Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001516

Physical Location & Seq

Genomic Coordinates Reverse (-)

18035269 .. 18040796

Gene Structure 5528 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG172000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGATAGATATGCAGCTGCAGAAAGCTTCTATAAGCTTGCTATGGCATTTGCCCCTGTCCCAGATCTTCATATAATGTGGTTACTTCATTTATGTGATGCACATCAAGATATGCAGTCGTGGGCAGAATCTGCTCAGTGTGCTGTCGCTGTGGCTGGTATTGTAATGCAGGCTTTGGTGGCCAGAAATGATGGTGTTTGGAGCAAAGATCTCATAACTGCTCTACGTAAAACTTGTCCAATGGTCAGTAGTGAGATCAGCTCTGAGGCTGCTGCAGCTGAGGTAGAGGGATATGGTGCATCAAAACTTACTGTTGACTCTGCCGTGAAGTACCTACAACTCGCAAATAAGCTCTTTTCTCAAGCTGAACTTTTTCATTTCTGTGCAAGCATTCTGGAACTTGTTATTCCAGTTTATAAAAGCAGGCGGGCATATGGACAGCTGAGCAAATGTTACACAATGCTTACTAATATATATGAATCAATCCTTGAGCAGGAATCAAGCCCAATTCCATTCACTGATGCAACATACTATAGGGTAGGGGTTTTATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0006810 GO:0008064 GO:0008150 GO:0008360 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009958 GO:0009966 GO:0009987 GO:0010646 GO:0010928 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0017016 GO:0017048 GO:0019898 GO:0019899 GO:0022603 GO:0022604 GO:0023051 GO:0030832 GO:0031267 GO:0032535 GO:0032956 GO:0032970 GO:0033043 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051020 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0065007 GO:0065008 GO:0065009 GO:0070971 GO:0071840 GO:0071944 GO:0090066 GO:0098772 GO:0110053 GO:1902903

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DHR-2 DOCK-C2

Protein Analysis

184

Amino Acids

20.45

Weight (kDa)

5.32

Isoelectric Point (pI)

46.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHR-2_Lobe_A	PF06920	11 - 164	7.8e-36	DHR-2, Lobe A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16340 AT4G16340
fragaria_vesca	FvH4_3g14770 FvH4_3g14770 FvH4_3g14770
malus_domestica	MD05G1229900.v1.1 MD05G1233200.v1.1 MD10G1209700.v1.1
prunus_persica	Prupe.3G108400_v2.0.a1 Prupe.4G132800_v2.0.a1
pyrus_communis	pycom05g21080 pycom05g21090 pycom10g17800 pycom10g17820
rosa_chinensis	RchiOBHm_Chr1g0327621 RchiOBHm_Chr3g0473981 RchiOBHm_Chr5g0024291 RchiOBHm_Chr5g0024301 RchiOBHm_Chr5g0024371 RchiOBHm_Chr5g0024381
rosa_laevigata	RLG00000029979 RLG00000032795 RLG00000036969
rosa_multiflora	Rmu_co8048528.1_g000001 Rmu_co8378897.1_g000002 Rmu_sc0005861.1_g000003 Rmu_sc0015218.1_g000005 Rmu_ssc0000042.1_g000009
rosa_roxburghii	Rroxscaffold_1G00054850 Rroxscaffold_1G00054890 Rroxscaffold_1G00055790 Rroxscaffold_1G00055850 Rroxscaffold_4G00322510
rosa_rugosa	Rorug01G0068800 Rorug05G0083000 Rorug05G0083100
rosa_samantha	Rh3AG187600 Rh3BG216300 Rh3CG212800 Rh5AG173700 Rh5BG170500 Rh5BG170900 Rh5BG171900 Rh5BG172000 Rh5CG186800 Rh5CG187500 Rh5CG187600 Rh5DG173100
rosa_wichuraiana	Rw0G000890 Rw3G017190 Rw5G015680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	417
AciI	CCGC	1 cut(s)	427
AcoI	YGGCCR	1 cut(s)	180
AfaI	GTAC	1 cut(s)	332
AfiI	CCNNNNNNNGG	1 cut(s)	493
AluBI	AGCT	8 cut(s)	17, 27, 37, 261, 278, 352, 365, 442
AluI	AGCT	8 cut(s)	17, 27, 37, 261, 278, 352, 365, 442
AlwNI	CAGNNNCTG	1 cut(s)	131
AoxI	GGCC	1 cut(s)	180
ApeKI	GCWGC	5 cut(s)	14, 17, 269, 272, 275
Asp700I	GAANNNNTTC	1 cut(s)	372
BalI	TGGCCA	1 cut(s)	182
BbvCI	CCTCAGC	1 cut(s)	279
BbvI	GCAGC	5 cut(s)	4, 26, 256, 259, 287
BccI	CCATC	1 cut(s)	185
BceAI	ACGGC	1 cut(s)	308
BfmI	CTRYAG	3 cut(s)	18, 273, 532
BglII	AGATCT	2 cut(s)	64, 208
BisI	GCNGC	5 cut(s)	15, 18, 270, 273, 276
BlpI	GCTNAGC	1 cut(s)	443
BlsI	GCNGC	5 cut(s)	16, 19, 271, 274, 277
BmsI	GCATC	3 cut(s)	88, 308, 511
BplI	GAGNNNNNCTC	2 cut(s)	245, 277
Bpu10I	CCTNAGC	1 cut(s)	279
Bpu1102I	GCTNAGC	1 cut(s)	443
BpuEI	CTTGAG	2 cut(s)	345, 509
BsaAI	YACGTR	1 cut(s)	227
BsaBI	GATNNNNATC	1 cut(s)	102
Bsc4I	CCNNNNNNNGG	1 cut(s)	493
Bse1I	ACTGG	1 cut(s)	410
Bse8I	GATNNNNATC	1 cut(s)	102
BseJI	GATNNNNATC	1 cut(s)	102
BseLI	CCNNNNNNNGG	1 cut(s)	493
BseMII	CTCAG	4 cut(s)	149, 255, 270, 434
BseNI	ACTGG	1 cut(s)	410
BseXI	GCAGC	5 cut(s)	4, 26, 256, 259, 287
BshFI	GGCC	1 cut(s)	182
BslFI	GGGAC	1 cut(s)	44
BslI	CCNNNNNNNGG	1 cut(s)	493
BsmFI	GGGAC	1 cut(s)	44
BsmI	GAATGC	1 cut(s)	390
BsnI	GGCC	1 cut(s)	182
Bsp143I	GATC	3 cut(s)	64, 208, 255
Bsp1720I	GCTNAGC	1 cut(s)	443
BspACI	CCGC	1 cut(s)	427
BspANI	GGCC	1 cut(s)	182
BspCNI	CTCAG	4 cut(s)	148, 256, 271, 435
BspMAI	CTGCAG	2 cut(s)	22, 277
BsrI	ACTGG	1 cut(s)	410
BssMI	GATC	3 cut(s)	64, 208, 255
Bst4CI	ACNGT	1 cut(s)	313
BstAPI	GCANNNNNTGC	1 cut(s)	131
BstBAI	YACGTR	1 cut(s)	227
BstC8I	GCNNGC	5 cut(s)	39, 171, 388, 425, 429
BstDEI	CTNAG	4 cut(s)	135, 264, 279, 443
BstENI	CCTNNNNNAGG	1 cut(s)	491
BstKTI	GATC	3 cut(s)	67, 211, 258
BstMBI	GATC	3 cut(s)	64, 208, 255
BstMWI	GCNNNNNNNGC	4 cut(s)	131, 140, 179, 275
BstSFI	CTRYAG	3 cut(s)	18, 273, 532
BstSNI	TACGTA	1 cut(s)	227
BstV1I	GCAGC	5 cut(s)	4, 26, 256, 259, 287
BstX2I	RGATCY	2 cut(s)	64, 208
BstYI	RGATCY	2 cut(s)	64, 208
BsuRI	GGCC	1 cut(s)	182
BtsIMutI	CAGTG	2 cut(s)	143, 516
Cac8I	GCNNGC	5 cut(s)	39, 171, 388, 425, 429
CaiI	CAGNNNCTG	1 cut(s)	131
Csp6I	GTAC	1 cut(s)	331
CviQI	GTAC	1 cut(s)	331
DdeI	CTNAG	4 cut(s)	135, 264, 279, 443
DpnI	GATC	3 cut(s)	66, 210, 257
DpnII	GATC	3 cut(s)	64, 208, 255
EaeI	YGGCCR	1 cut(s)	180
Eco105I	TACGTA	1 cut(s)	227
EcoNI	CCTNNNNNAGG	1 cut(s)	491
FalI	AAGNNNNNCTT	2 cut(s)	354, 386
FaqI	GGGAC	1 cut(s)	44
FauI	CCCGC	1 cut(s)	420
FauNDI	CATATG	1 cut(s)	433
Fnu4HI	GCNGC	5 cut(s)	15, 18, 270, 273, 276
Fsp4HI	GCNGC	5 cut(s)	15, 18, 270, 273, 276
GluI	GCNGC	5 cut(s)	15, 18, 270, 273, 276
HaeIII	GGCC	1 cut(s)	182
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HindIII	AAGCTT	2 cut(s)	25, 35
HinfI	GANTC	4 cut(s)	128, 317, 479, 497
Hpy166II	GTNNAC	1 cut(s)	316
Hpy188I	TCNGA	1 cut(s)	265
Hpy188III	TCNNGA	2 cut(s)	107, 395
Hpy8I	GTNNAC	1 cut(s)	316
HpyCH4III	ACNGT	1 cut(s)	313
HpyCH4IV	ACGT	1 cut(s)	226
HpyCH4V	TGCA	9 cut(s)	14, 20, 101, 115, 169, 275, 299, 386, 524
HpyF10VI	GCNNNNNNNGC	4 cut(s)	131, 140, 179, 275
HpyF3I	CTNAG	4 cut(s)	135, 264, 279, 443
HpySE526I	ACGT	1 cut(s)	226
Kzo9I	GATC	3 cut(s)	64, 208, 255
LmnI	GCTCC	1 cut(s)	201
LpnPI	CCDG	9 cut(s)	69, 75, 141, 155, 196, 380, 409, 423, 479
Lsp1109I	GCAGC	5 cut(s)	4, 26, 256, 259, 287
LweI	GCATC	3 cut(s)	88, 308, 511
MaeII	ACGT	1 cut(s)	226
MaeIII	GTNAC	2 cut(s)	81, 452
MalI	GATC	3 cut(s)	66, 210, 257
MboI	GATC	3 cut(s)	64, 208, 255
MboII	GAAGA	1 cut(s)	59
MflI	RGATCY	2 cut(s)	64, 208
MlsI	TGGCCA	1 cut(s)	182
MluCI	AATT	1 cut(s)	507
MluNI	TGGCCA	1 cut(s)	182
MlyI	GAGTC	1 cut(s)	311
MnlI	CCTC	3 cut(s)	259, 274, 280
Mox20I	TGGCCA	1 cut(s)	182
MroXI	GAANNNNTTC	1 cut(s)	372
MscI	TGGCCA	1 cut(s)	182
MslI	CAYNNNNRTG	2 cut(s)	93, 381
Msp20I	TGGCCA	1 cut(s)	182
MspA1I	CMGCKG	3 cut(s)	17, 278, 442
Mva1269I	GAATGC	1 cut(s)	390
MwoI	GCNNNNNNNGC	4 cut(s)	131, 140, 179, 275
NdeI	CATATG	1 cut(s)	433
NdeII	GATC	3 cut(s)	64, 208, 255
PctI	GAATGC	1 cut(s)	390
PdmI	GAANNNNTTC	1 cut(s)	372
PfeI	GAWTC	3 cut(s)	128, 479, 497
PkrI	GCNGC	5 cut(s)	16, 19, 271, 274, 277
PleI	GAGTC	1 cut(s)	311
PpsI	GAGTC	1 cut(s)	311
Ppu21I	YACGTR	1 cut(s)	227
PsiI	TTATAA	1 cut(s)	417
PstI	CTGCAG	2 cut(s)	22, 277
PstNI	CAGNNNCTG	1 cut(s)	131
PsuI	RGATCY	2 cut(s)	64, 208
PvuII	CAGCTG	3 cut(s)	17, 278, 442
RsaI	GTAC	1 cut(s)	332
RsaNI	GTAC	1 cut(s)	331
RseI	CAYNNNNRTG	2 cut(s)	93, 381
SatI	GCNGC	5 cut(s)	15, 18, 270, 273, 276
Sau3AI	GATC	3 cut(s)	64, 208, 255
SchI	GAGTC	1 cut(s)	311
SfaNI	GCATC	3 cut(s)	88, 308, 511
SfcI	CTRYAG	3 cut(s)	18, 273, 532
SmiMI	CAYNNNNRTG	2 cut(s)	93, 381
SmlI	CTYRAG	2 cut(s)	360, 488
SmoI	CTYRAG	2 cut(s)	360, 488
SnaBI	TACGTA	1 cut(s)	227
Sse9I	AATT	1 cut(s)	507
SsiI	CCGC	1 cut(s)	427
TaaI	ACNGT	1 cut(s)	313
TaiI	ACGT	1 cut(s)	229
TasI	AATT	1 cut(s)	507
TfiI	GAWTC	3 cut(s)	128, 479, 497
TscAI	CASTG	2 cut(s)	143, 523
TseI	GCWGC	5 cut(s)	14, 17, 269, 272, 275
TspDTI	ATGAA	4 cut(s)	59, 77, 365, 492
TspRI	CASTG	2 cut(s)	143, 523
XagI	CCTNNNNNAGG	1 cut(s)	491
XmnI	GAANNNNTTC	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.