Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001516

Physical Location & Seq

Genomic Coordinates Forward (+)

77515445 .. 77520429

Gene Structure 4985 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00055850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGCAGGCTTTGGTGGCCAGAAATGATGGTGTTTGGAGCAAAGATCACATAACTGCTCTACGTAAAATTTGTCCAATGGTCAGTAGTGAGATCAGCTCTGAGGCTGCTGCAGCTGAGGTAGAGGGATATGGCACATCAAAACTTACTGTTGACTCTGCCGTGAAGGACCTACATCTCGCAAATAAGCTCTTTTCTCAAGCTGAACTTTTTCATTTCTGTACAAGCATTCTGGAACTTGTTATTCCAGTTTATAAAAGCAGGCGGGCATATGGACAGCTGAGCAAATGTCACACAATGCTTACTAATATATATGAATCAATCCTTGAGCAGGAATCAAGCCCAATTCCATTCACTGATGCAACATACTATAGGGTAGGGTTTTATGGTGATAGATTTGGAAAATTAAACAGAAAGGAATATGTATACAGGGAGCCACGTGATGTAAGACCAGGTGACATAATGGAGAAACTTAGCCATAGCTACGAGTCTGGTATGGATGGAAATCACACCTTACACATCATTCCGGATTATAGGCAGGTAAAGGCAGATGAGTTGCAGTCTGGAGTATGCTATTTTCAGATAACTGCTGTTGATCCAGTCATGGAAGATGAAGATTTGGGAAGCAGAAGGAAGAGAATCTTTTTTCTCTTTCGACAGGAAGTGTTCGTGCGCGAGTCTTTGACCGCTTTTTGTTTGATACACCTTTACGAAAAATGGAAAAACTCAAGGTGGATTGGAAGACCAGTGGAAGAGGCGGACTGTTCTTCAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0006810 GO:0008064 GO:0008150 GO:0008360 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009958 GO:0009966 GO:0009987 GO:0010646 GO:0010928 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0017016 GO:0017048 GO:0019898 GO:0019899 GO:0022603 GO:0022604 GO:0023051 GO:0030832 GO:0031267 GO:0032535 GO:0032956 GO:0032970 GO:0033043 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051020 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0065007 GO:0065008 GO:0065009 GO:0070971 GO:0071840 GO:0071944 GO:0090066 GO:0098772 GO:0110053 GO:1902903

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DHR-2 DOCK-C2

Protein Analysis

257

Amino Acids

29.56

Weight (kDa)

5.94

Isoelectric Point (pI)

47.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHR-2_Lobe_A	PF06920	6 - 109	1.3e-18	DHR-2, Lobe A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16340 AT4G16340
fragaria_vesca	FvH4_3g14770 FvH4_3g14770 FvH4_3g14770
malus_domestica	MD05G1229900.v1.1 MD05G1233200.v1.1 MD10G1209700.v1.1
prunus_persica	Prupe.3G108400_v2.0.a1 Prupe.4G132800_v2.0.a1
pyrus_communis	pycom05g21080 pycom05g21090 pycom10g17800 pycom10g17820
rosa_chinensis	RchiOBHm_Chr1g0327621 RchiOBHm_Chr3g0473981 RchiOBHm_Chr5g0024291 RchiOBHm_Chr5g0024301 RchiOBHm_Chr5g0024371 RchiOBHm_Chr5g0024381
rosa_laevigata	RLG00000029979 RLG00000032795 RLG00000036969
rosa_multiflora	Rmu_co8048528.1_g000001 Rmu_co8378897.1_g000002 Rmu_sc0005861.1_g000003 Rmu_sc0015218.1_g000005 Rmu_ssc0000042.1_g000009
rosa_roxburghii	Rroxscaffold_1G00054850 Rroxscaffold_1G00054890 Rroxscaffold_1G00055790 Rroxscaffold_1G00055850 Rroxscaffold_4G00322510
rosa_rugosa	Rorug01G0068800 Rorug05G0083000 Rorug05G0083100
rosa_samantha	Rh3AG187600 Rh3BG216300 Rh3CG212800 Rh5AG173700 Rh5BG170500 Rh5BG170900 Rh5BG171900 Rh5BG172000 Rh5CG186800 Rh5CG187500 Rh5CG187600 Rh5DG173100
rosa_wichuraiana	Rw0G000890 Rw3G017190 Rw5G015680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	252
Acc36I	ACCTGC	1 cut(s)	526
AccI	GTMKAC	1 cut(s)	423
AccII	CGCG	1 cut(s)	672
AccIII	TCCGGA	1 cut(s)	523
AciI	CCGC	3 cut(s)	262, 684, 755
AclWI	GGATC	1 cut(s)	587
AcoI	YGGCCR	1 cut(s)	15
AcsI	RAATTY	1 cut(s)	66
AcuI	CTGAAG	1 cut(s)	750
AcvI	CACGTG	1 cut(s)	437
AfaI	GTAC	1 cut(s)	220
AfiI	CCNNNNNNNGG	1 cut(s)	328
AjnI	CCWGG	1 cut(s)	448
AluBI	AGCT	6 cut(s)	96, 113, 187, 200, 277, 480
AluI	AGCT	6 cut(s)	96, 113, 187, 200, 277, 480
AlwI	GGATC	1 cut(s)	587
Aor13HI	TCCGGA	1 cut(s)	523
AoxI	GGCC	1 cut(s)	15
ApeKI	GCWGC	3 cut(s)	104, 107, 110
ApoI	RAATTY	1 cut(s)	66
Asp700I	GAANNNNTTC	1 cut(s)	207
AspLEI	GCGC	1 cut(s)	672
AspS9I	GGNCC	1 cut(s)	166
AsuHPI	GGTGA	2 cut(s)	398, 464
AvaII	GGWCC	1 cut(s)	166
BalI	TGGCCA	1 cut(s)	17
BbrPI	CACGTG	1 cut(s)	437
BbsI	GAAGAC	1 cut(s)	745
BbvCI	CCTCAGC	1 cut(s)	114
BbvI	GCAGC	3 cut(s)	91, 94, 122
BccI	CCATC	2 cut(s)	20, 491
BceAI	ACGGC	1 cut(s)	143
BciT130I	CCWGG	1 cut(s)	450
BfmI	CTRYAG	2 cut(s)	108, 367
BfuAI	ACCTGC	1 cut(s)	526
BisI	GCNGC	3 cut(s)	105, 108, 111
BlpI	GCTNAGC	1 cut(s)	278
BlsI	GCNGC	3 cut(s)	106, 109, 112
Bme1390I	CCNGG	1 cut(s)	450
Bme18I	GGWCC	1 cut(s)	166
BmgT120I	GGNCC	1 cut(s)	166
BmiI	GGNNCC	1 cut(s)	432
BmrFI	CCNGG	1 cut(s)	450
BmsI	GCATC	1 cut(s)	346
BpiI	GAAGAC	1 cut(s)	745
BplI	GAGNNNNNCTC	2 cut(s)	80, 112
BpmI	CTGGAG	1 cut(s)	582
Bpu10I	CCTNAGC	1 cut(s)	114
Bpu1102I	GCTNAGC	1 cut(s)	278
BpuEI	CTTGAG	3 cut(s)	180, 344, 709
BsaAI	YACGTR	2 cut(s)	62, 437
BsaBI	GATNNNNATC	1 cut(s)	501
BsaWI	WCCGGW	1 cut(s)	523
Bsc4I	CCNNNNNNNGG	1 cut(s)	328
Bse1I	ACTGG	3 cut(s)	245, 596, 743
Bse8I	GATNNNNATC	1 cut(s)	501
BseAI	TCCGGA	1 cut(s)	523
BseBI	CCWGG	1 cut(s)	450
BseGI	GGATG	1 cut(s)	502
BseJI	GATNNNNATC	1 cut(s)	501
BseLI	CCNNNNNNNGG	1 cut(s)	328
BseMII	CTCAG	3 cut(s)	90, 105, 269
BseNI	ACTGG	3 cut(s)	245, 596, 743
BseXI	GCAGC	3 cut(s)	91, 94, 122
Bsh1236I	CGCG	1 cut(s)	672
BshFI	GGCC	1 cut(s)	17
BsiSI	CCGG	1 cut(s)	524
BslI	CCNNNNNNNGG	1 cut(s)	328
BsmI	GAATGC	1 cut(s)	225
BsnI	GGCC	1 cut(s)	17
Bsp13I	TCCGGA	1 cut(s)	523
Bsp1407I	TGTACA	1 cut(s)	218
Bsp143I	GATC	3 cut(s)	43, 90, 592
Bsp1720I	GCTNAGC	1 cut(s)	278
BspACI	CCGC	3 cut(s)	262, 684, 755
BspANI	GGCC	1 cut(s)	17
BspCNI	CTCAG	3 cut(s)	91, 106, 270
BspEI	TCCGGA	1 cut(s)	523
BspFNI	CGCG	1 cut(s)	672
BspLI	GGNNCC	1 cut(s)	432
BspMAI	CTGCAG	1 cut(s)	112
BspMI	ACCTGC	1 cut(s)	526
BspPI	GGATC	1 cut(s)	587
BsrGI	TGTACA	1 cut(s)	218
BsrI	ACTGG	3 cut(s)	245, 596, 743
BssMI	GATC	3 cut(s)	43, 90, 592
BssNAI	GTATAC	1 cut(s)	424
Bst1107I	GTATAC	1 cut(s)	424
Bst2UI	CCWGG	1 cut(s)	450
Bst4CI	ACNGT	2 cut(s)	148, 761
Bst6I	CTCTTC	2 cut(s)	626, 744
BstAUI	TGTACA	1 cut(s)	218
BstBAI	YACGTR	2 cut(s)	62, 437
BstC8I	GCNNGC	3 cut(s)	6, 260, 264
BstDEI	CTNAG	4 cut(s)	99, 114, 278, 470
BstENI	CCTNNNNNAGG	1 cut(s)	326
BstF5I	GGATG	1 cut(s)	502
BstFNI	CGCG	1 cut(s)	672
BstHHI	GCGC	1 cut(s)	672
BstKTI	GATC	3 cut(s)	46, 93, 595
BstMBI	GATC	3 cut(s)	43, 90, 592
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 110
BstNI	CCWGG	1 cut(s)	450
BstSCI	CCNGG	1 cut(s)	448
BstSFI	CTRYAG	2 cut(s)	108, 367
BstSNI	TACGTA	1 cut(s)	62
BstUI	CGCG	1 cut(s)	672
BstV1I	GCAGC	3 cut(s)	91, 94, 122
BstV2I	GAAGAC	1 cut(s)	745
BstZ17I	GTATAC	1 cut(s)	424
BsuRI	GGCC	1 cut(s)	17
BtsCI	GGATG	1 cut(s)	502
BtsIMutI	CAGTG	2 cut(s)	351, 750
BveI	ACCTGC	1 cut(s)	526
Cac8I	GCNNGC	3 cut(s)	6, 260, 264
CfoI	GCGC	1 cut(s)	672
Cfr13I	GGNCC	1 cut(s)	166
CsiI	ACCWGGT	1 cut(s)	448
Csp6I	GTAC	1 cut(s)	219
CviAII	CATG	1 cut(s)	601
CviQI	GTAC	1 cut(s)	219
DdeI	CTNAG	4 cut(s)	99, 114, 278, 470
DpnI	GATC	3 cut(s)	45, 92, 594
DpnII	GATC	3 cut(s)	43, 90, 592
EaeI	YGGCCR	1 cut(s)	15
Eam1104I	CTCTTC	2 cut(s)	626, 744
EarI	CTCTTC	2 cut(s)	626, 744
EciI	GGCGGA	1 cut(s)	770
Eco105I	TACGTA	1 cut(s)	62
Eco47I	GGWCC	1 cut(s)	166
Eco57I	CTGAAG	1 cut(s)	750
Eco72I	CACGTG	1 cut(s)	437
EcoNI	CCTNNNNNAGG	1 cut(s)	326
EcoO109I	RGGNCCY	1 cut(s)	166
EcoRII	CCWGG	1 cut(s)	448
FaeI	CATG	1 cut(s)	604
FalI	AAGNNNNNCTT	4 cut(s)	189, 221, 623, 655
FatI	CATG	1 cut(s)	600
FauI	CCCGC	1 cut(s)	255
FauNDI	CATATG	1 cut(s)	268
FblI	GTMKAC	1 cut(s)	423
Fnu4HI	GCNGC	3 cut(s)	105, 108, 111
FokI	GGATG	1 cut(s)	509
Fsp4HI	GCNGC	3 cut(s)	105, 108, 111
GlaI	GCGC	1 cut(s)	671
GluI	GCNGC	3 cut(s)	105, 108, 111
GsuI	CTGGAG	1 cut(s)	582
HaeIII	GGCC	1 cut(s)	17
HapII	CCGG	1 cut(s)	524
HhaI	GCGC	1 cut(s)	672
Hin1II	CATG	1 cut(s)	604
Hin6I	GCGC	1 cut(s)	670
HinP1I	GCGC	1 cut(s)	670
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HinfI	GANTC	6 cut(s)	152, 314, 332, 485, 636, 674
HpaII	CCGG	1 cut(s)	524
HphI	GGTGA	2 cut(s)	398, 464
Hpy166II	GTNNAC	2 cut(s)	151, 424
Hpy188I	TCNGA	3 cut(s)	100, 579, 769
Hpy188III	TCNNGA	3 cut(s)	230, 524, 561
Hpy8I	GTNNAC	2 cut(s)	151, 424
HpyAV	CCTTC	2 cut(s)	157, 621
HpyCH4III	ACNGT	2 cut(s)	148, 761
HpyCH4IV	ACGT	2 cut(s)	61, 436
HpyCH4V	TGCA	4 cut(s)	4, 110, 359, 556
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 110
HpyF3I	CTNAG	4 cut(s)	99, 114, 278, 470
HpySE526I	ACGT	2 cut(s)	61, 436
Hsp92II	CATG	1 cut(s)	604
HspAI	GCGC	1 cut(s)	670
Kpn2I	TCCGGA	1 cut(s)	523
Kzo9I	GATC	3 cut(s)	43, 90, 592
LmnI	GCTCC	2 cut(s)	36, 430
Lsp1109I	GCAGC	3 cut(s)	91, 94, 122
LweI	GCATC	1 cut(s)	346
MabI	ACCWGGT	1 cut(s)	448
MaeII	ACGT	2 cut(s)	61, 436
MaeIII	GTNAC	2 cut(s)	287, 452
MalI	GATC	3 cut(s)	45, 92, 594
MboI	GATC	3 cut(s)	43, 90, 592
MboII	GAAGA	6 cut(s)	617, 623, 643, 750, 756, 761
MlsI	TGGCCA	1 cut(s)	17
MluCI	AATT	3 cut(s)	66, 342, 401
MluNI	TGGCCA	1 cut(s)	17
MlyI	GAGTC	3 cut(s)	146, 494, 683
MnlI	CCTC	4 cut(s)	94, 109, 115, 745
Mox20I	TGGCCA	1 cut(s)	17
MroI	TCCGGA	1 cut(s)	523
MroXI	GAANNNNTTC	1 cut(s)	207
MscI	TGGCCA	1 cut(s)	17
MseI	TTAA	1 cut(s)	404
Msp20I	TGGCCA	1 cut(s)	17
MspA1I	CMGCKG	2 cut(s)	113, 277
MspI	CCGG	1 cut(s)	524
MspR9I	CCNGG	1 cut(s)	450
Mva1269I	GAATGC	1 cut(s)	225
MvaI	CCWGG	1 cut(s)	450
MvnI	CGCG	1 cut(s)	672
MwoI	GCNNNNNNNGC	2 cut(s)	14, 110
NdeI	CATATG	1 cut(s)	268
NdeII	GATC	3 cut(s)	43, 90, 592
NlaIII	CATG	1 cut(s)	604
NlaIV	GGNNCC	1 cut(s)	432
NmuCI	GTSAC	2 cut(s)	287, 452
PctI	GAATGC	1 cut(s)	225
PdmI	GAANNNNTTC	1 cut(s)	207
PfeI	GAWTC	3 cut(s)	314, 332, 636
PkrI	GCNGC	3 cut(s)	106, 109, 112
PleI	GAGTC	3 cut(s)	146, 493, 682
PmaCI	CACGTG	1 cut(s)	437
PmlI	CACGTG	1 cut(s)	437
PpsI	GAGTC	3 cut(s)	146, 493, 682
Ppu21I	YACGTR	2 cut(s)	62, 437
PpuMI	RGGWCCY	1 cut(s)	166
PsiI	TTATAA	1 cut(s)	252
Psp5II	RGGWCCY	1 cut(s)	166
Psp6I	CCWGG	1 cut(s)	448
PspCI	CACGTG	1 cut(s)	437
PspGI	CCWGG	1 cut(s)	448
PspN4I	GGNNCC	1 cut(s)	432
PspPI	GGNCC	1 cut(s)	166
PspPPI	RGGWCCY	1 cut(s)	166
PstI	CTGCAG	1 cut(s)	112
PvuII	CAGCTG	2 cut(s)	113, 277
RsaI	GTAC	1 cut(s)	220
RsaNI	GTAC	1 cut(s)	219
SaqAI	TTAA	1 cut(s)	404
SatI	GCNGC	3 cut(s)	105, 108, 111
Sau3AI	GATC	3 cut(s)	43, 90, 592
Sau96I	GGNCC	1 cut(s)	166
SchI	GAGTC	3 cut(s)	146, 494, 683
ScrFI	CCNGG	1 cut(s)	450
SexAI	ACCWGGT	1 cut(s)	448
SfaNI	GCATC	1 cut(s)	346
SfcI	CTRYAG	2 cut(s)	108, 367
SinI	GGWCC	1 cut(s)	166
SmlI	CTYRAG	3 cut(s)	195, 323, 724
SmoI	CTYRAG	3 cut(s)	195, 323, 724
SnaBI	TACGTA	1 cut(s)	62
Sse9I	AATT	3 cut(s)	66, 342, 401
SsiI	CCGC	3 cut(s)	262, 684, 755
StyD4I	CCNGG	1 cut(s)	448
TaaI	ACNGT	2 cut(s)	148, 761
TaiI	ACGT	2 cut(s)	64, 439
TaqI	TCGA	1 cut(s)	652
TasI	AATT	3 cut(s)	66, 342, 401
TatI	WGTACW	1 cut(s)	218
TfiI	GAWTC	3 cut(s)	314, 332, 636
Tru1I	TTAA	1 cut(s)	404
Tru9I	TTAA	1 cut(s)	404
TscAI	CASTG	2 cut(s)	358, 750
TseFI	GTSAC	2 cut(s)	287, 452
TseI	GCWGC	3 cut(s)	104, 107, 110
Tsp45I	GTSAC	2 cut(s)	287, 452
TspDTI	ATGAA	3 cut(s)	200, 327, 624
TspRI	CASTG	2 cut(s)	358, 750
VpaK11BI	GGWCC	1 cut(s)	166
XagI	CCTNNNNNAGG	1 cut(s)	326
XapI	RAATTY	1 cut(s)	66
XmiI	GTMKAC	1 cut(s)	423
XmnI	GAANNNNTTC	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.