG	1 cut(s)	1277
PspFI	CCCAGC	2 cut(s)	446, 1624
PspGI	CCWGG	2 cut(s)	421, 1288
PspN4I	GGNNCC	2 cut(s)	242, 1272
PspPI	GGNCC	1 cut(s)	581
PstI	CTGCAG	2 cut(s)	697, 952
PstNI	CAGNNNCTG	1 cut(s)	806
PsuI	RGATCY	2 cut(s)	739, 883
PvuII	CAGCTG	3 cut(s)	692, 953, 1117
RsaI	GTAC	4 cut(s)	99, 512, 1007, 1958
RsaNI	GTAC	4 cut(s)	98, 511, 1006, 1957
RseI	CAYNNNNRTG	3 cut(s)	768, 1056, 1697
SapI	GCTCTTC	1 cut(s)	1734
SaqAI	TTAA	4 cut(s)	576, 602, 654, 1635
SatI	GCNGC	8 cut(s)	690, 693, 945, 948, 951, 1719, 1901, 1914
Sau3AI	GATC	7 cut(s)	160, 457, 739, 883, 930, 1432, 1762
Sau96I	GGNCC	1 cut(s)	581
ScaI	AGTACT	1 cut(s)	99
SchI	GAGTC	5 cut(s)	38, 656, 986, 1334, 1521
ScrFI	CCNGG	2 cut(s)	423, 1290
SduI	GDGCHC	3 cut(s)	120, 222, 1850
SexAI	ACCWGGT	1 cut(s)	1288
SfaNI	GCATC	4 cut(s)	80, 763, 983, 1186
SfcI	CTRYAG	4 cut(s)	693, 948, 1207, 1680
SinI	GGWCC	1 cut(s)	581
SmiMI	CAYNNNNRTG	3 cut(s)	768, 1056, 1697
SmlI	CTYRAG	4 cut(s)	1035, 1163, 1563, 1667
SmoI	CTYRAG	4 cut(s)	1035, 1163, 1563, 1667
SnaBI	TACGTA	2 cut(s)	902, 1727
SsiI	CCGC	5 cut(s)	1102, 1522, 1594, 1885, 1913
SspMI	CTAG	2 cut(s)	1329, 1371
StyD4I	CCNGG	2 cut(s)	421, 1288
TaaI	ACNGT	8 cut(s)	203, 560, 581, 599, 988, 1600, 1829, 1881
TaiI	ACGT	4 cut(s)	904, 1279, 1729, 1777
TaqI	TCGA	3 cut(s)	18, 163, 571
TatI	WGTACW	2 cut(s)	97, 1956
TauI	GCSGC	1 cut(s)	1916
TfiI	GAWTC	8 cut(s)	264, 566, 803, 1154, 1172, 1367, 1476, 1661
Tru1I	TTAA	4 cut(s)	576, 602, 654, 1635
Tru9I	TTAA	4 cut(s)	576, 602, 654, 1635
TscAI	CASTG	6 cut(s)	602, 818, 1198, 1589, 1834, 1855
TseFI	GTSAC	4 cut(s)	313, 1127, 1292, 1887
TseI	GCWGC	7 cut(s)	689, 692, 944, 947, 950, 1718, 1900
Tsp45I	GTSAC	4 cut(s)	313, 1127, 1292, 1887
TspRI	CASTG	6 cut(s)	602, 818, 1198, 1589, 1834, 1855
VneI	GTGCAC	2 cut(s)	116, 1846
VpaK11BI	GGWCC	1 cut(s)	581
XagI	CCTNNNNNAGG	1 cut(s)	1166
XapI	RAATTY	6 cut(s)	234, 306, 401, 494, 906, 1794
XceI	RCATGY	1 cut(s)	592
XmiI	GTMKAC	1 cut(s)	1263
XmnI	GAANNNNTTC	2 cut(s)	1047, 1480
XspI	CTAG	2 cut(s)	1329, 1371
ZrmI	AGTACT	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.