Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8048528.1

Orthogroup ID

OG0001516

Physical Location & Seq

Genomic Coordinates Forward (+)

3 .. 559

Gene Structure 557 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8048528.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 557 bp

atggtcagtagtgagatcagctctgaggctgctgcagctgaggtagagggatatggtgcatcaaaacttactgttgactctgccgtgaagtacctacaacttgcaaataagctcttttctcaagctgaactttttcacttctgtgcaagcattctggaacttgttattccagtttataaaagcaggcgggcatatggacagctgagcaaatgtcacacaatgcttactaacatatatgaatcaatccttgagcaggaatcaagcccaattccattcactgatgcaacatactatagggtggggttttatggtgatagatttggaaaactggacagaaaagaatatgtatacagggagccacgtgatgtaagattaggtgacataatggagaaacttagccatatctacgagtctaggatggatggaaatcacaccttacacatcattccggattctaggcaggtaaaggcagatgagttgcagcctggagtatgctatcttcagataactgctgttgatccagtcatggaagatgaagatttgggaagcagaaggga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0006810 GO:0008064 GO:0008150 GO:0008360 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009958 GO:0009966 GO:0009987 GO:0010646 GO:0010928 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0017016 GO:0017048 GO:0019898 GO:0019899 GO:0022603 GO:0022604 GO:0023051 GO:0030832 GO:0031267 GO:0032535 GO:0032956 GO:0032970 GO:0033043 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051020 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0065007 GO:0065008 GO:0065009 GO:0070971 GO:0071840 GO:0071944 GO:0090066 GO:0098772 GO:0110053 GO:1902903

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DHR-2 DOCK-C2

Protein Analysis

185

Amino Acids

21.04

Weight (kDa)

5.27

Isoelectric Point (pI)

49.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16340 AT4G16340
fragaria_vesca	FvH4_3g14770 FvH4_3g14770 FvH4_3g14770
malus_domestica	MD05G1229900.v1.1 MD05G1233200.v1.1 MD10G1209700.v1.1
prunus_persica	Prupe.3G108400_v2.0.a1 Prupe.4G132800_v2.0.a1
pyrus_communis	pycom05g21080 pycom05g21090 pycom10g17800 pycom10g17820
rosa_chinensis	RchiOBHm_Chr1g0327621 RchiOBHm_Chr3g0473981 RchiOBHm_Chr5g0024291 RchiOBHm_Chr5g0024301 RchiOBHm_Chr5g0024371 RchiOBHm_Chr5g0024381
rosa_laevigata	RLG00000029979 RLG00000032795 RLG00000036969
rosa_multiflora	Rmu_co8048528.1_g000001 Rmu_co8378897.1_g000002 Rmu_sc0005861.1_g000003 Rmu_sc0015218.1_g000005 Rmu_ssc0000042.1_g000009
rosa_roxburghii	Rroxscaffold_1G00054850 Rroxscaffold_1G00054890 Rroxscaffold_1G00055790 Rroxscaffold_1G00055850 Rroxscaffold_4G00322510
rosa_rugosa	Rorug01G0068800 Rorug05G0083000 Rorug05G0083100
rosa_samantha	Rh3AG187600 Rh3BG216300 Rh3CG212800 Rh5AG173700 Rh5BG170500 Rh5BG170900 Rh5BG171900 Rh5BG172000 Rh5CG186800 Rh5CG187500 Rh5CG187600 Rh5DG173100
rosa_wichuraiana	Rw0G000890 Rw3G017190 Rw5G015680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	177
Acc36I	ACCTGC	1 cut(s)	451
AccI	GTMKAC	1 cut(s)	348
AccIII	TCCGGA	1 cut(s)	448
AciI	CCGC	1 cut(s)	187
AclWI	GGATC	1 cut(s)	512
AcuI	CTGAAG	1 cut(s)	485
AcvI	CACGTG	1 cut(s)	362
AfaI	GTAC	1 cut(s)	92
AfiI	CCNNNNNNNGG	1 cut(s)	253
AjnI	CCWGG	1 cut(s)	484
AleI	CACNNNNGTG	1 cut(s)	141
AluBI	AGCT	5 cut(s)	21, 38, 112, 125, 202
AluI	AGCT	5 cut(s)	21, 38, 112, 125, 202
AlwI	GGATC	1 cut(s)	512
Aor13HI	TCCGGA	1 cut(s)	448
ApeKI	GCWGC	4 cut(s)	29, 32, 35, 481
Asp700I	GAANNNNTTC	1 cut(s)	132
AsuHPI	GGTGA	2 cut(s)	323, 389
BarI	GAAGNNNNNNTAC	2 cut(s)	483, 515
BbrPI	CACGTG	1 cut(s)	362
BbvCI	CCTCAGC	1 cut(s)	39
BbvI	GCAGC	4 cut(s)	16, 19, 47, 493
BccI	CCATC	2 cut(s)	412, 416
BceAI	ACGGC	1 cut(s)	68
BciT130I	CCWGG	1 cut(s)	486
BfaI	CTAG	2 cut(s)	414, 456
BfmI	CTRYAG	2 cut(s)	33, 292
BfuAI	ACCTGC	1 cut(s)	451
BisI	GCNGC	4 cut(s)	30, 33, 36, 482
BlpI	GCTNAGC	1 cut(s)	203
BlsI	GCNGC	4 cut(s)	31, 34, 37, 483
Bme1390I	CCNGG	1 cut(s)	486
BmiI	GGNNCC	1 cut(s)	357
BmrFI	CCNGG	1 cut(s)	486
BmsI	GCATC	2 cut(s)	68, 271
BplI	GAGNNNNNCTC	1 cut(s)	37
BpmI	CTGGAG	1 cut(s)	507
Bpu10I	CCTNAGC	1 cut(s)	39
Bpu1102I	GCTNAGC	1 cut(s)	203
BpuEI	CTTGAG	2 cut(s)	105, 269
BsaAI	YACGTR	1 cut(s)	362
BsaBI	GATNNNNATC	1 cut(s)	426
BsaWI	WCCGGW	1 cut(s)	448
Bsc4I	CCNNNNNNNGG	1 cut(s)	253
Bse1I	ACTGG	3 cut(s)	170, 333, 521
Bse8I	GATNNNNATC	1 cut(s)	426
BseAI	TCCGGA	1 cut(s)	448
BseBI	CCWGG	1 cut(s)	486
BseGI	GGATG	2 cut(s)	423, 427
BseJI	GATNNNNATC	1 cut(s)	426
BseLI	CCNNNNNNNGG	1 cut(s)	253
BseMII	CTCAG	3 cut(s)	15, 30, 194
BseNI	ACTGG	3 cut(s)	170, 333, 521
BseXI	GCAGC	4 cut(s)	16, 19, 47, 493
BsiSI	CCGG	1 cut(s)	449
BslI	CCNNNNNNNGG	1 cut(s)	253
BsmI	GAATGC	1 cut(s)	150
Bsp13I	TCCGGA	1 cut(s)	448
Bsp143I	GATC	2 cut(s)	15, 517
Bsp1720I	GCTNAGC	1 cut(s)	203
BspACI	CCGC	1 cut(s)	187
BspCNI	CTCAG	3 cut(s)	16, 31, 195
BspEI	TCCGGA	1 cut(s)	448
BspLI	GGNNCC	1 cut(s)	357
BspMAI	CTGCAG	1 cut(s)	37
BspMI	ACCTGC	1 cut(s)	451
BspPI	GGATC	1 cut(s)	512
BsrI	ACTGG	3 cut(s)	170, 333, 521
BssMI	GATC	2 cut(s)	15, 517
BssNAI	GTATAC	1 cut(s)	349
Bst1107I	GTATAC	1 cut(s)	349
Bst2UI	CCWGG	1 cut(s)	486
Bst4CI	ACNGT	1 cut(s)	73
BstBAI	YACGTR	1 cut(s)	362
BstC8I	GCNNGC	3 cut(s)	148, 185, 189
BstDEI	CTNAG	4 cut(s)	24, 39, 203, 395
BstENI	CCTNNNNNAGG	1 cut(s)	251
BstF5I	GGATG	2 cut(s)	423, 427
BstKTI	GATC	2 cut(s)	18, 520
BstMBI	GATC	2 cut(s)	15, 517
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstNI	CCWGG	1 cut(s)	486
BstSCI	CCNGG	1 cut(s)	484
BstSFI	CTRYAG	2 cut(s)	33, 292
BstV1I	GCAGC	4 cut(s)	16, 19, 47, 493
BstZ17I	GTATAC	1 cut(s)	349
BtsCI	GGATG	2 cut(s)	423, 427
BtsIMutI	CAGTG	1 cut(s)	276
BveI	ACCTGC	1 cut(s)	451
Cac8I	GCNNGC	3 cut(s)	148, 185, 189
Csp6I	GTAC	1 cut(s)	91
CviAII	CATG	1 cut(s)	526
CviQI	GTAC	1 cut(s)	91
DdeI	CTNAG	4 cut(s)	24, 39, 203, 395
DpnI	GATC	2 cut(s)	17, 519
DpnII	GATC	2 cut(s)	15, 517
Eco57I	CTGAAG	1 cut(s)	485
Eco72I	CACGTG	1 cut(s)	362
EcoNI	CCTNNNNNAGG	1 cut(s)	251
EcoRII	CCWGG	1 cut(s)	484
FaeI	CATG	1 cut(s)	529
FalI	AAGNNNNNCTT	2 cut(s)	114, 146
FatI	CATG	1 cut(s)	525
FauI	CCCGC	1 cut(s)	180
FauNDI	CATATG	1 cut(s)	193
FblI	GTMKAC	1 cut(s)	348
Fnu4HI	GCNGC	4 cut(s)	30, 33, 36, 482
FokI	GGATG	2 cut(s)	430, 434
Fsp4HI	GCNGC	4 cut(s)	30, 33, 36, 482
FspBI	CTAG	2 cut(s)	414, 456
GluI	GCNGC	4 cut(s)	30, 33, 36, 482
GsuI	CTGGAG	1 cut(s)	507
HapII	CCGG	1 cut(s)	449
Hin1II	CATG	1 cut(s)	529
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HinfI	GANTC	5 cut(s)	77, 239, 257, 410, 452
HpaII	CCGG	1 cut(s)	449
HphI	GGTGA	2 cut(s)	323, 389
Hpy166II	GTNNAC	2 cut(s)	76, 349
Hpy188I	TCNGA	2 cut(s)	25, 504
Hpy188III	TCNNGA	2 cut(s)	155, 449
Hpy8I	GTNNAC	2 cut(s)	76, 349
HpyAV	CCTTC	1 cut(s)	546
HpyCH4III	ACNGT	1 cut(s)	73
HpyCH4IV	ACGT	1 cut(s)	361
HpyCH4V	TGCA	6 cut(s)	35, 59, 104, 146, 284, 481
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
HpyF3I	CTNAG	4 cut(s)	24, 39, 203, 395
HpySE526I	ACGT	1 cut(s)	361
Hsp92II	CATG	1 cut(s)	529
Kpn2I	TCCGGA	1 cut(s)	448
Kzo9I	GATC	2 cut(s)	15, 517
LmnI	GCTCC	1 cut(s)	355
Lsp1109I	GCAGC	4 cut(s)	16, 19, 47, 493
LweI	GCATC	2 cut(s)	68, 271
MaeI	CTAG	2 cut(s)	414, 456
MaeII	ACGT	1 cut(s)	361
MaeIII	GTNAC	2 cut(s)	212, 377
MalI	GATC	2 cut(s)	17, 519
MboI	GATC	2 cut(s)	15, 517
MboII	GAAGA	3 cut(s)	491, 542, 548
MluCI	AATT	1 cut(s)	267
MlyI	GAGTC	2 cut(s)	71, 419
MnlI	CCTC	3 cut(s)	19, 34, 40
MroI	TCCGGA	1 cut(s)	448
MroXI	GAANNNNTTC	1 cut(s)	132
MslI	CAYNNNNRTG	1 cut(s)	141
MspA1I	CMGCKG	2 cut(s)	38, 202
MspI	CCGG	1 cut(s)	449
MspR9I	CCNGG	1 cut(s)	486
Mva1269I	GAATGC	1 cut(s)	150
MvaI	CCWGG	1 cut(s)	486
MwoI	GCNNNNNNNGC	1 cut(s)	35
NdeI	CATATG	1 cut(s)	193
NdeII	GATC	2 cut(s)	15, 517
NlaIII	CATG	1 cut(s)	529
NlaIV	GGNNCC	1 cut(s)	357
NmuCI	GTSAC	2 cut(s)	212, 377
OliI	CACNNNNGTG	1 cut(s)	141
PctI	GAATGC	1 cut(s)	150
PdmI	GAANNNNTTC	1 cut(s)	132
PfeI	GAWTC	3 cut(s)	239, 257, 452
PkrI	GCNGC	4 cut(s)	31, 34, 37, 483
PleI	GAGTC	2 cut(s)	71, 418
PmaCI	CACGTG	1 cut(s)	362
PmlI	CACGTG	1 cut(s)	362
PpsI	GAGTC	2 cut(s)	71, 418
Ppu21I	YACGTR	1 cut(s)	362
PsiI	TTATAA	1 cut(s)	177
Psp6I	CCWGG	1 cut(s)	484
PspCI	CACGTG	1 cut(s)	362
PspGI	CCWGG	1 cut(s)	484
PspN4I	GGNNCC	1 cut(s)	357
PstI	CTGCAG	1 cut(s)	37
PvuII	CAGCTG	2 cut(s)	38, 202
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
RseI	CAYNNNNRTG	1 cut(s)	141
SatI	GCNGC	4 cut(s)	30, 33, 36, 482
Sau3AI	GATC	2 cut(s)	15, 517
SchI	GAGTC	2 cut(s)	71, 419
ScrFI	CCNGG	1 cut(s)	486
SfaNI	GCATC	2 cut(s)	68, 271
SfcI	CTRYAG	2 cut(s)	33, 292
SmiMI	CAYNNNNRTG	1 cut(s)	141
SmlI	CTYRAG	2 cut(s)	120, 248
SmoI	CTYRAG	2 cut(s)	120, 248
Sse9I	AATT	1 cut(s)	267
SsiI	CCGC	1 cut(s)	187
SspMI	CTAG	2 cut(s)	414, 456
StyD4I	CCNGG	1 cut(s)	484
TaaI	ACNGT	1 cut(s)	73
TaiI	ACGT	1 cut(s)	364
TasI	AATT	1 cut(s)	267
TfiI	GAWTC	3 cut(s)	239, 257, 452
TscAI	CASTG	1 cut(s)	283
TseFI	GTSAC	2 cut(s)	212, 377
TseI	GCWGC	4 cut(s)	29, 32, 35, 481
Tsp45I	GTSAC	2 cut(s)	212, 377
TspDTI	ATGAA	2 cut(s)	252, 549
TspRI	CASTG	1 cut(s)	283
XagI	CCTNNNNNAGG	1 cut(s)	251
XmiI	GTMKAC	1 cut(s)	348
XmnI	GAANNNNTTC	1 cut(s)	132
XspI	CTAG	2 cut(s)	414, 456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.