Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001516

Physical Location & Seq

Genomic Coordinates Forward (+)

18717725 .. 18718558

Gene Structure 834 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG187500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGCCAGAAATGATGGTGTTTGGAGCAAAGATCACATAACTGCTCTGCGTAAAATTTGTCCAATGGTCAGTAGTGAGATCAGCTCTGAGGCTGCTGCAGCTGAGGTAGAGGGATATGGTGCATCAAAACTTACTGTTGACTCTGCCGTGAAGTACCTACAACTCGCAAATAAGCTCTTTTCTCAAGCTGAACTTTTTCATTTCTGTGCAAGCATTCTGGAACTTGTTATTCCAGTTTATAAAAGCAGGCGGGCATATGGACAGCTGAGCAAATGTCACACAATGCTTACTAATATATATGAATCAATCCTTGAGCAGGAATCAAGCCCAATTCCATTCACTGATGCAACATGCTATAGGGTAGGGTTTTATGGTGATAGATTTGGAAAATTAGACAGAAAGGAATATGTATACAGGGAGCCACGTGATGTAAGACCAGGTGACATAATGGAGAAACTTAGCCATAGCTACGAGTCTAGTATGGATGGAAATCACACCTTACACATCATTCCGGGTTCTAGGCAGGTAAAGGCAGATGAGTTGCAGTCTGGAGTATGCTATTTTCAGATAACTGCTGTTGATCCAGTCATGGAAGATGAAGATTTGGGAAGCAGAAGGAAGAGAATCTTCTCTCTTTCAACAGGAAGTGTTCGTGCCCGAGTCTTTGACCGCTTTTTGTTTGATACACCTTTTACGAAAAATGGAAAAACTCAAGGTGGATTGGAAGACCAGTGGAAGAGGCGGACTGTTCTTCAGACTGAAGGTTCATTCCCAGCTCTTGTTAACAGGCTTGTAGTTACTATATCCGAATCGCTTGAGTTCTCCCCTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0006810 GO:0008064 GO:0008150 GO:0008360 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009958 GO:0009966 GO:0009987 GO:0010646 GO:0010928 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0017016 GO:0017048 GO:0019898 GO:0019899 GO:0022603 GO:0022604 GO:0023051 GO:0030832 GO:0031267 GO:0032535 GO:0032956 GO:0032970 GO:0033043 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051020 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0065007 GO:0065008 GO:0065009 GO:0070971 GO:0071840 GO:0071944 GO:0090066 GO:0098772 GO:0110053 GO:1902903

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DHR-2 DOCK-C2

Protein Analysis

277

Amino Acids

31.28

Weight (kDa)

6.61

Isoelectric Point (pI)

49.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHR-2_Lobe_A	PF06920	4 - 105	4.2e-19	DHR-2, Lobe A
DHR-2_Lobe_B	PF20422	173 - 255	3.4e-23	DHR-2, Lobe B

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16340 AT4G16340
fragaria_vesca	FvH4_3g14770 FvH4_3g14770 FvH4_3g14770
malus_domestica	MD05G1229900.v1.1 MD05G1233200.v1.1 MD10G1209700.v1.1
prunus_persica	Prupe.3G108400_v2.0.a1 Prupe.4G132800_v2.0.a1
pyrus_communis	pycom05g21080 pycom05g21090 pycom10g17800 pycom10g17820
rosa_chinensis	RchiOBHm_Chr1g0327621 RchiOBHm_Chr3g0473981 RchiOBHm_Chr5g0024291 RchiOBHm_Chr5g0024301 RchiOBHm_Chr5g0024371 RchiOBHm_Chr5g0024381
rosa_laevigata	RLG00000029979 RLG00000032795 RLG00000036969
rosa_multiflora	Rmu_co8048528.1_g000001 Rmu_co8378897.1_g000002 Rmu_sc0005861.1_g000003 Rmu_sc0015218.1_g000005 Rmu_ssc0000042.1_g000009
rosa_roxburghii	Rroxscaffold_1G00054850 Rroxscaffold_1G00054890 Rroxscaffold_1G00055790 Rroxscaffold_1G00055850 Rroxscaffold_4G00322510
rosa_rugosa	Rorug01G0068800 Rorug05G0083000 Rorug05G0083100
rosa_samantha	Rh3AG187600 Rh3BG216300 Rh3CG212800 Rh5AG173700 Rh5BG170500 Rh5BG170900 Rh5BG171900 Rh5BG172000 Rh5CG186800 Rh5CG187500 Rh5CG187600 Rh5DG173100
rosa_wichuraiana	Rw0G000890 Rw3G017190 Rw5G015680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	240
Acc36I	ACCTGC	1 cut(s)	514
AccI	GTMKAC	1 cut(s)	411
AciI	CCGC	3 cut(s)	250, 670, 742
AclWI	GGATC	1 cut(s)	575
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	54
AcuI	CTGAAG	2 cut(s)	737, 780
AcvI	CACGTG	1 cut(s)	425
AfaI	GTAC	1 cut(s)	155
AfiI	CCNNNNNNNGG	1 cut(s)	316
AgsI	TTSAA	1 cut(s)	639
AjnI	CCWGG	1 cut(s)	436
AluBI	AGCT	7 cut(s)	84, 101, 175, 188, 265, 468, 776
AluI	AGCT	7 cut(s)	84, 101, 175, 188, 265, 468, 776
AlwI	GGATC	1 cut(s)	575
Ama87I	CYCGRG	1 cut(s)	657
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	3 cut(s)	92, 95, 98
ApoI	RAATTY	1 cut(s)	54
Asp700I	GAANNNNTTC	1 cut(s)	195
AsuC2I	CCSGG	1 cut(s)	513
AsuHPI	GGTGA	2 cut(s)	386, 452
AvaI	CYCGRG	1 cut(s)	657
BaeGI	GKGCMC	1 cut(s)	658
BalI	TGGCCA	1 cut(s)	5
BbrPI	CACGTG	1 cut(s)	425
BbsI	GAAGAC	1 cut(s)	732
BbvCI	CCTCAGC	1 cut(s)	102
BbvI	GCAGC	3 cut(s)	79, 82, 110
BccI	CCATC	2 cut(s)	8, 479
BceAI	ACGGC	1 cut(s)	131
BciT130I	CCWGG	1 cut(s)	438
BcnI	CCSGG	1 cut(s)	513
BfaI	CTAG	2 cut(s)	477, 519
BfmI	CTRYAG	2 cut(s)	96, 355
BfuAI	ACCTGC	1 cut(s)	514
BisI	GCNGC	3 cut(s)	93, 96, 99
BlpI	GCTNAGC	1 cut(s)	266
BlsI	GCNGC	3 cut(s)	94, 97, 100
Bme1390I	CCNGG	2 cut(s)	438, 513
BmeT110I	CYCGRG	1 cut(s)	657
BmiI	GGNNCC	1 cut(s)	420
BmrFI	CCNGG	2 cut(s)	438, 513
BmsI	GCATC	2 cut(s)	131, 334
BpiI	GAAGAC	1 cut(s)	732
BplI	GAGNNNNNCTC	2 cut(s)	68, 100
BpmI	CTGGAG	1 cut(s)	570
Bpu10I	CCTNAGC	1 cut(s)	102
Bpu1102I	GCTNAGC	1 cut(s)	266
BpuEI	CTTGAG	3 cut(s)	168, 332, 696
BpuMI	CCSGG	1 cut(s)	513
BsaAI	YACGTR	1 cut(s)	425
BsaBI	GATNNNNATC	1 cut(s)	489
Bsc4I	CCNNNNNNNGG	1 cut(s)	316
Bse1I	ACTGG	3 cut(s)	233, 584, 730
Bse8I	GATNNNNATC	1 cut(s)	489
BseBI	CCWGG	1 cut(s)	438
BseGI	GGATG	1 cut(s)	490
BseJI	GATNNNNATC	1 cut(s)	489
BseLI	CCNNNNNNNGG	1 cut(s)	316
BseMII	CTCAG	3 cut(s)	78, 93, 257
BseNI	ACTGG	3 cut(s)	233, 584, 730
BseSI	GKGCMC	1 cut(s)	658
BseXI	GCAGC	3 cut(s)	79, 82, 110
BseYI	CCCAGC	1 cut(s)	772
BshFI	GGCC	1 cut(s)	5
BsiHKCI	CYCGRG	1 cut(s)	657
BsiSI	CCGG	1 cut(s)	512
BslI	CCNNNNNNNGG	1 cut(s)	316
BsmI	GAATGC	1 cut(s)	213
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	657
Bsp1286I	GDGCHC	1 cut(s)	658
Bsp143I	GATC	3 cut(s)	31, 78, 580
Bsp1720I	GCTNAGC	1 cut(s)	266
BspACI	CCGC	3 cut(s)	250, 670, 742
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	3 cut(s)	79, 94, 258
BspLI	GGNNCC	1 cut(s)	420
BspMAI	CTGCAG	1 cut(s)	100
BspMI	ACCTGC	1 cut(s)	514
BspPI	GGATC	1 cut(s)	575
BsrI	ACTGG	3 cut(s)	233, 584, 730
BssMI	GATC	3 cut(s)	31, 78, 580
BssNAI	GTATAC	1 cut(s)	412
Bst1107I	GTATAC	1 cut(s)	412
Bst2UI	CCWGG	1 cut(s)	438
Bst4CI	ACNGT	2 cut(s)	136, 748
Bst6I	CTCTTC	2 cut(s)	614, 731
BstBAI	YACGTR	1 cut(s)	425
BstC8I	GCNNGC	3 cut(s)	211, 248, 252
BstDEI	CTNAG	4 cut(s)	87, 102, 266, 458
BstENI	CCTNNNNNAGG	1 cut(s)	314
BstF5I	GGATG	1 cut(s)	490
BstKTI	GATC	3 cut(s)	34, 81, 583
BstMBI	GATC	3 cut(s)	31, 78, 580
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstNI	CCWGG	1 cut(s)	438
BstNSI	RCATGY	1 cut(s)	354
BstSCI	CCNGG	2 cut(s)	436, 511
BstSFI	CTRYAG	2 cut(s)	96, 355
BstSLI	GKGCMC	1 cut(s)	658
BstV1I	GCAGC	3 cut(s)	79, 82, 110
BstV2I	GAAGAC	1 cut(s)	732
BstZ17I	GTATAC	1 cut(s)	412
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	490
BtsIMutI	CAGTG	2 cut(s)	339, 737
BveI	ACCTGC	1 cut(s)	514
Cac8I	GCNNGC	3 cut(s)	211, 248, 252
CsiI	ACCWGGT	1 cut(s)	436
Csp6I	GTAC	1 cut(s)	154
CviAII	CATG	2 cut(s)	351, 589
CviQI	GTAC	1 cut(s)	154
DdeI	CTNAG	4 cut(s)	87, 102, 266, 458
DpnI	GATC	3 cut(s)	33, 80, 582
DpnII	GATC	3 cut(s)	31, 78, 580
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	614, 731
EarI	CTCTTC	2 cut(s)	614, 731
EciI	GGCGGA	1 cut(s)	757
Eco57I	CTGAAG	2 cut(s)	737, 780
Eco72I	CACGTG	1 cut(s)	425
Eco88I	CYCGRG	1 cut(s)	657
EcoNI	CCTNNNNNAGG	1 cut(s)	314
EcoRII	CCWGG	1 cut(s)	436
FaeI	CATG	2 cut(s)	354, 592
FalI	AAGNNNNNCTT	4 cut(s)	177, 209, 611, 643
FatI	CATG	2 cut(s)	350, 588
FauI	CCCGC	1 cut(s)	243
FauNDI	CATATG	1 cut(s)	256
FblI	GTMKAC	1 cut(s)	411
Fnu4HI	GCNGC	3 cut(s)	93, 96, 99
FokI	GGATG	1 cut(s)	497
Fsp4HI	GCNGC	3 cut(s)	93, 96, 99
FspBI	CTAG	2 cut(s)	477, 519
GluI	GCNGC	3 cut(s)	93, 96, 99
GsaI	CCCAGC	1 cut(s)	776
GsuI	CTGGAG	1 cut(s)	570
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	512
Hin1II	CATG	2 cut(s)	354, 592
HincII	GTYRAC	2 cut(s)	139, 784
HindII	GTYRAC	2 cut(s)	139, 784
HinfI	GANTC	7 cut(s)	140, 302, 320, 473, 624, 660, 809
HpaI	GTTAAC	1 cut(s)	784
HpaII	CCGG	1 cut(s)	512
HphI	GGTGA	2 cut(s)	386, 452
Hpy166II	GTNNAC	3 cut(s)	139, 412, 784
Hpy188I	TCNGA	4 cut(s)	88, 567, 756, 808
Hpy188III	TCNNGA	2 cut(s)	218, 549
Hpy8I	GTNNAC	3 cut(s)	139, 412, 784
HpyAV	CCTTC	2 cut(s)	609, 755
HpyCH4III	ACNGT	2 cut(s)	136, 748
HpyCH4IV	ACGT	1 cut(s)	424
HpyCH4V	TGCA	5 cut(s)	98, 122, 209, 347, 544
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
HpyF3I	CTNAG	4 cut(s)	87, 102, 266, 458
HpySE526I	ACGT	1 cut(s)	424
Hsp92II	CATG	2 cut(s)	354, 592
KspAI	GTTAAC	1 cut(s)	784
Kzo9I	GATC	3 cut(s)	31, 78, 580
LmnI	GCTCC	2 cut(s)	24, 418
Lsp1109I	GCAGC	3 cut(s)	79, 82, 110
LweI	GCATC	2 cut(s)	131, 334
MabI	ACCWGGT	1 cut(s)	436
MaeI	CTAG	2 cut(s)	477, 519
MaeII	ACGT	1 cut(s)	424
MaeIII	GTNAC	3 cut(s)	275, 440, 796
MalI	GATC	3 cut(s)	33, 80, 582
MboI	GATC	3 cut(s)	31, 78, 580
MboII	GAAGA	7 cut(s)	605, 611, 619, 631, 737, 743, 748
MhlI	GDGCHC	1 cut(s)	658
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	54, 330, 389
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	134, 482, 669
MnlI	CCTC	4 cut(s)	82, 97, 103, 732
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	195
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	783
MslI	CAYNNNNRTG	1 cut(s)	204
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	101, 265
MspI	CCGG	1 cut(s)	512
MspR9I	CCNGG	2 cut(s)	438, 513
Mva1269I	GAATGC	1 cut(s)	213
MvaI	CCWGG	1 cut(s)	438
MwoI	GCNNNNNNNGC	1 cut(s)	98
NciI	CCSGG	1 cut(s)	513
NdeI	CATATG	1 cut(s)	256
NdeII	GATC	3 cut(s)	31, 78, 580
NlaIII	CATG	2 cut(s)	354, 592
NlaIV	GGNNCC	1 cut(s)	420
NmuCI	GTSAC	2 cut(s)	275, 440
NspI	RCATGY	1 cut(s)	354
PctI	GAATGC	1 cut(s)	213
PdmI	GAANNNNTTC	1 cut(s)	195
PfeI	GAWTC	4 cut(s)	302, 320, 624, 809
PkrI	GCNGC	3 cut(s)	94, 97, 100
PleI	GAGTC	3 cut(s)	134, 481, 668
PmaCI	CACGTG	1 cut(s)	425
PmlI	CACGTG	1 cut(s)	425
PpsI	GAGTC	3 cut(s)	134, 481, 668
Ppu21I	YACGTR	1 cut(s)	425
PsiI	TTATAA	1 cut(s)	240
Psp6I	CCWGG	1 cut(s)	436
PspCI	CACGTG	1 cut(s)	425
PspFI	CCCAGC	1 cut(s)	772
PspGI	CCWGG	1 cut(s)	436
PspN4I	GGNNCC	1 cut(s)	420
PstI	CTGCAG	1 cut(s)	100
PvuII	CAGCTG	2 cut(s)	101, 265
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
RseI	CAYNNNNRTG	1 cut(s)	204
SaqAI	TTAA	1 cut(s)	783
SatI	GCNGC	3 cut(s)	93, 96, 99
Sau3AI	GATC	3 cut(s)	31, 78, 580
SchI	GAGTC	3 cut(s)	134, 482, 669
ScrFI	CCNGG	2 cut(s)	438, 513
SduI	GDGCHC	1 cut(s)	658
SexAI	ACCWGGT	1 cut(s)	436
SfaNI	GCATC	2 cut(s)	131, 334
SfcI	CTRYAG	2 cut(s)	96, 355
SmiMI	CAYNNNNRTG	1 cut(s)	204
SmlI	CTYRAG	4 cut(s)	183, 311, 711, 815
SmoI	CTYRAG	4 cut(s)	183, 311, 711, 815
Sse9I	AATT	3 cut(s)	54, 330, 389
SsiI	CCGC	3 cut(s)	250, 670, 742
SspMI	CTAG	2 cut(s)	477, 519
StyD4I	CCNGG	2 cut(s)	436, 511
TaaI	ACNGT	2 cut(s)	136, 748
TaiI	ACGT	1 cut(s)	427
TasI	AATT	3 cut(s)	54, 330, 389
TfiI	GAWTC	4 cut(s)	302, 320, 624, 809
Tru1I	TTAA	1 cut(s)	783
Tru9I	TTAA	1 cut(s)	783
TscAI	CASTG	2 cut(s)	346, 737
TseFI	GTSAC	2 cut(s)	275, 440
TseI	GCWGC	3 cut(s)	92, 95, 98
Tsp45I	GTSAC	2 cut(s)	275, 440
TspDTI	ATGAA	4 cut(s)	188, 315, 612, 756
TspRI	CASTG	2 cut(s)	346, 737
XagI	CCTNNNNNAGG	1 cut(s)	314
XapI	RAATTY	1 cut(s)	54
XceI	RCATGY	1 cut(s)	354
XmiI	GTMKAC	1 cut(s)	411
XmnI	GAANNNNTTC	1 cut(s)	195
XspI	CTAG	2 cut(s)	477, 519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.