Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001516

Physical Location & Seq

Genomic Coordinates Forward (+)

18543940 .. 18546608

Gene Structure 2669 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30412

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGACTATGGATAGATATGCAGCTGCAGAAAGCTTCTATAAGCTTGCTATGGCATTTGCCCCTGTCCCAGATCTTCATATAATGTGGTTACTTCATTTATGTGATGCACATCAAGATATGCAGTCGTGGGCAGAATCTGCTCAGTGTGCTGTCGCTGTGGCTGGTATTGTAATGCAGTCTACTTTAATTCTGTCGGCTTTGATGGCCAGAAATGATGGTGTTTGGAGCAAAGATCACATAACTGCTCTGCGTAAAATTTGTCCAATGGTCAGTAGTGAGATCAGCTCTGAGGCTGCTGCAGCTGAGGTAGAGGGATATGGTGCATCAAAACTTACTGTTGACTCTGCCGTGAAGTACCTACAACTCGCAAATAAGCTCTTTTCTCAAGCTGAACTTTTTCATTTCTGTGCAAGCATTCTGGAACTTGTTATTCCAGTTTATAAAAGCAGGCGGGCATATGGACAGCTGAGCAAATGTCACACAATGCTTACTAATATATATGAATCAATCCTTGAGCAGGAATCAAGCCCAATTCCATTCACTGATGCAACATGCTATAGGGTAGGGTTTTATGGTGATAGATTTGGAAAATTAGACAGAAAGGAATATGTATACAGGGAGCCACGTGATGTAAGACCAGGTGACATAATGGAGAAACTTAGCCATAGCTACGAGTCTAGTATGGATGGAAATCACACCTTACACATCATTCCGGGTTCTAGGCAGGTAAAGGCAGATGAGTTGCAGTCTGGAGTATGCTATTTTCAGATAACTGCTGTTGATCCAGTCATGGAAGATGAAGATTTGGGAAGCAGAAGGAAGAGAATCTTCTCTCTTTCAACAGGAAGTGTTCGTGCCCGAGTCTTTGACCGCTTTTTGTTTGATACACCTTTTACGAAAAATGGAAAAACTCAAGGTGGATTGGAAGACCAGTGGAAGAGGCGGACTGTTCTTCAGACTGAAGGTTCATTCCCAGCTCTTGTTAACAGGCTTGTAGTTACTATATCCGAATCGCTTGAGTTCTCCCCTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0006810 GO:0008064 GO:0008150 GO:0008360 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009958 GO:0009966 GO:0009987 GO:0010646 GO:0010928 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0017016 GO:0017048 GO:0019898 GO:0019899 GO:0022603 GO:0022604 GO:0023051 GO:0030832 GO:0031267 GO:0032535 GO:0032956 GO:0032970 GO:0033043 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051020 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0065007 GO:0065008 GO:0065009 GO:0070971 GO:0071840 GO:0071944 GO:0090066 GO:0098772 GO:0110053 GO:1902903

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DHR-2 DOCK-C2

Protein Analysis

344

Amino Acids

38.64

Weight (kDa)

6.02

Isoelectric Point (pI)

49.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHR-2_Lobe_A	PF06920	13 - 172	2.3e-34	DHR-2, Lobe A
DHR-2_Lobe_B	PF20422	240 - 322	5e-23	DHR-2, Lobe B

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16340 AT4G16340
fragaria_vesca	FvH4_3g14770 FvH4_3g14770 FvH4_3g14770
malus_domestica	MD05G1229900.v1.1 MD05G1233200.v1.1 MD10G1209700.v1.1
prunus_persica	Prupe.3G108400_v2.0.a1 Prupe.4G132800_v2.0.a1
pyrus_communis	pycom05g21080 pycom05g21090 pycom10g17800 pycom10g17820
rosa_chinensis	RchiOBHm_Chr1g0327621 RchiOBHm_Chr3g0473981 RchiOBHm_Chr5g0024291 RchiOBHm_Chr5g0024301 RchiOBHm_Chr5g0024371 RchiOBHm_Chr5g0024381
rosa_laevigata	RLG00000029979 RLG00000032795 RLG00000036969
rosa_multiflora	Rmu_co8048528.1_g000001 Rmu_co8378897.1_g000002 Rmu_sc0005861.1_g000003 Rmu_sc0015218.1_g000005 Rmu_ssc0000042.1_g000009
rosa_roxburghii	Rroxscaffold_1G00054850 Rroxscaffold_1G00054890 Rroxscaffold_1G00055790 Rroxscaffold_1G00055850 Rroxscaffold_4G00322510
rosa_rugosa	Rorug01G0068800 Rorug05G0083000 Rorug05G0083100
rosa_samantha	Rh3AG187600 Rh3BG216300 Rh3CG212800 Rh5AG173700 Rh5BG170500 Rh5BG170900 Rh5BG171900 Rh5BG172000 Rh5CG186800 Rh5CG187500 Rh5CG187600 Rh5DG173100
rosa_wichuraiana	Rw0G000890 Rw3G017190 Rw5G015680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	441
Acc36I	ACCTGC	1 cut(s)	715
AccI	GTMKAC	2 cut(s)	179, 612
AciI	CCGC	3 cut(s)	451, 871, 943
AclWI	GGATC	1 cut(s)	776
AcoI	YGGCCR	1 cut(s)	204
AcsI	RAATTY	1 cut(s)	255
AcuI	CTGAAG	2 cut(s)	938, 981
AcvI	CACGTG	1 cut(s)	626
AfaI	GTAC	1 cut(s)	356
AfiI	CCNNNNNNNGG	1 cut(s)	517
AgsI	TTSAA	1 cut(s)	840
AjnI	CCWGG	1 cut(s)	637
AlwI	GGATC	1 cut(s)	776
AlwNI	CAGNNNCTG	1 cut(s)	137
Ama87I	CYCGRG	1 cut(s)	858
AoxI	GGCC	1 cut(s)	204
ApeKI	GCWGC	5 cut(s)	20, 23, 293, 296, 299
ApoI	RAATTY	1 cut(s)	255
Asp700I	GAANNNNTTC	1 cut(s)	396
AsuC2I	CCSGG	1 cut(s)	714
AsuHPI	GGTGA	2 cut(s)	587, 653
AvaI	CYCGRG	1 cut(s)	858
BaeGI	GKGCMC	1 cut(s)	859
BalI	TGGCCA	1 cut(s)	206
BbrPI	CACGTG	1 cut(s)	626
BbsI	GAAGAC	1 cut(s)	933
BbvCI	CCTCAGC	1 cut(s)	303
BbvI	GCAGC	5 cut(s)	10, 32, 280, 283, 311
BccI	CCATC	3 cut(s)	196, 209, 680
BceAI	ACGGC	1 cut(s)	332
BciT130I	CCWGG	1 cut(s)	639
BcnI	CCSGG	1 cut(s)	714
BfaI	CTAG	2 cut(s)	678, 720
BfmI	CTRYAG	3 cut(s)	24, 297, 556
BfuAI	ACCTGC	1 cut(s)	715
BglII	AGATCT	1 cut(s)	70
BisI	GCNGC	5 cut(s)	21, 24, 294, 297, 300
BlpI	GCTNAGC	1 cut(s)	467
BlsI	GCNGC	5 cut(s)	22, 25, 295, 298, 301
Bme1390I	CCNGG	2 cut(s)	639, 714
BmeT110I	CYCGRG	1 cut(s)	858
BmiI	GGNNCC	1 cut(s)	621
BmrFI	CCNGG	2 cut(s)	639, 714
BmsI	GCATC	3 cut(s)	94, 332, 535
BpiI	GAAGAC	1 cut(s)	933
BplI	GAGNNNNNCTC	2 cut(s)	269, 301
BpmI	CTGGAG	1 cut(s)	771
Bpu10I	CCTNAGC	1 cut(s)	303
Bpu1102I	GCTNAGC	1 cut(s)	467
BpuEI	CTTGAG	3 cut(s)	369, 533, 897
BpuMI	CCSGG	1 cut(s)	714
BsaAI	YACGTR	1 cut(s)	626
BsaBI	GATNNNNATC	2 cut(s)	108, 690
Bsc4I	CCNNNNNNNGG	1 cut(s)	517
Bse1I	ACTGG	3 cut(s)	434, 785, 931
Bse8I	GATNNNNATC	2 cut(s)	108, 690
BseBI	CCWGG	1 cut(s)	639
BseGI	GGATG	1 cut(s)	691
BseJI	GATNNNNATC	2 cut(s)	108, 690
BseLI	CCNNNNNNNGG	1 cut(s)	517
BseMII	CTCAG	4 cut(s)	155, 279, 294, 458
BseNI	ACTGG	3 cut(s)	434, 785, 931
BseSI	GKGCMC	1 cut(s)	859
BseXI	GCAGC	5 cut(s)	10, 32, 280, 283, 311
BseYI	CCCAGC	1 cut(s)	973
BshFI	GGCC	1 cut(s)	206
BsiHKCI	CYCGRG	1 cut(s)	858
BsiSI	CCGG	1 cut(s)	713
BslFI	GGGAC	1 cut(s)	50
BslI	CCNNNNNNNGG	1 cut(s)	517
BsmFI	GGGAC	1 cut(s)	50
BsmI	GAATGC	1 cut(s)	414
BsnI	GGCC	1 cut(s)	206
BsoBI	CYCGRG	1 cut(s)	858
Bsp1286I	GDGCHC	1 cut(s)	859
Bsp143I	GATC	4 cut(s)	70, 232, 279, 781
Bsp1720I	GCTNAGC	1 cut(s)	467
BspACI	CCGC	3 cut(s)	451, 871, 943
BspANI	GGCC	1 cut(s)	206
BspCNI	CTCAG	4 cut(s)	154, 280, 295, 459
BspLI	GGNNCC	1 cut(s)	621
BspMAI	CTGCAG	2 cut(s)	28, 301
BspMI	ACCTGC	1 cut(s)	715
BspPI	GGATC	1 cut(s)	776
BsrI	ACTGG	3 cut(s)	434, 785, 931
BssMI	GATC	4 cut(s)	70, 232, 279, 781
BssNAI	GTATAC	1 cut(s)	613
Bst1107I	GTATAC	1 cut(s)	613
Bst2UI	CCWGG	1 cut(s)	639
Bst4CI	ACNGT	2 cut(s)	337, 949
Bst6I	CTCTTC	2 cut(s)	815, 932
BstAPI	GCANNNNNTGC	1 cut(s)	137
BstBAI	YACGTR	1 cut(s)	626
BstC8I	GCNNGC	4 cut(s)	45, 412, 449, 453
BstDEI	CTNAG	5 cut(s)	141, 288, 303, 467, 659
BstENI	CCTNNNNNAGG	1 cut(s)	515
BstF5I	GGATG	1 cut(s)	691
BstKTI	GATC	4 cut(s)	73, 235, 282, 784
BstMBI	GATC	4 cut(s)	70, 232, 279, 781
BstMWI	GCNNNNNNNGC	4 cut(s)	137, 146, 203, 299
BstNI	CCWGG	1 cut(s)	639
BstNSI	RCATGY	1 cut(s)	555
BstSCI	CCNGG	2 cut(s)	637, 712
BstSFI	CTRYAG	3 cut(s)	24, 297, 556
BstSLI	GKGCMC	1 cut(s)	859
BstV1I	GCAGC	5 cut(s)	10, 32, 280, 283, 311
BstV2I	GAAGAC	1 cut(s)	933
BstX2I	RGATCY	1 cut(s)	70
BstYI	RGATCY	1 cut(s)	70
BstZ17I	GTATAC	1 cut(s)	613
BsuRI	GGCC	1 cut(s)	206
BtsCI	GGATG	1 cut(s)	691
BtsIMutI	CAGTG	3 cut(s)	149, 540, 938
BveI	ACCTGC	1 cut(s)	715
Cac8I	GCNNGC	4 cut(s)	45, 412, 449, 453
CaiI	CAGNNNCTG	1 cut(s)	137
CsiI	ACCWGGT	1 cut(s)	637
Csp6I	GTAC	1 cut(s)	355
CviAII	CATG	2 cut(s)	552, 790
CviQI	GTAC	1 cut(s)	355
DdeI	CTNAG	5 cut(s)	141, 288, 303, 467, 659
DpnI	GATC	4 cut(s)	72, 234, 281, 783
DpnII	GATC	4 cut(s)	70, 232, 279, 781
EaeI	YGGCCR	1 cut(s)	204
Eam1104I	CTCTTC	2 cut(s)	815, 932
EarI	CTCTTC	2 cut(s)	815, 932
EciI	GGCGGA	1 cut(s)	958
Eco57I	CTGAAG	2 cut(s)	938, 981
Eco72I	CACGTG	1 cut(s)	626
Eco88I	CYCGRG	1 cut(s)	858
EcoNI	CCTNNNNNAGG	1 cut(s)	515
EcoRII	CCWGG	1 cut(s)	637
FaeI	CATG	2 cut(s)	555, 793
FalI	AAGNNNNNCTT	4 cut(s)	378, 410, 812, 844
FaqI	GGGAC	1 cut(s)	50
FatI	CATG	2 cut(s)	551, 789
FauI	CCCGC	1 cut(s)	444
FauNDI	CATATG	1 cut(s)	457
FblI	GTMKAC	2 cut(s)	179, 612
Fnu4HI	GCNGC	5 cut(s)	21, 24, 294, 297, 300
FokI	GGATG	1 cut(s)	698
Fsp4HI	GCNGC	5 cut(s)	21, 24, 294, 297, 300
FspBI	CTAG	2 cut(s)	678, 720
GluI	GCNGC	5 cut(s)	21, 24, 294, 297, 300
GsaI	CCCAGC	1 cut(s)	977
GsuI	CTGGAG	1 cut(s)	771
HaeIII	GGCC	1 cut(s)	206
HapII	CCGG	1 cut(s)	713
Hin1II	CATG	2 cut(s)	555, 793
HincII	GTYRAC	2 cut(s)	340, 985
HindII	GTYRAC	2 cut(s)	340, 985
HindIII	AAGCTT	2 cut(s)	31, 41
HinfI	GANTC	8 cut(s)	134, 341, 503, 521, 674, 825, 861, 1010
HpaI	GTTAAC	1 cut(s)	985
HpaII	CCGG	1 cut(s)	713
HphI	GGTGA	2 cut(s)	587, 653
Hpy166II	GTNNAC	4 cut(s)	180, 340, 613, 985
Hpy188I	TCNGA	4 cut(s)	289, 768, 957, 1009
Hpy188III	TCNNGA	3 cut(s)	113, 419, 750
Hpy8I	GTNNAC	4 cut(s)	180, 340, 613, 985
HpyAV	CCTTC	2 cut(s)	810, 956
HpyCH4III	ACNGT	2 cut(s)	337, 949
HpyCH4IV	ACGT	1 cut(s)	625
HpyF10VI	GCNNNNNNNGC	4 cut(s)	137, 146, 203, 299
HpyF3I	CTNAG	5 cut(s)	141, 288, 303, 467, 659
HpySE526I	ACGT	1 cut(s)	625
Hsp92II	CATG	2 cut(s)	555, 793
KspAI	GTTAAC	1 cut(s)	985
Kzo9I	GATC	4 cut(s)	70, 232, 279, 781
LmnI	GCTCC	2 cut(s)	225, 619
Lsp1109I	GCAGC	5 cut(s)	10, 32, 280, 283, 311
LweI	GCATC	3 cut(s)	94, 332, 535
MabI	ACCWGGT	1 cut(s)	637
MaeI	CTAG	2 cut(s)	678, 720
MaeII	ACGT	1 cut(s)	625
MaeIII	GTNAC	4 cut(s)	87, 476, 641, 997
MalI	GATC	4 cut(s)	72, 234, 281, 783
MboI	GATC	4 cut(s)	70, 232, 279, 781
MboII	GAAGA	8 cut(s)	65, 806, 812, 820, 832, 938, 944, 949
MflI	RGATCY	1 cut(s)	70
MhlI	GDGCHC	1 cut(s)	859
MlsI	TGGCCA	1 cut(s)	206
MluCI	AATT	4 cut(s)	186, 255, 531, 590
MluNI	TGGCCA	1 cut(s)	206
MlyI	GAGTC	3 cut(s)	335, 683, 870
MnlI	CCTC	4 cut(s)	283, 298, 304, 933
Mox20I	TGGCCA	1 cut(s)	206
MroXI	GAANNNNTTC	1 cut(s)	396
MscI	TGGCCA	1 cut(s)	206
MseI	TTAA	2 cut(s)	185, 984
MslI	CAYNNNNRTG	2 cut(s)	99, 405
Msp20I	TGGCCA	1 cut(s)	206
MspA1I	CMGCKG	3 cut(s)	23, 302, 466
MspI	CCGG	1 cut(s)	713
MspR9I	CCNGG	2 cut(s)	639, 714
Mva1269I	GAATGC	1 cut(s)	414
MvaI	CCWGG	1 cut(s)	639
MwoI	GCNNNNNNNGC	4 cut(s)	137, 146, 203, 299
NciI	CCSGG	1 cut(s)	714
NdeI	CATATG	1 cut(s)	457
NdeII	GATC	4 cut(s)	70, 232, 279, 781
NlaIII	CATG	2 cut(s)	555, 793
NlaIV	GGNNCC	1 cut(s)	621
NmuCI	GTSAC	2 cut(s)	476, 641
NspI	RCATGY	1 cut(s)	555
PctI	GAATGC	1 cut(s)	414
PdmI	GAANNNNTTC	1 cut(s)	396
PfeI	GAWTC	5 cut(s)	134, 503, 521, 825, 1010
PkrI	GCNGC	5 cut(s)	22, 25, 295, 298, 301
PleI	GAGTC	3 cut(s)	335, 682, 869
PmaCI	CACGTG	1 cut(s)	626
PmlI	CACGTG	1 cut(s)	626
PpsI	GAGTC	3 cut(s)	335, 682, 869
Ppu21I	YACGTR	1 cut(s)	626
PsiI	TTATAA	1 cut(s)	441
Psp6I	CCWGG	1 cut(s)	637
PspCI	CACGTG	1 cut(s)	626
PspFI	CCCAGC	1 cut(s)	973
PspGI	CCWGG	1 cut(s)	637
PspN4I	GGNNCC	1 cut(s)	621
PstI	CTGCAG	2 cut(s)	28, 301
PstNI	CAGNNNCTG	1 cut(s)	137
PsuI	RGATCY	1 cut(s)	70
PvuII	CAGCTG	3 cut(s)	23, 302, 466
RsaI	GTAC	1 cut(s)	356
RsaNI	GTAC	1 cut(s)	355
RseI	CAYNNNNRTG	2 cut(s)	99, 405
SaqAI	TTAA	2 cut(s)	185, 984
SatI	GCNGC	5 cut(s)	21, 24, 294, 297, 300
Sau3AI	GATC	4 cut(s)	70, 232, 279, 781
SchI	GAGTC	3 cut(s)	335, 683, 870
ScrFI	CCNGG	2 cut(s)	639, 714
SduI	GDGCHC	1 cut(s)	859
SexAI	ACCWGGT	1 cut(s)	637
SfaNI	GCATC	3 cut(s)	94, 332, 535
SfcI	CTRYAG	3 cut(s)	24, 297, 556
SmiMI	CAYNNNNRTG	2 cut(s)	99, 405
SmlI	CTYRAG	4 cut(s)	384, 512, 912, 1016
SmoI	CTYRAG	4 cut(s)	384, 512, 912, 1016
Sse9I	AATT	4 cut(s)	186, 255, 531, 590
SsiI	CCGC	3 cut(s)	451, 871, 943
SspMI	CTAG	2 cut(s)	678, 720
StyD4I	CCNGG	2 cut(s)	637, 712
TaaI	ACNGT	2 cut(s)	337, 949
TaiI	ACGT	1 cut(s)	628
TasI	AATT	4 cut(s)	186, 255, 531, 590
TfiI	GAWTC	5 cut(s)	134, 503, 521, 825, 1010
Tru1I	TTAA	2 cut(s)	185, 984
Tru9I	TTAA	2 cut(s)	185, 984
TscAI	CASTG	3 cut(s)	149, 547, 938
TseFI	GTSAC	2 cut(s)	476, 641
TseI	GCWGC	5 cut(s)	20, 23, 293, 296, 299
Tsp45I	GTSAC	2 cut(s)	476, 641
TspDTI	ATGAA	6 cut(s)	65, 83, 389, 516, 813, 957
TspRI	CASTG	3 cut(s)	149, 547, 938
XagI	CCTNNNNNAGG	1 cut(s)	515
XapI	RAATTY	1 cut(s)	255
XceI	RCATGY	1 cut(s)	555
XmiI	GTMKAC	2 cut(s)	179, 612
XmnI	GAANNNNTTC	1 cut(s)	396
XspI	CTAG	2 cut(s)	678, 720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.