Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001516

Physical Location & Seq

Genomic Coordinates Forward (+)

52802836 .. 52808040

Gene Structure 5205 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00322510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGCCGTCAGAAGCATCGATTTCAAGTGTGCAAGGCGAACCAATGCAGACGATAGCACTGATGATGATTTACCAAGTACCTCGGAGCGCCAATTTACAGATGCAGTAGCCTCTGATTCAGCACACTCCAATGATCCAAAGCATTTTGGTCAATCTCCTCTCCCTGCTTATCAACCAGCTTTTGATTGGGAAAGTGAAAGATCATTGATATGCGGTCAAAGGGTTCCAGAAACTCCAATATCTCAGTATGGCAATTGTATAATCTTTTCTTCATGTAGGAGTTCTTATAAGCCTGATTGCTTTTCCCTTGTGCTTATTAATTGTTATTTTCTCTACTTCTCTCAGTGGCCTGAAGATCTCAGTGAAAGTTCTGTCCCTATCATTTCAAGCGGGACTGGTTGGGAGAGAAGAGAAAAGTTGTCAGAGGATTTCTATTTTCGTCACGCACCAACAGAAACACAGAATGTAAGAACTTTATATATTTTTGCCACCACTTTAATGGTCATCCTTTGTTCTTTAAGTAAATTTTTAGCACACATCATGACTGACAAATTTACTACTGCTCCCGTGTCAACTTTTTGGGTGAAGATTTCTTTTGAACCCCGTGGAATCTTCTATTTAGATGCTCCACCATCATCAGTTTGTCTTCTGATCCAGTTAGAGAAGCACGCCACAGAAGAAGGCGGGGTTACGCCGACACCTACAGTTTATTCTCGTAAAGAACCGCAAGGCTTAGAACTTCGGCTTCGGGAAGCACAACCTCATTTACTTGACCGGCCAGGTTCACAAGGGCCTACGACGTCGTCTTACCCCACCTTCACCCCCAAAGCCCTCGCCAGTCGCCACCTACACCGCGCTGCAGCAGATTTCATCGTCGATCAACTGAAAAACTGGGTCAGTCTATCGTCTCGGACCAAAGACAGTGTTTGTTGGGCCGTACTTGATTTCCAAGGCCTAAAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0006810 GO:0008064 GO:0008150 GO:0008360 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009958 GO:0009966 GO:0009987 GO:0010646 GO:0010928 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0017016 GO:0017048 GO:0019898 GO:0019899 GO:0022603 GO:0022604 GO:0023051 GO:0030832 GO:0031267 GO:0032535 GO:0032956 GO:0032970 GO:0033043 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051020 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0065007 GO:0065008 GO:0065009 GO:0070971 GO:0071840 GO:0071944 GO:0090066 GO:0098772 GO:0110053 GO:1902903

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DHR-2 DOCK-C2

Protein Analysis

321

Amino Acids

36.18

Weight (kDa)

5.92

Isoelectric Point (pI)

50.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16340 AT4G16340
fragaria_vesca	FvH4_3g14770 FvH4_3g14770 FvH4_3g14770
malus_domestica	MD05G1229900.v1.1 MD05G1233200.v1.1 MD10G1209700.v1.1
prunus_persica	Prupe.3G108400_v2.0.a1 Prupe.4G132800_v2.0.a1
pyrus_communis	pycom05g21080 pycom05g21090 pycom10g17800 pycom10g17820
rosa_chinensis	RchiOBHm_Chr1g0327621 RchiOBHm_Chr3g0473981 RchiOBHm_Chr5g0024291 RchiOBHm_Chr5g0024301 RchiOBHm_Chr5g0024371 RchiOBHm_Chr5g0024381
rosa_laevigata	RLG00000029979 RLG00000032795 RLG00000036969
rosa_multiflora	Rmu_co8048528.1_g000001 Rmu_co8378897.1_g000002 Rmu_sc0005861.1_g000003 Rmu_sc0015218.1_g000005 Rmu_ssc0000042.1_g000009
rosa_roxburghii	Rroxscaffold_1G00054850 Rroxscaffold_1G00054890 Rroxscaffold_1G00055790 Rroxscaffold_1G00055850 Rroxscaffold_4G00322510
rosa_rugosa	Rorug01G0068800 Rorug05G0083000 Rorug05G0083100
rosa_samantha	Rh3AG187600 Rh3BG216300 Rh3CG212800 Rh5AG173700 Rh5BG170500 Rh5BG170900 Rh5BG171900 Rh5BG172000 Rh5CG186800 Rh5CG187500 Rh5CG187600 Rh5DG173100
rosa_wichuraiana	Rw0G000890 Rw3G017190 Rw5G015680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	288
AatII	GACGTC	1 cut(s)	803
AccII	CGCG	1 cut(s)	855
AciI	CCGC	5 cut(s)	213, 390, 684, 725, 853
AclWI	GGATC	2 cut(s)	128, 646
AcoI	YGGCCR	2 cut(s)	3, 776
AcsI	RAATTY	2 cut(s)	524, 551
AcuI	CTGAAG	1 cut(s)	372
AcyI	GRCGYC	1 cut(s)	800
AfaI	GTAC	2 cut(s)	79, 939
AgsI	TTSAA	3 cut(s)	25, 387, 599
AjnI	CCWGG	1 cut(s)	778
AluBI	AGCT	1 cut(s)	179
AluI	AGCT	1 cut(s)	179
Alw26I	GTCTC	1 cut(s)	912
AlwI	GGATC	2 cut(s)	128, 646
AoxI	GGCC	6 cut(s)	3, 347, 776, 791, 933, 952
ApeKI	GCWGC	2 cut(s)	857, 860
ApoI	RAATTY	2 cut(s)	524, 551
AseI	ATTAAT	1 cut(s)	318
AspLEI	GCGC	2 cut(s)	90, 857
AspS9I	GGNCC	3 cut(s)	791, 912, 933
AsuHPI	GGTGA	2 cut(s)	595, 811
AvaII	GGWCC	1 cut(s)	912
BbsI	GAAGAC	1 cut(s)	638
BbvI	GCAGC	2 cut(s)	844, 872
BccI	CCATC	1 cut(s)	640
BceAI	ACGGC	1 cut(s)	920
BciT130I	CCWGG	1 cut(s)	780
BcoDI	GTCTC	1 cut(s)	912
BfmI	CTRYAG	2 cut(s)	702, 858
BfoI	RGCGCY	1 cut(s)	91
BglII	AGATCT	1 cut(s)	355
BisI	GCNGC	2 cut(s)	858, 861
BlsI	GCNGC	2 cut(s)	859, 862
Bme1390I	CCNGG	1 cut(s)	780
Bme18I	GGWCC	1 cut(s)	912
BmgT120I	GGNCC	3 cut(s)	791, 912, 933
BmiI	GGNNCC	1 cut(s)	225
BmrFI	CCNGG	1 cut(s)	780
BmrI	ACTGGG	1 cut(s)	901
BmsI	GCATC	3 cut(s)	24, 91, 613
BmuI	ACTGGG	1 cut(s)	901
BpiI	GAAGAC	1 cut(s)	638
Bsa29I	ATCGAT	1 cut(s)	18
BsaHI	GRCGYC	1 cut(s)	800
BsaJI	CCNNGG	3 cut(s)	81, 604, 949
BsaXI	ACNNNNNCTCC	2 cut(s)	547, 577
Bse118I	RCCGGY	1 cut(s)	774
Bse1I	ACTGG	4 cut(s)	400, 655, 837, 896
BseBI	CCWGG	1 cut(s)	780
BseCI	ATCGAT	1 cut(s)	18
BseDI	CCNNGG	3 cut(s)	81, 604, 949
BseGI	GGATG	1 cut(s)	504
BseMII	CTCAG	3 cut(s)	257, 356, 373
BseNI	ACTGG	4 cut(s)	400, 655, 837, 896
BseRI	GAGGAG	1 cut(s)	147
BseXI	GCAGC	2 cut(s)	844, 872
Bsh1236I	CGCG	1 cut(s)	855
BshFI	GGCC	6 cut(s)	5, 349, 778, 793, 935, 954
BshVI	ATCGAT	1 cut(s)	18
BsiSI	CCGG	1 cut(s)	775
BslFI	GGGAC	2 cut(s)	359, 406
BsmAI	GTCTC	1 cut(s)	912
BsmBI	CGTCTC	1 cut(s)	912
BsmFI	GGGAC	2 cut(s)	359, 406
BsnI	GGCC	6 cut(s)	5, 349, 778, 793, 935, 954
Bsp143I	GATC	5 cut(s)	133, 200, 355, 651, 877
BspACI	CCGC	5 cut(s)	213, 390, 684, 725, 853
BspANI	GGCC	6 cut(s)	5, 349, 778, 793, 935, 954
BspCNI	CTCAG	3 cut(s)	256, 355, 372
BspDI	ATCGAT	1 cut(s)	18
BspFNI	CGCG	1 cut(s)	855
BspHI	TCATGA	1 cut(s)	540
BspLI	GGNNCC	1 cut(s)	225
BspMAI	CTGCAG	1 cut(s)	862
BspPI	GGATC	2 cut(s)	128, 646
BsrFI	RCCGGY	1 cut(s)	774
BsrI	ACTGG	4 cut(s)	400, 655, 837, 896
BssAI	RCCGGY	1 cut(s)	774
BssECI	CCNNGG	3 cut(s)	81, 604, 949
BssMI	GATC	5 cut(s)	133, 200, 355, 651, 877
BssNI	GRCGYC	1 cut(s)	800
BssT1I	CCWWGG	1 cut(s)	949
Bst2UI	CCWGG	1 cut(s)	780
Bst4CI	ACNGT	2 cut(s)	706, 923
Bst6I	CTCTTC	1 cut(s)	403
BstACI	GRCGYC	1 cut(s)	800
BstC8I	GCNNGC	1 cut(s)	669
BstDEI	CTNAG	4 cut(s)	243, 342, 359, 733
BstDSI	CCRYGG	1 cut(s)	604
BstF5I	GGATG	1 cut(s)	504
BstFNI	CGCG	1 cut(s)	855
BstH2I	RGCGCY	1 cut(s)	91
BstHHI	GCGC	2 cut(s)	90, 857
BstKTI	GATC	5 cut(s)	136, 203, 358, 654, 880
BstMAI	GTCTC	1 cut(s)	912
BstMBI	GATC	5 cut(s)	133, 200, 355, 651, 877
BstNI	CCWGG	1 cut(s)	780
BstSCI	CCNGG	1 cut(s)	778
BstSFI	CTRYAG	2 cut(s)	702, 858
BstUI	CGCG	1 cut(s)	855
BstV1I	GCAGC	2 cut(s)	844, 872
BstV2I	GAAGAC	1 cut(s)	638
BstX2I	RGATCY	1 cut(s)	355
BstXI	CCANNNNNNTGG	1 cut(s)	499
BstYI	RGATCY	1 cut(s)	355
Bsu15I	ATCGAT	1 cut(s)	18
BsuRI	GGCC	6 cut(s)	5, 349, 778, 793, 935, 954
BsuTUI	ATCGAT	1 cut(s)	18
BtgI	CCRYGG	1 cut(s)	604
BtsCI	GGATG	1 cut(s)	504
BtsIMutI	CAGTG	4 cut(s)	57, 350, 367, 928
Cac8I	GCNNGC	1 cut(s)	669
CciI	TCATGA	1 cut(s)	540
CfoI	GCGC	2 cut(s)	90, 857
Cfr10I	RCCGGY	1 cut(s)	774
Cfr13I	GGNCC	3 cut(s)	791, 912, 933
ClaI	ATCGAT	1 cut(s)	18
Csp6I	GTAC	2 cut(s)	78, 938
CviAII	CATG	2 cut(s)	273, 541
CviQI	GTAC	2 cut(s)	78, 938
DdeI	CTNAG	4 cut(s)	243, 342, 359, 733
DpnI	GATC	5 cut(s)	135, 202, 357, 653, 879
DpnII	GATC	5 cut(s)	133, 200, 355, 651, 877
EaeI	YGGCCR	2 cut(s)	3, 776
Eam1104I	CTCTTC	1 cut(s)	403
EarI	CTCTTC	1 cut(s)	403
Eco130I	CCWWGG	1 cut(s)	949
Eco147I	AGGCCT	1 cut(s)	954
Eco47I	GGWCC	1 cut(s)	912
Eco57I	CTGAAG	1 cut(s)	372
EcoO109I	RGGNCCY	1 cut(s)	791
EcoRII	CCWGG	1 cut(s)	778
EcoT14I	CCWWGG	1 cut(s)	949
ErhI	CCWWGG	1 cut(s)	949
Esp3I	CGTCTC	1 cut(s)	912
FaeI	CATG	2 cut(s)	276, 544
FaiI	YATR	8 cut(s)	211, 249, 260, 274, 288, 478, 480, 542
FaqI	GGGAC	2 cut(s)	359, 406
FatI	CATG	2 cut(s)	272, 540
FauI	CCCGC	2 cut(s)	383, 677
Fnu4HI	GCNGC	2 cut(s)	858, 861
FokI	GGATG	1 cut(s)	491
Fsp4HI	GCNGC	2 cut(s)	858, 861
GlaI	GCGC	2 cut(s)	89, 856
GluI	GCNGC	2 cut(s)	858, 861
HaeII	RGCGCY	1 cut(s)	91
HaeIII	GGCC	6 cut(s)	5, 349, 778, 793, 935, 954
HapII	CCGG	1 cut(s)	775
HhaI	GCGC	2 cut(s)	90, 857
Hin1I	GRCGYC	1 cut(s)	800
Hin1II	CATG	2 cut(s)	276, 544
Hin6I	GCGC	2 cut(s)	88, 855
HinP1I	GCGC	2 cut(s)	88, 855
HincII	GTYRAC	1 cut(s)	573
HindII	GTYRAC	1 cut(s)	573
HinfI	GANTC	2 cut(s)	116, 609
HpaII	CCGG	1 cut(s)	775
HphI	GGTGA	2 cut(s)	595, 811
Hpy166II	GTNNAC	2 cut(s)	573, 785
Hpy188I	TCNGA	6 cut(s)	11, 85, 115, 424, 651, 912
Hpy188III	TCNNGA	3 cut(s)	227, 541, 749
Hpy8I	GTNNAC	2 cut(s)	573, 785
Hpy99I	CGWCG	3 cut(s)	802, 805, 878
HpyAV	CCTTC	2 cut(s)	674, 826
HpyCH4III	ACNGT	2 cut(s)	706, 923
HpyCH4IV	ACGT	1 cut(s)	800
HpyCH4V	TGCA	4 cut(s)	32, 47, 104, 860
HpyF3I	CTNAG	4 cut(s)	243, 342, 359, 733
HpySE526I	ACGT	1 cut(s)	800
Hsp92I	GRCGYC	1 cut(s)	800
Hsp92II	CATG	2 cut(s)	276, 544
HspAI	GCGC	2 cut(s)	88, 855
Kzo9I	GATC	5 cut(s)	133, 200, 355, 651, 877
LmnI	GCTCC	3 cut(s)	85, 568, 631
Lsp1109I	GCAGC	2 cut(s)	844, 872
LweI	GCATC	3 cut(s)	24, 91, 613
MaeII	ACGT	1 cut(s)	800
MaeIII	GTNAC	2 cut(s)	440, 688
MalI	GATC	5 cut(s)	135, 202, 357, 653, 879
MboI	GATC	5 cut(s)	133, 200, 355, 651, 877
MboII	GAAGA	7 cut(s)	261, 365, 420, 598, 604, 638, 689
MfeI	CAATTG	1 cut(s)	253
MflI	RGATCY	1 cut(s)	355
MluCI	AATT	6 cut(s)	92, 253, 319, 524, 551, 961
MnlI	CCTC	6 cut(s)	91, 121, 168, 418, 771, 842
MseI	TTAA	3 cut(s)	318, 497, 518
MslI	CAYNNNNRTG	3 cut(s)	129, 208, 497
MspI	CCGG	1 cut(s)	775
MspR9I	CCNGG	1 cut(s)	780
MunI	CAATTG	1 cut(s)	253
MvaI	CCWGG	1 cut(s)	780
MvnI	CGCG	1 cut(s)	855
NdeII	GATC	5 cut(s)	133, 200, 355, 651, 877
NlaIII	CATG	2 cut(s)	276, 544
NlaIV	GGNNCC	1 cut(s)	225
NmuCI	GTSAC	1 cut(s)	440
PagI	TCATGA	1 cut(s)	540
PceI	AGGCCT	1 cut(s)	954
PfeI	GAWTC	2 cut(s)	116, 609
PflFI	GACNNNGTC	1 cut(s)	802
PkrI	GCNGC	2 cut(s)	859, 862
PshBI	ATTAAT	1 cut(s)	318
PsiI	TTATAA	1 cut(s)	288
Psp6I	CCWGG	1 cut(s)	778
PspGI	CCWGG	1 cut(s)	778
PspN4I	GGNNCC	1 cut(s)	225
PspPI	GGNCC	3 cut(s)	791, 912, 933
PstI	CTGCAG	1 cut(s)	862
PsuI	RGATCY	1 cut(s)	355
PsyI	GACNNNGTC	1 cut(s)	802
RsaI	GTAC	2 cut(s)	79, 939
RsaNI	GTAC	2 cut(s)	78, 938
RseI	CAYNNNNRTG	3 cut(s)	129, 208, 497
SaqAI	TTAA	3 cut(s)	318, 497, 518
SatI	GCNGC	2 cut(s)	858, 861
Sau3AI	GATC	5 cut(s)	133, 200, 355, 651, 877
Sau96I	GGNCC	3 cut(s)	791, 912, 933
ScrFI	CCNGG	1 cut(s)	780
SetI	ASST	8 cut(s)	83, 181, 703, 763, 784, 803, 818, 849
SfaNI	GCATC	3 cut(s)	24, 91, 613
SfcI	CTRYAG	2 cut(s)	702, 858
SinI	GGWCC	1 cut(s)	912
SmiMI	CAYNNNNRTG	3 cut(s)	129, 208, 497
Sse9I	AATT	6 cut(s)	92, 253, 319, 524, 551, 961
SseBI	AGGCCT	1 cut(s)	954
SsiI	CCGC	5 cut(s)	213, 390, 684, 725, 853
StuI	AGGCCT	1 cut(s)	954
StyD4I	CCNGG	1 cut(s)	778
StyI	CCWWGG	1 cut(s)	949
TaaI	ACNGT	2 cut(s)	706, 923
TaiI	ACGT	1 cut(s)	803
TaqI	TCGA	2 cut(s)	18, 876
TasI	AATT	6 cut(s)	92, 253, 319, 524, 551, 961
TfiI	GAWTC	2 cut(s)	116, 609
Tru1I	TTAA	3 cut(s)	318, 497, 518
Tru9I	TTAA	3 cut(s)	318, 497, 518
TscAI	CASTG	4 cut(s)	64, 350, 367, 928
TseFI	GTSAC	1 cut(s)	440
TseI	GCWGC	2 cut(s)	857, 860
Tsp45I	GTSAC	1 cut(s)	440
TspDTI	ATGAA	2 cut(s)	261, 859
TspRI	CASTG	4 cut(s)	64, 350, 367, 928
Tth111I	GACNNNGTC	1 cut(s)	802
VpaK11BI	GGWCC	1 cut(s)	912
VspI	ATTAAT	1 cut(s)	318
XapI	RAATTY	2 cut(s)	524, 551
XcmI	CCANNNNNNNNNTGG	2 cut(s)	183, 496
ZraI	GACGTC	1 cut(s)	801

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.