Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0001516

Physical Location & Seq

Genomic Coordinates Forward (+)

19505973 .. 19509202

Gene Structure 3230 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG212800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGCGATTCGGACCTCCATGGCCGTCAGAGGCGTTGATTTCAAGTGAATTGCACACTGCCGGTGCAAGGCAAACAAAGGCAGACGATACCACTGATGATGATTTACCAAGTACCTTGGAGCGCCAATTTATAGATGCAGTAGCCTCTGATTCAGCACACTCCAATGATCCAAAGCATTTTGGTCAATCTCCTCTAGCTGCTTATCAACCAGCTTTTGATTGGGAAAGTGAAAGATCATTGATATGCGGTCAAATGGTTCCAGAAACTCCAATATCTCAGTATGGCAATTGTATAATCTTTTCTTCATGTAGGAGTTCTTATAAGCCTGATTGCTTTTCCCTTGTGCTTATTAATTGTTATTTTCTCTACTTCTCTCAGCGGCCTGAAGATCTCAGTGAAAGTTCTGTCCCTATCATTTCAAGCGGGACTAGTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0006810 GO:0008064 GO:0008150 GO:0008360 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009958 GO:0009966 GO:0009987 GO:0010646 GO:0010928 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0017016 GO:0017048 GO:0019898 GO:0019899 GO:0022603 GO:0022604 GO:0023051 GO:0030832 GO:0031267 GO:0032535 GO:0032956 GO:0032970 GO:0033043 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051020 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0065007 GO:0065008 GO:0065009 GO:0070971 GO:0071840 GO:0071944 GO:0090066 GO:0098772 GO:0110053 GO:1902903

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DHR-2 DOCK-C2

Protein Analysis

145

Amino Acids

16.09

Weight (kDa)

4.47

Isoelectric Point (pI)

53.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16340 AT4G16340
fragaria_vesca	FvH4_3g14770 FvH4_3g14770 FvH4_3g14770
malus_domestica	MD05G1229900.v1.1 MD05G1233200.v1.1 MD10G1209700.v1.1
prunus_persica	Prupe.3G108400_v2.0.a1 Prupe.4G132800_v2.0.a1
pyrus_communis	pycom05g21080 pycom05g21090 pycom10g17800 pycom10g17820
rosa_chinensis	RchiOBHm_Chr1g0327621 RchiOBHm_Chr3g0473981 RchiOBHm_Chr5g0024291 RchiOBHm_Chr5g0024301 RchiOBHm_Chr5g0024371 RchiOBHm_Chr5g0024381
rosa_laevigata	RLG00000029979 RLG00000032795 RLG00000036969
rosa_multiflora	Rmu_co8048528.1_g000001 Rmu_co8378897.1_g000002 Rmu_sc0005861.1_g000003 Rmu_sc0015218.1_g000005 Rmu_ssc0000042.1_g000009
rosa_roxburghii	Rroxscaffold_1G00054850 Rroxscaffold_1G00054890 Rroxscaffold_1G00055790 Rroxscaffold_1G00055850 Rroxscaffold_4G00322510
rosa_rugosa	Rorug01G0068800 Rorug05G0083000 Rorug05G0083100
rosa_samantha	Rh3AG187600 Rh3BG216300 Rh3CG212800 Rh5AG173700 Rh5BG170500 Rh5BG170900 Rh5BG171900 Rh5BG172000 Rh5CG186800 Rh5CG187500 Rh5CG187600 Rh5DG173100
rosa_wichuraiana	Rw0G000890 Rw3G017190 Rw5G015680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	321
AciI	CCGC	3 cut(s)	246, 379, 423
AclWI	GGATC	1 cut(s)	161
AcoI	YGGCCR	1 cut(s)	20
AcuI	CTGAAG	1 cut(s)	405
AfaI	GTAC	1 cut(s)	112
AfiI	CCNNNNNNNGG	1 cut(s)	66
AgsI	TTSAA	2 cut(s)	42, 420
AhlI	ACTAGT	1 cut(s)	428
AluBI	AGCT	2 cut(s)	197, 212
AluI	AGCT	2 cut(s)	197, 212
AlwI	GGATC	1 cut(s)	161
AoxI	GGCC	2 cut(s)	20, 380
ApeKI	GCWGC	1 cut(s)	197
AseI	ATTAAT	1 cut(s)	351
AspLEI	GCGC	1 cut(s)	123
AspS9I	GGNCC	1 cut(s)	11
AvaII	GGWCC	1 cut(s)	11
BbvI	GCAGC	1 cut(s)	184
BceAI	ACGGC	1 cut(s)	7
BcuI	ACTAGT	1 cut(s)	428
BfaI	CTAG	2 cut(s)	194, 429
BfoI	RGCGCY	1 cut(s)	124
BglII	AGATCT	1 cut(s)	388
BisI	GCNGC	2 cut(s)	198, 380
BlsI	GCNGC	2 cut(s)	199, 381
Bme18I	GGWCC	1 cut(s)	11
BmgT120I	GGNCC	1 cut(s)	11
BmiI	GGNNCC	1 cut(s)	258
BmsI	GCATC	1 cut(s)	124
BsaJI	CCNNGG	2 cut(s)	17, 114
Bsc4I	CCNNNNNNNGG	1 cut(s)	66
Bse118I	RCCGGY	1 cut(s)	59
BseDI	CCNNGG	2 cut(s)	17, 114
BseLI	CCNNNNNNNGG	1 cut(s)	66
BseMII	CTCAG	3 cut(s)	290, 389, 406
BseRI	GAGGAG	1 cut(s)	180
BseXI	GCAGC	1 cut(s)	184
BshFI	GGCC	2 cut(s)	22, 382
BsiSI	CCGG	1 cut(s)	60
BslFI	GGGAC	1 cut(s)	392
BslI	CCNNNNNNNGG	1 cut(s)	66
BsmFI	GGGAC	1 cut(s)	392
BsnI	GGCC	2 cut(s)	22, 382
Bsp143I	GATC	3 cut(s)	166, 233, 388
Bsp19I	CCATGG	1 cut(s)	17
BspACI	CCGC	3 cut(s)	246, 379, 423
BspANI	GGCC	2 cut(s)	22, 382
BspCNI	CTCAG	3 cut(s)	289, 388, 405
BspLI	GGNNCC	1 cut(s)	258
BspPI	GGATC	1 cut(s)	161
BsrFI	RCCGGY	1 cut(s)	59
BssAI	RCCGGY	1 cut(s)	59
BssECI	CCNNGG	2 cut(s)	17, 114
BssMI	GATC	3 cut(s)	166, 233, 388
BssT1I	CCWWGG	2 cut(s)	17, 114
BstDEI	CTNAG	3 cut(s)	276, 375, 392
BstDSI	CCRYGG	1 cut(s)	17
BstH2I	RGCGCY	1 cut(s)	124
BstHHI	GCGC	1 cut(s)	123
BstKTI	GATC	3 cut(s)	169, 236, 391
BstMBI	GATC	3 cut(s)	166, 233, 388
BstV1I	GCAGC	1 cut(s)	184
BstX2I	RGATCY	1 cut(s)	388
BstYI	RGATCY	1 cut(s)	388
BsuRI	GGCC	2 cut(s)	22, 382
BtgI	CCRYGG	1 cut(s)	17
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	3 cut(s)	54, 90, 400
CfoI	GCGC	1 cut(s)	123
Cfr10I	RCCGGY	1 cut(s)	59
Cfr13I	GGNCC	1 cut(s)	11
Csp6I	GTAC	1 cut(s)	111
CviAII	CATG	2 cut(s)	18, 306
CviJI	RGCY	6 cut(s)	22, 143, 197, 212, 325, 382
CviKI_1	RGCY	6 cut(s)	22, 143, 197, 212, 325, 382
CviQI	GTAC	1 cut(s)	111
DdeI	CTNAG	3 cut(s)	276, 375, 392
DpnI	GATC	3 cut(s)	168, 235, 390
DpnII	GATC	3 cut(s)	166, 233, 388
EaeI	YGGCCR	1 cut(s)	20
Eco130I	CCWWGG	2 cut(s)	17, 114
Eco47I	GGWCC	1 cut(s)	11
Eco57I	CTGAAG	1 cut(s)	405
EcoT14I	CCWWGG	2 cut(s)	17, 114
ErhI	CCWWGG	2 cut(s)	17, 114
FaeI	CATG	2 cut(s)	21, 309
FaiI	YATR	7 cut(s)	19, 131, 244, 282, 293, 307, 321
FaqI	GGGAC	1 cut(s)	392
FatI	CATG	2 cut(s)	17, 305
FauI	CCCGC	1 cut(s)	416
Fnu4HI	GCNGC	2 cut(s)	198, 380
Fsp4HI	GCNGC	2 cut(s)	198, 380
FspBI	CTAG	2 cut(s)	194, 429
GlaI	GCGC	1 cut(s)	122
GluI	GCNGC	2 cut(s)	198, 380
HaeII	RGCGCY	1 cut(s)	124
HaeIII	GGCC	2 cut(s)	22, 382
HapII	CCGG	1 cut(s)	60
HhaI	GCGC	1 cut(s)	123
Hin1II	CATG	2 cut(s)	21, 309
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HinfI	GANTC	2 cut(s)	6, 149
HpaII	CCGG	1 cut(s)	60
Hpy188I	TCNGA	3 cut(s)	11, 28, 148
Hpy188III	TCNNGA	1 cut(s)	260
HpyCH4V	TGCA	3 cut(s)	52, 65, 137
HpyF3I	CTNAG	3 cut(s)	276, 375, 392
Hsp92II	CATG	2 cut(s)	21, 309
HspAI	GCGC	1 cut(s)	121
Kzo9I	GATC	3 cut(s)	166, 233, 388
LmnI	GCTCC	1 cut(s)	118
LpnPI	CCDG	5 cut(s)	73, 222, 273, 339, 396
Lsp1109I	GCAGC	1 cut(s)	184
LweI	GCATC	1 cut(s)	124
MaeI	CTAG	2 cut(s)	194, 429
MalI	GATC	3 cut(s)	168, 235, 390
MboI	GATC	3 cut(s)	166, 233, 388
MboII	GAAGA	2 cut(s)	294, 398
MfeI	CAATTG	1 cut(s)	286
MflI	RGATCY	1 cut(s)	388
MluCI	AATT	4 cut(s)	47, 125, 286, 352
MnlI	CCTC	4 cut(s)	22, 24, 154, 201
MseI	TTAA	1 cut(s)	351
MslI	CAYNNNNRTG	2 cut(s)	162, 241
MspA1I	CMGCKG	1 cut(s)	379
MspI	CCGG	1 cut(s)	60
MunI	CAATTG	1 cut(s)	286
NcoI	CCATGG	1 cut(s)	17
NdeII	GATC	3 cut(s)	166, 233, 388
NlaIII	CATG	2 cut(s)	21, 309
NlaIV	GGNNCC	1 cut(s)	258
PfeI	GAWTC	2 cut(s)	6, 149
PkrI	GCNGC	2 cut(s)	199, 381
PshBI	ATTAAT	1 cut(s)	351
PsiI	TTATAA	1 cut(s)	321
PspN4I	GGNNCC	1 cut(s)	258
PspPI	GGNCC	1 cut(s)	11
PsuI	RGATCY	1 cut(s)	388
RsaI	GTAC	1 cut(s)	112
RsaNI	GTAC	1 cut(s)	111
RseI	CAYNNNNRTG	2 cut(s)	162, 241
SaqAI	TTAA	1 cut(s)	351
SatI	GCNGC	2 cut(s)	198, 380
Sau3AI	GATC	3 cut(s)	166, 233, 388
Sau96I	GGNCC	1 cut(s)	11
SetI	ASST	4 cut(s)	16, 116, 199, 214
SfaNI	GCATC	1 cut(s)	124
SinI	GGWCC	1 cut(s)	11
SmiMI	CAYNNNNRTG	2 cut(s)	162, 241
SpeI	ACTAGT	1 cut(s)	428
Sse9I	AATT	4 cut(s)	47, 125, 286, 352
SsiI	CCGC	3 cut(s)	246, 379, 423
SspMI	CTAG	2 cut(s)	194, 429
StyI	CCWWGG	2 cut(s)	17, 114
TasI	AATT	4 cut(s)	47, 125, 286, 352
TauI	GCSGC	1 cut(s)	382
TfiI	GAWTC	2 cut(s)	6, 149
Tru1I	TTAA	1 cut(s)	351
Tru9I	TTAA	1 cut(s)	351
TscAI	CASTG	3 cut(s)	61, 97, 400
TseI	GCWGC	1 cut(s)	197
TspDTI	ATGAA	1 cut(s)	294
TspRI	CASTG	3 cut(s)	61, 97, 400
VpaK11BI	GGWCC	1 cut(s)	11
VspI	ATTAAT	1 cut(s)	351
XcmI	CCANNNNNNNNNTGG	1 cut(s)	216
XspI	CTAG	2 cut(s)	194, 429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.