Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001516

Physical Location & Seq

Genomic Coordinates Forward (+)

18477107 .. 18491385

Gene Structure 14279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30406

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4812 bp

ATGCCACAGAAGAAGGCGGGGTTACGCCTACAGTTTATTCTCGTAAAGAACCGGTATGTACATCTGACTGAGAAAGAAATGCAAAAACTGCAGGTGTGGTCTCAAATAATGCCTTACAGAGAGTCCTTCGCCTGGGCTATTGTTTCATTATTTGATAACAGCATTGGTGCAGCTTCTGGTGGGTCTGCTTCCCCAAGCAGTCCTCTTGCTCCTAGTATATCAGGTAGTTCTCATGAGGGTGTGTTTGAGCCTGGTGCTAAAGTCACATTAGATGGGAAGCTAGGCTATTCAAGTCGAAGCTCCGTCGTTGTCGAAATATCAAACTTAAACAAAGTTAAAGAAAGCTATACTGAGGACTCACTTCAGGATCCCAAACGCAAGGTTCATAAACCTGTGAAAGGCGTTTTGAGGCTGGAAATCGAGAAGCACCAGAATGACAATGTTGACCTGGAAAATTTATCAGAAAGTGGTAGTGTGACCAATGACTCTATTGATGATCGCATTAACGATTCCACGTTTGGGAAGCTCCCAAGTAATGGTTTGGATGGTCCTCAGGGTAGCAGTTCTAAGTGGAATTCTTTTGATACCAAAGAGATTTCTGGGAATGGATCAAGTTCTCATGGAAATCCAGTTACCGGTCCTGATGATTTTCAAGCTTTTGACTTCCGTACTACAACAAGAAACGAGCCTTTCTTGCAGCTTTTTCATTGTCTCTATGTATATCCCATGACTGTTAGTTTAAGTCGAAAGAGGAATTTGTTCATAAGGGTTGAACTTCGGGAGGATGATAATGATATTCGTGGACAGCCTTTAGAGGCAATGTATCCAAGGGAGCCAGGTGCATCACTACAGAAGTCGGCTCACACACAAGTGACTGTGGGGGCAAGGGTAGCATGCTACCATGATGAGATCAAACTTTCCCTCCCTGCTATGTGGACACCAACACATCATCTCTTGTTTACTTTTTTTCATGTTGATCTTCAAACAAAGTTGGAAGCACCAAAGCCTGTAGTAATTGGATACGCGTCACTTCCACTGTCCACACATGCACAGTTGCGATCTGAAATTTCATTGCCAATTATGAAAGAGTTGGTTCCACATTATCTTCAGGATATGGGCAGAGAGAGGTTGGATTATTTGGAAGATGGAAAGAATATCTTCAGATTGCGCTTAAGACTTTGTTCGTCATTATATCCGATCAATGAGCGAATAAGAGATTTTTTTCTTGAATATGATAGACACACTCTTCGAACAAGTGCACCTTGGGGTTCTGAACTTCTGGAGGCTATTAACAGTTTAAAGAATGTTGATTCCATTGCTCTGCTTCAGTTTCTCCATCCAATTTTGAACATGCTCCTCCATTTAATAGGCAATGGCGGAGAAACCCTCCAGGTTGCAGCTTTCAGAGCCATGGTTAATATCGTTACCCGGGTGCAGCAGGAGTCAGTTGATGATGCGGAAAGAAACCATTTCCTCGTCAACTATGTTGATTATGCTTTTGATGACTTTGGGGGTCGCCAACCACCTGTTTATCCTGGTTTGTCAACTGTTTGGGGAAGTTTGGCTCGTAGTAAGGCCAAAGGATACCGTGTTGGACCTGTGTATGATGATGTTTTGGCAATGGCTTGGTTTTTCCTTGAGCTAATTGTCAAGTCAATGGCATTGGAAAAGATGCGACTCTTCTATCATAATCTTCCATTAGGTGAAGACATTCCGCCTATGCAATTGAAAGAAGGTGTATTCAGATGCATAATGCAGTTGTATGATTGCCTACTAACTGAGGTGCACGAACGTTGTAAGAAGGGACTGGGCTTGGCAAAGCGTTTAAATAGCAGTTTGGCTTTCTTTTGTTATGATCTCTTGTCGATTATCGAACCTCGCCAAGTTTTTGAATTGGTGTCCTTATACCTTGACAAGTTTTCTGGGGTATGTCAATCAGTTTTGCATGATTGCAAACTCACATTTTTGCAAATCATTTGTGATCATGATCTTTTTGTGGAAATGCCTGGGAGAGACCCTTCTGATAGGAACTACCTCTCTTCTGTTTTGATCCAAGAGCTTTTTCTTACTTGGGATCATGATGATTTATCTTTGCGGGCAAAGGCCGCAAGAGTTTTAGTAGTCTTGTTGTGCAAGCATGAGTTTGATGCTCGATACCAGAAGCCTGAAGATAAATTATATATTGCCCAACTATATTTTCCACTTATCGGACAGATTCTAGATGAAATGCCAGTCTTTTACAATCTCAATGCTGTTGAAAAGCGTGAAGTCTTGGTTGCTATTTTACAAATTGTGCGGAACCTTGATGATGCTTCACTTGTCAAGGCATGGCAGCAGAGCATCGCTAGAACTAGATTATTCTTCAAACTCATGGAGGAATGCCTTGTTCTATTTGAGCACAGAAAACCTGCTGATGGCATGCTTATGGGTTCTAGTTCTCGAAGTCCTGTTGGTGATGGCCCTGCTTCTCCCAAGTATTCTGATAGACTTTCTCCTGCAATCAACAACTATCTGTCTGAGGCATCCCGACAAGAAGTCAGACCTCAAGGTACACCCGAAAATGGTTACCCATGGCAGAGAGTAAATTCTCAGTTAAGCTCTCCTAGCCAGCCATATTCCTTGAGAGAAGCTCTCGCTCAGGCACAATCTTCCAGGATTGGAGCTTCCGCTCAAGCACTAAGAGAATCTTTGCATCCAATATTGAGGCAAAAATTGGAGCTCTGGGAAGAAAACTTGAGTGCTTCTGTCAGTCTGCAGGTTTTGGAAATAACTGAGAAGTTTACCGTAATGGCGGCATCACATAGCATCGCTACCGACTACGGAAAATTTGATTGCGTCACAGCCATATTCATGAGCTTCTTCTCTCGAAATCAATCACTGACTTTCTGGAAATCATTGCTTCCTGTCTTCAACAGTGTCTTCAATCTTCATGGCGCAACTTTGATGTCAAGGGAAAATGACCGCTTCTTAAAGCAAGTCACTTTCCATCTTCTTCGACTTGCAGTGTTCCGAAATGATAATATCAGAAAAAGGGCTGTTACTGGGCTCCAGATACTCATGAGGAGTTCTTTCTACTACTTTATGCAAACAGCAAGATTGAGGGCCATGCTAATCATCACATTATCAGAGTTGATGTCTGATGTACAAGTGACTCAGATGAAGGCTGATGGAACACTAGAAGAGAGTGGTGAAGCACGGCGCCTTCGCAGATCACTGGAGGAAGTGGCAGATGCAGCTAAGAGCCCCAGTCTATTGAGAGAGTGTGGACTTCCTGAGAGTGCCTTGTTAGAAATTCCTGAAAAAATGACTGAAAATAGGTGGTCCTGGTCAGACGTGAAATTTCTTTCTGACAGTCTTCTTCTTGCTCTTGATGCCAGCTTGGAACATGCACTCCTGGGCTCTTTGATGACTATGGATAGATATGCAGCTGCAGAAAGCTTCTATAAGCTTGCTATGGCATTTGCCCCTGTCCCAGATCTTCATATAATGTGGTTACTTCATTTATGTGATGCACATCAAGAAATGCAGTCGTGGGCAGAATCTGCTCAGTGTGCTGTCGCTGTGGCTGGTATTGTAATGCAGGCTTTGGTGGCCAGAAATGATGGTGTTTGGAGCAAAGATCACATAAGTGCTCTACGTAAAATTTGTCCAATGGTCAGTAGTGAGATCAGCTCTGAGGCTGCTGCAGCTGAGGTAGAGGGATATGGTGCATCAAAACTTACTGTTGACTCTGCCGTGAAGTACCTACAACTCGCAAATAAGCTCTTTTCTCAAGCTGAACTTTTTCACTTCTGTGCAAGCATTCTGGAACTTGTTATTCCAGTTTATAAAAGCAGGCGGGCATATGGACAGCTGAGCAAATGTCACACAATGCTTACTAACATATATGAATCAATCCTTGAGCAGGAATCAAGCCCAATTCCATTCACTGATGCAACATACTATAGGGTGGGGTTTTATGGTGATAGATTTGGAAAACTGGACAGAAAGGAATATGTATACAGAGAGCCACGTGATGTAAGACTAGGTGACATAATGGAGAAACTTAGCCATATCTACGAGTCTAGGATGGATGGAAATCACACCTTACACATCATTCCGGATTCTAGGCAGGTAAAGGCAGATGAGTTGCAGCCTGGAGTATGCTATCTTCAGATAACTGCTGTTGATCCAGTCATGGAAGATGAAGATTTGGGAAGCAGGAGGGAGAGAATCTTTTCTCTTTCGACGGGAAGTGTTCGTGCGCGAGTCTTTGACCGCTTTTTGTTCGATACACCTTTTACGAAAAATGGAAAAACTCAAGGTGGATTGGAAGACCAGTGGAAGAGGCGGACTGTTCTTCAGACTGAAGGTTCCTTCCCAGCTCTTGTTAACAGGCTTGTAGTTACTAAATCCGAATCGCTTGAGTTCTCCCCTGTAGAAAATGCCATTGGAATGATTGAAACTCGGACGGCTGCTCTACGTAATGAACTTGAAGAGCCTCGCAGTTCTGAGGGGGATCAACTCCCACGTCTCCAGAGCCTACAGAGAATTCTTCAAGGAAGCGTTGCAGTTCAGGTCAACAGTGGTGTTCTAAGTGTGTGCACTGCATTCCTTTCCGGTGAACCAGCGACAAGGTTGCGGTCACAAGAATTGCAGCAACTCATTGCGGCGCTCCTTGAATTTATGGCTGTATGCAAGCGTGCCATCCGTGTACACTTCAGATTGATTGGCGAGGAAGACCAAGAATTCCACACACAGCTTGTGAATGGATTTCAATCTCTAACTGCTGAGTTATCTCATTATATCCCTGCCATCCTGTCCGAGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0006810 GO:0008064 GO:0008150 GO:0008360 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009958 GO:0009966 GO:0009987 GO:0010646 GO:0010928 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0017016 GO:0017048 GO:0019898 GO:0019899 GO:0022603 GO:0022604 GO:0023051 GO:0030832 GO:0031267 GO:0032535 GO:0032956 GO:0032970 GO:0033043 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051020 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0065007 GO:0065008 GO:0065009 GO:0070971 GO:0071840 GO:0071944 GO:0090066 GO:0098772 GO:0110053 GO:1902903

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DHR-2 DOCK-C2

Protein Analysis

1603

Amino Acids

181.22

Weight (kDa)

6.12

Isoelectric Point (pI)

52.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DOCK-C2	PF14429	233 - 402	2.2e-34	C2 domain in Dock180 and Zizimin proteins
DHR-2_Lobe_A	PF06920	1148 - 1301	5.8e-36	DHR-2, Lobe A
DHR-2_Lobe_B	PF20422	1369 - 1451	1.6e-22	DHR-2, Lobe B
DHR-2_Lobe_C	PF20421	1499 - 1595	2.3e-26	DHR-2, Lobe C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16340 AT4G16340
fragaria_vesca	FvH4_3g14770 FvH4_3g14770 FvH4_3g14770
malus_domestica	MD05G1229900.v1.1 MD05G1233200.v1.1 MD10G1209700.v1.1
prunus_persica	Prupe.3G108400_v2.0.a1 Prupe.4G132800_v2.0.a1
pyrus_communis	pycom05g21080 pycom05g21090 pycom10g17800 pycom10g17820
rosa_chinensis	RchiOBHm_Chr1g0327621 RchiOBHm_Chr3g0473981 RchiOBHm_Chr5g0024291 RchiOBHm_Chr5g0024301 RchiOBHm_Chr5g0024371 RchiOBHm_Chr5g0024381
rosa_laevigata	RLG00000029979 RLG00000032795 RLG00000036969
rosa_multiflora	Rmu_co8048528.1_g000001 Rmu_co8378897.1_g000002 Rmu_sc0005861.1_g000003 Rmu_sc0015218.1_g000005 Rmu_ssc0000042.1_g000009
rosa_roxburghii	Rroxscaffold_1G00054850 Rroxscaffold_1G00054890 Rroxscaffold_1G00055790 Rroxscaffold_1G00055850 Rroxscaffold_4G00322510
rosa_rugosa	Rorug01G0068800 Rorug05G0083000 Rorug05G0083100
rosa_samantha	Rh3AG187600 Rh3BG216300 Rh3CG212800 Rh5AG173700 Rh5BG170500 Rh5BG170900 Rh5BG171900 Rh5BG172000 Rh5CG186800 Rh5CG187500 Rh5CG187600 Rh5DG173100
rosa_wichuraiana	Rw0G000890 Rw3G017190 Rw5G015680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	3828
AarI	CACCTGC	1 cut(s)	82
Acc36I	ACCTGC	4 cut(s)	82, 2416, 2746, 4102
AccB1I	GGYRCC	1 cut(s)	3198
AccB7I	CCANNNNNTGG	1 cut(s)	536
AccBSI	CCGCTC	1 cut(s)	2669
AccI	GTMKAC	1 cut(s)	3999
AccII	CGCG	2 cut(s)	1025, 4246
AccIII	TCCGGA	1 cut(s)	4099
AclI	AACGTT	1 cut(s)	1792
AclWI	GGATC	7 cut(s)	362, 375, 616, 2044, 2082, 4163, 4506
AcoI	YGGCCR	1 cut(s)	3591
AcuI	CTGAAG	9 cut(s)	347, 1091, 1144, 1310, 2187, 4136, 4325, 4368, 4684
AcvI	CACGTG	1 cut(s)	4013
AcyI	GRCGYC	1 cut(s)	3199
AfaI	GTAC	6 cut(s)	60, 670, 2551, 3144, 3743, 4695
AfiI	CCNNNNNNNGG	9 cut(s)	132, 398, 519, 536, 635, 2207, 2414, 2561, 3904
AflII	CTTAAG	1 cut(s)	1171
AflIII	ACRYGT	1 cut(s)	1023
AgeI	ACCGGT	2 cut(s)	51, 635
AhdI	GACNNNNNGTC	1 cut(s)	2534
AjiI	CACGTC	2 cut(s)	3334, 4511
AjuI	GAANNNNNNNTTGG	6 cut(s)	2046, 2078, 2181, 2213, 4413, 4445
AleI	CACNNNNGTG	3 cut(s)	869, 3627, 3792
AloI	GAACNNNNNNTCC	2 cut(s)	3375, 3407
Alw21I	GWGCWC	6 cut(s)	1261, 1788, 2400, 2721, 3634, 4586
Alw26I	GTCTC	4 cut(s)	105, 716, 2007, 4517
Alw44I	GTGCAC	3 cut(s)	1257, 1784, 4582
AlwI	GGATC	7 cut(s)	362, 375, 616, 2044, 2082, 4163, 4506
AlwNI	CAGNNNCTG	2 cut(s)	176, 3542
Ama87I	CYCGRG	1 cut(s)	1428
Aor13HI	TCCGGA	1 cut(s)	4099
AoxI	GGCC	5 cut(s)	1575, 2103, 2458, 3102, 3591
ApaLI	GTGCAC	3 cut(s)	1257, 1784, 4582
ArsI	GACNNNNNNTTYG	2 cut(s)	1230, 1262
AsiGI	ACCGGT	2 cut(s)	51, 635
Asp700I	GAANNNNTTC	5 cut(s)	758, 1157, 1710, 3783, 4216
AspLEI	GCGC	5 cut(s)	1170, 2936, 3201, 4246, 4654
AspS9I	GGNCC	6 cut(s)	548, 638, 1595, 2459, 3102, 3321
AsuC2I	CCSGG	2 cut(s)	1429, 1430
AsuHPI	GGTGA	6 cut(s)	1715, 2465, 3200, 3974, 4040, 4613
AsuII	TTCGAA	1 cut(s)	1249
AvaI	CYCGRG	1 cut(s)	1428
AvaII	GGWCC	4 cut(s)	548, 638, 1595, 3321
AxyI	CCTNAGG	1 cut(s)	552
BaeGI	GKGCMC	3 cut(s)	1261, 1788, 4586
BalI	TGGCCA	1 cut(s)	3593
BamHI	GGATCC	1 cut(s)	367
BanI	GGYRCC	1 cut(s)	3198
BanII	GRGCYC	4 cut(s)	2721, 3048, 3245, 3401
BarI	GAAGNNNNNNTAC	2 cut(s)	4134, 4166
BbrPI	CACGTG	1 cut(s)	4013
BbsI	GAAGAC	6 cut(s)	1713, 2899, 2911, 3347, 4320, 4725
Bbv12I	GWGCWC	6 cut(s)	1261, 1788, 2400, 2721, 3634, 4586
BbvCI	CCTCAGC	1 cut(s)	3690
BceAI	ACGGC	3 cut(s)	3212, 3719, 4467
BcgI	CGANNNNNNTGC	2 cut(s)	4600, 4634
BciVI	GTATCC	3 cut(s)	834, 1013, 1577
BclI	TGATCA	1 cut(s)	1981
BcnI	CCSGG	2 cut(s)	1429, 1430
BcoDI	GTCTC	4 cut(s)	105, 716, 2007, 4517
BfoI	RGCGCY	2 cut(s)	3202, 4655
BfrI	CTTAAG	1 cut(s)	1171
BfuAI	ACCTGC	4 cut(s)	82, 2416, 2746, 4102
BfuI	GTATCC	3 cut(s)	834, 1013, 1577
BglII	AGATCT	1 cut(s)	3475
BlpI	GCTNAGC	1 cut(s)	3854
Bme18I	GGWCC	4 cut(s)	548, 638, 1595, 3321
BmeRI	GACNNNNNGTC	1 cut(s)	2534
BmeT110I	CYCGRG	1 cut(s)	1428
BmgBI	CACGTC	2 cut(s)	3334, 4511
BmgT120I	GGNCC	6 cut(s)	548, 638, 1595, 2459, 3102, 3321
BmiI	GGNNCC	7 cut(s)	369, 834, 1095, 2300, 3047, 3200, 4354
BmrI	ACTGGG	3 cut(s)	1817, 3051, 3240
BmuI	ACTGGG	3 cut(s)	1817, 3051, 3240
BpiI	GAAGAC	6 cut(s)	1713, 2899, 2911, 3347, 4320, 4725
BplI	GAGNNNNNCTC	8 cut(s)	1371, 1403, 2614, 2646, 2616, 2648, 3656, 3688
BpmI	CTGGAG	6 cut(s)	1301, 1373, 3032, 3236, 4158, 4499
Bpu10I	CCTNAGC	2 cut(s)	2637, 3690
Bpu1102I	GCTNAGC	1 cut(s)	3854
Bpu14I	TTCGAA	1 cut(s)	1249
BpuEI	CTTGAG	9 cut(s)	1658, 2529, 2641, 2655, 2755, 3756, 3920, 4284, 4424
BpuMI	CCSGG	2 cut(s)	1429, 1430
BsaAI	YACGTR	3 cut(s)	3638, 4013, 4463
BsaBI	GATNNNNATC	4 cut(s)	1986, 3513, 4077, 4756
BsaHI	GRCGYC	1 cut(s)	3199
BsaI	GGTCTC	2 cut(s)	105, 2007
BsaJI	CCNNGG	8 cut(s)	132, 827, 1262, 1410, 1428, 2006, 2570, 3394
BsaWI	WCCGGW	4 cut(s)	51, 635, 4099, 4598
BsaXI	ACNNNNNCTCC	4 cut(s)	906, 936, 3375, 3405
Bsc4I	CCNNNNNNNGG	9 cut(s)	132, 398, 519, 536, 635, 2207, 2414, 2561, 3904
Bse118I	RCCGGY	2 cut(s)	51, 635
Bse21I	CCTNAGG	1 cut(s)	552
Bse3DI	GCAATG	7 cut(s)	825, 1070, 1314, 1378, 1626, 2894, 4644
Bse8I	GATNNNNATC	4 cut(s)	1986, 3513, 4077, 4756
BseAI	TCCGGA	1 cut(s)	4099
BseDI	CCNNGG	8 cut(s)	132, 827, 1262, 1410, 1428, 2006, 2570, 3394
BseGI	GGATG	9 cut(s)	550, 790, 1336, 2522, 2692, 4074, 4078, 4686, 4794
BseJI	GATNNNNATC	4 cut(s)	1986, 3513, 4077, 4756
BseLI	CCNNNNNNNGG	9 cut(s)	132, 398, 519, 536, 635, 2207, 2414, 2561, 3904
BseMI	GCAATG	7 cut(s)	825, 1070, 1314, 1378, 1626, 2894, 4644
BseRI	GAGGAG	2 cut(s)	1346, 3076
BseSI	GKGCMC	3 cut(s)	1261, 1788, 4586
BseYI	CCCAGC	1 cut(s)	4360
BsgI	GTGCAG	2 cut(s)	189, 1454
Bsh1236I	CGCG	2 cut(s)	1025, 4246
BshFI	GGCC	5 cut(s)	1577, 2105, 2460, 3104, 3593
BshNI	GGYRCC	1 cut(s)	3198
BshTI	ACCGGT	2 cut(s)	51, 635
BsiHKAI	GWGCWC	6 cut(s)	1261, 1788, 2400, 2721, 3634, 4586
BsiHKCI	CYCGRG	1 cut(s)	1428
BsiSI	CCGG	5 cut(s)	52, 636, 1429, 4100, 4599
BslFI	GGGAC	2 cut(s)	1818, 3455
BslI	CCNNNNNNNGG	9 cut(s)	132, 398, 519, 536, 635, 2207, 2414, 2561, 3904
BsmAI	GTCTC	4 cut(s)	105, 716, 2007, 4517
BsmBI	CGTCTC	1 cut(s)	4517
BsmFI	GGGAC	2 cut(s)	1818, 3455
BsmI	GAATGC	3 cut(s)	2384, 3801, 4589
BsnI	GGCC	5 cut(s)	1577, 2105, 2460, 3104, 3593
Bso31I	GGTCTC	2 cut(s)	105, 2007
BsoBI	CYCGRG	1 cut(s)	1428
Bsp119I	TTCGAA	1 cut(s)	1249
Bsp1286I	GDGCHC	9 cut(s)	1261, 1788, 2400, 2721, 3048, 3245, 3401, 3634, 4586
Bsp13I	TCCGGA	1 cut(s)	4099
Bsp1407I	TGTACA	3 cut(s)	58, 3142, 4693
Bsp1720I	GCTNAGC	1 cut(s)	3854
Bsp19I	CCATGG	2 cut(s)	1410, 2570
BspANI	GGCC	5 cut(s)	1577, 2105, 2460, 3104, 3593
BspEI	TCCGGA	1 cut(s)	4099
BspFNI	CGCG	2 cut(s)	1025, 4246
BspHI	TCATGA	5 cut(s)	232, 1984, 2077, 2850, 3057
BspLI	GGNNCC	7 cut(s)	369, 834, 1095, 2300, 3047, 3200, 4354
BspMAI	CTGCAG	4 cut(s)	93, 2757, 3433, 3688
BspMI	ACCTGC	4 cut(s)	82, 2416, 2746, 4102
BspPI	GGATC	7 cut(s)	362, 375, 616, 2044, 2082, 4163, 4506
BspQI	GCTCTTC	1 cut(s)	4470
BspT104I	TTCGAA	1 cut(s)	1249
BspT107I	GGYRCC	1 cut(s)	3198
BspTI	CTTAAG	1 cut(s)	1171
BspTNI	GGTCTC	2 cut(s)	105, 2007
BsrBI	CCGCTC	1 cut(s)	2669
BsrDI	GCAATG	7 cut(s)	825, 1070, 1314, 1378, 1626, 2894, 4644
BsrFI	RCCGGY	2 cut(s)	51, 635
BsrGI	TGTACA	3 cut(s)	58, 3142, 4693
BssAI	RCCGGY	2 cut(s)	51, 635
BssECI	CCNNGG	8 cut(s)	132, 827, 1262, 1410, 1428, 2006, 2570, 3394
BssNAI	GTATAC	1 cut(s)	4000
BssNI	GRCGYC	1 cut(s)	3199
BssT1I	CCWWGG	4 cut(s)	827, 1262, 1410, 2570
Bst1107I	GTATAC	1 cut(s)	4000
Bst6I	CTCTTC	6 cut(s)	1251, 1685, 2044, 3174, 4319, 4470
BstACI	GRCGYC	1 cut(s)	3199
BstAFI	CTTAAG	1 cut(s)	1171
BstAPI	GCANNNNNTGC	2 cut(s)	88, 3542
BstAUI	TGTACA	3 cut(s)	58, 3142, 4693
BstBAI	YACGTR	3 cut(s)	3638, 4013, 4463
BstBI	TTCGAA	1 cut(s)	1249
BstDSI	CCRYGG	2 cut(s)	1410, 2570
BstEII	GGTNACC	1 cut(s)	2564
BstENI	CCTNNNNNAGG	2 cut(s)	396, 3902
BstF5I	GGATG	9 cut(s)	550, 790, 1336, 2522, 2692, 4074, 4078, 4686, 4794
BstFNI	CGCG	2 cut(s)	1025, 4246
BstH2I	RGCGCY	2 cut(s)	3202, 4655
BstHHI	GCGC	5 cut(s)	1170, 2936, 3201, 4246, 4654
BstMAI	GTCTC	4 cut(s)	105, 716, 2007, 4517
BstNSI	RCATGY	5 cut(s)	897, 1049, 1354, 2422, 3389
BstPI	GGTNACC	1 cut(s)	2564
BstSLI	GKGCMC	3 cut(s)	1261, 1788, 4586
BstSNI	TACGTA	2 cut(s)	3638, 4463
BstUI	CGCG	2 cut(s)	1025, 4246
BstV2I	GAAGAC	6 cut(s)	1713, 2899, 2911, 3347, 4320, 4725
BstX2I	RGATCY	2 cut(s)	367, 3475
BstYI	RGATCY	2 cut(s)	367, 3475
BstZ17I	GTATAC	1 cut(s)	4000
Bsu36I	CCTNAGG	1 cut(s)	552
BsuI	GTATCC	3 cut(s)	834, 1013, 1577
BsuRI	GGCC	5 cut(s)	1577, 2105, 2460, 3104, 3593
BtgI	CCRYGG	2 cut(s)	1410, 2570
BtgZI	GCGATG	2 cut(s)	2326, 2791
BtrI	CACGTC	2 cut(s)	3334, 4511
BtsCI	GGATG	9 cut(s)	550, 790, 1336, 2522, 2692, 4074, 4078, 4686, 4794
BtsI	GCAGTG	2 cut(s)	3009, 4584
BveI	ACCTGC	4 cut(s)	82, 2416, 2746, 4102
CaiI	CAGNNNCTG	2 cut(s)	176, 3542
CciI	TCATGA	5 cut(s)	232, 1984, 2077, 2850, 3057
CfoI	GCGC	5 cut(s)	1170, 2936, 3201, 4246, 4654
Cfr10I	RCCGGY	2 cut(s)	51, 635
Cfr13I	GGNCC	6 cut(s)	548, 638, 1595, 2459, 3102, 3321
Cfr9I	CCCGGG	1 cut(s)	1428
CseI	GACGC	2 cut(s)	1014, 2824
Csp6I	GTAC	6 cut(s)	59, 669, 2550, 3143, 3742, 4694
CspAI	ACCGGT	2 cut(s)	51, 635
CviQI	GTAC	6 cut(s)	59, 669, 2550, 3143, 3742, 4694
DinI	GGCGCC	1 cut(s)	3200
DraI	TTTAAA	2 cut(s)	1299, 1827
DriI	GACNNNNNGTC	1 cut(s)	2534
EaeI	YGGCCR	1 cut(s)	3591
Eam1104I	CTCTTC	6 cut(s)	1251, 1685, 2044, 3174, 4319, 4470
Eam1105I	GACNNNNNGTC	1 cut(s)	2534
EarI	CTCTTC	6 cut(s)	1251, 1685, 2044, 3174, 4319, 4470
EciI	GGCGGA	3 cut(s)	1392, 1704, 4345
Ecl136II	GAGCTC	1 cut(s)	2719
Eco105I	TACGTA	2 cut(s)	3638, 4463
Eco130I	CCWWGG	4 cut(s)	827, 1262, 1410, 2570
Eco24I	GRGCYC	4 cut(s)	2721, 3048, 3245, 3401
Eco31I	GGTCTC	2 cut(s)	105, 2007
Eco47I	GGWCC	4 cut(s)	548, 638, 1595, 3321
Eco53kI	GAGCTC	1 cut(s)	2719
Eco57I	CTGAAG	9 cut(s)	347, 1091, 1144, 1310, 2187, 4136, 4325, 4368, 4684
Eco72I	CACGTG	1 cut(s)	4013
Eco81I	CCTNAGG	1 cut(s)	552
Eco88I	CYCGRG	1 cut(s)	1428
Eco91I	GGTNACC	1 cut(s)	2564
EcoICRI	GAGCTC	1 cut(s)	2719
EcoNI	CCTNNNNNAGG	2 cut(s)	396, 3902
EcoO65I	GGTNACC	1 cut(s)	2564
EcoRI	GAATTC	3 cut(s)	574, 4530, 4727
EcoT14I	CCWWGG	4 cut(s)	827, 1262, 1410, 2570
EcoT22I	ATGCAT	1 cut(s)	1751
EcoT38I	GRGCYC	4 cut(s)	2721, 3048, 3245, 3401
EgeI	GGCGCC	1 cut(s)	3200
EheI	GGCGCC	1 cut(s)	3200
ErhI	CCWWGG	4 cut(s)	827, 1262, 1410, 2570
Esp3I	CGTCTC	1 cut(s)	4517
FalI	AAGNNNNNCTT	8 cut(s)	1142, 1174, 1246, 1278, 2671, 2703, 3765, 3797
FaqI	GGGAC	2 cut(s)	1818, 3455
FauI	CCCGC	3 cut(s)	10, 2088, 3831
FauNDI	CATATG	1 cut(s)	3844
FbaI	TGATCA	1 cut(s)	1981
FblI	GTMKAC	1 cut(s)	3999
FokI	GGATG	9 cut(s)	557, 797, 1323, 2509, 2679, 4081, 4085, 4673, 4781
FriOI	GRGCYC	4 cut(s)	2721, 3048, 3245, 3401
GlaI	GCGC	5 cut(s)	1169, 2935, 3200, 4245, 4653
GsaI	CCCAGC	1 cut(s)	4364
GsuI	CTGGAG	6 cut(s)	1301, 1373, 3032, 3236, 4158, 4499
HaeII	RGCGCY	2 cut(s)	3202, 4655
HaeIII	GGCC	5 cut(s)	1577, 2105, 2460, 3104, 3593
HapII	CCGG	5 cut(s)	52, 636, 1429, 4100, 4599
HgaI	GACGC	2 cut(s)	1014, 2824
HhaI	GCGC	5 cut(s)	1170, 2936, 3201, 4246, 4654
Hin1I	GRCGYC	1 cut(s)	3199
Hin6I	GCGC	5 cut(s)	1168, 2934, 3199, 4244, 4652
HinP1I	GCGC	5 cut(s)	1168, 2934, 3199, 4244, 4652
HincII	GTYRAC	6 cut(s)	445, 1480, 1545, 3727, 4372, 4561
HindII	GTYRAC	6 cut(s)	445, 1480, 1545, 3727, 4372, 4561
HindIII	AAGCTT	3 cut(s)	654, 3436, 3446
HpaI	GTTAAC	1 cut(s)	4372
HpaII	CCGG	5 cut(s)	52, 636, 1429, 4100, 4599
HphI	GGTGA	6 cut(s)	1715, 2465, 3200, 3974, 4040, 4613
Hpy99I	CGWCG	2 cut(s)	308, 4231
HpyAV	CCTTC	9 cut(s)	7, 136, 1727, 1795, 2028, 3154, 3212, 4343, 4366
HpyCH4IV	ACGT	7 cut(s)	515, 1792, 3333, 3637, 4012, 4462, 4510
HpySE526I	ACGT	7 cut(s)	515, 1792, 3333, 3637, 4012, 4462, 4510
Hsp92I	GRCGYC	1 cut(s)	3199
HspAI	GCGC	5 cut(s)	1168, 2934, 3199, 4244, 4652
KasI	GGCGCC	1 cut(s)	3198
Kpn2I	TCCGGA	1 cut(s)	4099
Ksp22I	TGATCA	1 cut(s)	1981
KspAI	GTTAAC	1 cut(s)	4372
LguI	GCTCTTC	1 cut(s)	4470
MaeII	ACGT	7 cut(s)	515, 1792, 3333, 3637, 4012, 4462, 4510
MbiI	CCGCTC	1 cut(s)	2669
MfeI	CAATTG	1 cut(s)	1724
MflI	RGATCY	2 cut(s)	367, 3475
MhlI	GDGCHC	9 cut(s)	1261, 1788, 2400, 2721, 3048, 3245, 3401, 3634, 4586
MlsI	TGGCCA	1 cut(s)	3593
MluI	ACGCGT	1 cut(s)	1023
MluNI	TGGCCA	1 cut(s)	3593
Mly113I	GGCGCC	1 cut(s)	3199
MlyI	GAGTC	9 cut(s)	131, 350, 479, 1451, 1671, 3145, 3722, 4070, 4257
MmeI	TCCRAC	3 cut(s)	972, 1110, 1573
Mox20I	TGGCCA	1 cut(s)	3593
Mph1103I	ATGCAT	1 cut(s)	1751
MroI	TCCGGA	1 cut(s)	4099
MroXI	GAANNNNTTC	5 cut(s)	758, 1157, 1710, 3783, 4216
MscI	TGGCCA	1 cut(s)	3593
MslI	CAYNNNNRTG	9 cut(s)	237, 432, 869, 2423, 2849, 3504, 3627, 3792, 4433
Msp20I	TGGCCA	1 cut(s)	3593
MspA1I	CMGCKG	3 cut(s)	3428, 3689, 3853
MspCI	CTTAAG	1 cut(s)	1171
MspI	CCGG	5 cut(s)	52, 636, 1429, 4100, 4599
MunI	CAATTG	1 cut(s)	1724
Mva1269I	GAATGC	3 cut(s)	2384, 3801, 4589
MvnI	CGCG	2 cut(s)	1025, 4246
NarI	GGCGCC	1 cut(s)	3199
NciI	CCSGG	2 cut(s)	1429, 1430
NcoI	CCATGG	2 cut(s)	1410, 2570
NdeI	CATATG	1 cut(s)	3844
NlaIV	GGNNCC	7 cut(s)	369, 834, 1095, 2300, 3047, 3200, 4354
NsiI	ATGCAT	1 cut(s)	1751
NspI	RCATGY	5 cut(s)	897, 1049, 1354, 2422, 3389
NspV	TTCGAA	1 cut(s)	1249
OliI	CACNNNNGTG	3 cut(s)	869, 3627, 3792
PaeI	GCATGC	2 cut(s)	897, 2422
PagI	TCATGA	5 cut(s)	232, 1984, 2077, 2850, 3057
PaqCI	CACCTGC	1 cut(s)	82
PciSI	GCTCTTC	1 cut(s)	4470
PctI	GAATGC	3 cut(s)	2384, 3801, 4589
PdmI	GAANNNNTTC	5 cut(s)	758, 1157, 1710, 3783, 4216
PflMI	CCANNNNNTGG	1 cut(s)	536
PfoI	TCCNGGA	1 cut(s)	2651
PinAI	ACCGGT	2 cut(s)	51, 635
PleI	GAGTC	9 cut(s)	130, 350, 479, 1450, 1671, 3145, 3722, 4069, 4256
PluTI	GGCGCC	1 cut(s)	3202
PmaCI	CACGTG	1 cut(s)	4013
PmlI	CACGTG	1 cut(s)	4013
PpsI	GAGTC	9 cut(s)	130, 350, 479, 1450, 1671, 3145, 3722, 4069, 4256
Ppu21I	YACGTR	3 cut(s)	3638, 4013, 4463
PsiI	TTATAA	1 cut(s)	3828
Psp124BI	GAGCTC	1 cut(s)	2721
Psp1406I	AACGTT	1 cut(s)	1792
PspCI	CACGTG	1 cut(s)	4013
PspEI	GGTNACC	1 cut(s)	2564
PspFI	CCCAGC	1 cut(s)	4360
PspN4I	GGNNCC	7 cut(s)	369, 834, 1095, 2300, 3047, 3200, 4354
PspPI	GGNCC	6 cut(s)	548, 638, 1595, 2459, 3102, 3321
PstI	CTGCAG	4 cut(s)	93, 2757, 3433, 3688
PstNI	CAGNNNCTG	2 cut(s)	176, 3542
PsuI	RGATCY	2 cut(s)	367, 3475
PvuII	CAGCTG	3 cut(s)	3428, 3689, 3853
RsaI	GTAC	6 cut(s)	60, 670, 2551, 3144, 3743, 4695
RsaNI	GTAC	6 cut(s)	59, 669, 2550, 3143, 3742, 4694
RseI	CAYNNNNRTG	9 cut(s)	237, 432, 869, 2423, 2849, 3504, 3627, 3792, 4433
SacI	GAGCTC	1 cut(s)	2721
SapI	GCTCTTC	1 cut(s)	4470
Sau96I	GGNCC	6 cut(s)	548, 638, 1595, 2459, 3102, 3321
SchI	GAGTC	9 cut(s)	131, 350, 479, 1451, 1671, 3145, 3722, 4070, 4257
SduI	GDGCHC	9 cut(s)	1261, 1788, 2400, 2721, 3048, 3245, 3401, 3634, 4586
SfoI	GGCGCC	1 cut(s)	3200
SfuI	TTCGAA	1 cut(s)	1249
SinI	GGWCC	4 cut(s)	548, 638, 1595, 3321
SmaI	CCCGGG	1 cut(s)	1430
SmiMI	CAYNNNNRTG	9 cut(s)	237, 432, 869, 2423, 2849, 3504, 3627, 3792, 4433
SnaBI	TACGTA	2 cut(s)	3638, 4463
SphI	GCATGC	2 cut(s)	897, 2422
SspDI	GGCGCC	1 cut(s)	3198
SspI	AATATT	1 cut(s)	2700
SstI	GAGCTC	1 cut(s)	2721
StyI	CCWWGG	4 cut(s)	827, 1262, 1410, 2570
TaiI	ACGT	7 cut(s)	518, 1795, 3336, 3640, 4015, 4465, 4513
TatI	WGTACW	3 cut(s)	58, 3142, 4693
TauI	GCSGC	3 cut(s)	2108, 2795, 4652
TspGWI	ACGGA	4 cut(s)	292, 656, 2835, 4679
TspMI	CCCGGG	1 cut(s)	1428
Van91I	CCANNNNNTGG	1 cut(s)	536
Vha464I	CTTAAG	1 cut(s)	1171
VneI	GTGCAC	3 cut(s)	1257, 1784, 4582
VpaK11BI	GGWCC	4 cut(s)	548, 638, 1595, 3321
XagI	CCTNNNNNAGG	2 cut(s)	396, 3902
XbaI	TCTAGA	1 cut(s)	2218
XceI	RCATGY	5 cut(s)	897, 1049, 1354, 2422, 3389
XmaI	CCCGGG	1 cut(s)	1428
XmiI	GTMKAC	1 cut(s)	3999
XmnI	GAANNNNTTC	5 cut(s)	758, 1157, 1710, 3783, 4216
Zsp2I	ATGCAT	1 cut(s)	1751

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.