Rorug01G0068800

Belongs to the DOCK family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
11298528 .. 11305836
7309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0068800.1

Sequence Viewer

Length: 1791 bp
ATGCTTGGTTTTTCTGCTGCTGCTCGTGCGGCTACATCACCCAACACCAATCTTGTCCTGCTATTCTCCACCAAGCTGCCAATTGTTGATTCTTCTTCTTTCTCTTCTTTCACGTCTTGCTCAGTGAGGAACTCATCTTGGCTGCATACCAGTTGCAGACCAATTAATGCCGTGGCTGCCCAAGAGGCTCAATCCTCAGCCTCAGCCACAGGTGATAGGCAGGCTCTGATATCTTTGTCAGACAAAAACAATCTTGCCTTCTTAGGGAATGGGCTTCAGAACTTGGGATATAAAATTGTTTCCACTGGAGGAACTGCATCTGCTTTAGAAAGTGCCGGGGTGTCTGTCACTAAAGTTGAAGAACTTACTTGCTTCCCGGAGATGCTTGATGGTCGTGTAAAAACTTTACACCCCAACATTCATGGGGGTATCCTTGCTAGAAGAGACCAAAAGCATCATATGGAAGCTCTTAGTAATCACGGAATTGGTACTTTCGATATGGTTGTGGTGAATTTATATCCCTTTTATGATAAAGTTAATTCAAAGGGAGGAATAGAATTTGAGGATGGAATCGAGAATATAGATATTGGTGGTCCTGCCATGATTAGAGCTGCCGCAAAGAATCACAAAGATGTCCTGGTGGTTGTTGATTCAGAAGACTATCCTGCACTGCTAGAATATCTTAAAGCGGACAAGGATGATCAACAGTTCCGAAGAAACCTTGCGTGGAAGGCTTTTCAACATGTTGCTTCTTATGATTCTGCTGTTTCAGAGTGGCTTTGGAGGCAGACTACTGAAGATAAATTCCCTCCTAGCTTAACAGTTCCTCTATTGCTGAAAAGTCCCCTTCGGTATGGTGAAAATCCTCATCAAAAGGCTGCATTCTATGTTGATAAGAGTCTTTCTGAGGTTAATGCTGGTGGCATTGCAACTGCTATTCAACATCATGGAAAGGAGATGTCATATAATAACTATTTAGATGCTGATGCAGCTTGGAATTGTGTGTCAGAGTTCAGAAGTCCTACTTGTGTTGTTGTAAAACATACAAATCCTTGTGGTGTAGCATCACGTGATGATATACTTGACGCATACAGGCTTGCTGTCAAAGCAGATCCAGTGAGTGCATTTGGTGGCATTGTAGCTTTCAACATAGAGGTTGATGAGGGTCTTGCTAAAGAAATCCGTGAGTTTAGAAGCCCAACAGATGGTGAAACTCGGACGTTTTATGAGATTGTGGTTGCACCCAAGTATTCAAAGAAAGGACTCGAAATCCTTCGTGGAAAATCAAAGACTCTGAGGATCCTCGAGGCAAGCAAAAATGAGAAAGGAAAACTTTCGCTTAGACAGGTTGGTGGTGGGTGGTTAGCCCAGGAGTCGGATGATTTAATTCCCCAAGATATCCAGTTTAATGTTGTGTCTAAGAAGTCTCCACAAGAAAGTGAGCTCAGTGATGCAGAGTTTGCATGGTTGTGTGCCAAACATGTCAAAAGCAATGCAATTGTAATAGCAAAGAATAACTGTATGTTGGGTATGGGAAGTGGACAACCGAACCGTTTGGAGAGTTTAAGAATAGCATTGAGGAAAGCAGGAGAGGAGGTCAAGGGTGCAGCTTTGGCTAGTGATGCCTTCTTCCCATTCGCTTGGAAAGATGCCGTGGAAGAAGCATGCGAAAGTGGAGTCAGTGTTATTGCAGAACCTGGTGGCAGTATAAGAGACGGAGATGCTATAGATTGCTGCAACAAGTATGGTGTTTCACTTGTTCTCACTAATGTGAGGCACTTCAGGCATTAA

Protein Analysis

596

Amino Acids

64.89

Weight (kDa)

6.14

Isoelectric Point (pI)

44.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MGS PF02142 88 - 199 4.6e-21 MGS-like domain
AICARFT_IMPCHas PF01808 205 - 528 1.7e-113 AICARFT/IMPCHase bienzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 1304
AccB7I CCANNNNNTGG 1 cut(s) 1205
AciI CCGC 3 cut(s) 29, 615, 689
AclWI GGATC 3 cut(s) 1106, 1294, 1307
AcsI RAATTY 3 cut(s) 511, 557, 803
AcuI CTGAAG 3 cut(s) 260, 816, 1765
AcvI CACGTG 1 cut(s) 1070
AfaI GTAC 1 cut(s) 490
AfiI CCNNNNNNNGG 3 cut(s) 264, 1205, 1375
AflIII ACRYGT 2 cut(s) 742, 1480
AgsI TTSAA 6 cut(s) 359, 543, 740, 941, 1147, 1254
AjiI CACGTC 1 cut(s) 114
AjnI CCWGG 3 cut(s) 636, 1368, 1696
AjuI GAANNNNNNNTTGG 2 cut(s) 73, 105
AleI CACNNNNGTG 1 cut(s) 1769
AluBI AGCT 8 cut(s) 76, 467, 611, 816, 992, 1142, 1444, 1610
AluI AGCT 8 cut(s) 76, 467, 611, 816, 992, 1142, 1444, 1610
Alw21I GWGCWC 1 cut(s) 1446
Alw26I GTCTC 3 cut(s) 438, 1431, 1707
AlwI GGATC 3 cut(s) 1106, 1294, 1307
AlwNI CAGNNNCTG 2 cut(s) 226, 1697
Ama87I CYCGRG 1 cut(s) 1304
ApoI RAATTY 3 cut(s) 511, 557, 803
ArsI GACNNNNNNTTYG 2 cut(s) 1662, 1694
AseI ATTAAT 1 cut(s) 165
Asp700I GAANNNNTTC 2 cut(s) 1272, 1333
AspS9I GGNCC 1 cut(s) 593
AsuC2I CCSGG 2 cut(s) 337, 377
AsuHPI GGTGA 5 cut(s) 30, 224, 520, 869, 1220
AvaI CYCGRG 1 cut(s) 1304
AvaII GGWCC 1 cut(s) 593
BamHI GGATCC 1 cut(s) 1299
BanII GRGCYC 1 cut(s) 1446
BauI CACGAG 1 cut(s) 24
BbrPI CACGTG 1 cut(s) 1070
BbsI GAAGAC 1 cut(s) 663
Bbv12I GWGCWC 1 cut(s) 1446
BbvCI CCTCAGC 2 cut(s) 196, 202
BccI CCATC 3 cut(s) 383, 560, 1199
BceAI ACGGC 2 cut(s) 155, 1637
BciT130I CCWGG 3 cut(s) 638, 1370, 1698
BciVI GTATCC 1 cut(s) 440
BclI TGATCA 1 cut(s) 700
BcnI CCSGG 2 cut(s) 337, 377
BcoDI GTCTC 3 cut(s) 438, 1431, 1707
BfaI CTAG 4 cut(s) 438, 674, 813, 1617
BfmI CTRYAG 1 cut(s) 1725
BfuI GTATCC 1 cut(s) 440
BglI GCCNNNNNGGC 1 cut(s) 185
Bme1390I CCNGG 5 cut(s) 337, 377, 638, 1370, 1698
Bme18I GGWCC 1 cut(s) 593
BmeT110I CYCGRG 1 cut(s) 1304
BmgBI CACGTC 1 cut(s) 114
BmgT120I GGNCC 1 cut(s) 593
BmiI GGNNCC 1 cut(s) 1301
BmrFI CCNGG 5 cut(s) 337, 377, 638, 1370, 1698
BpiI GAAGAC 1 cut(s) 663
BpmI CTGGAG 1 cut(s) 327
Bpu10I CCTNAGC 2 cut(s) 196, 202
BpuMI CCSGG 2 cut(s) 337, 377
BsaAI YACGTR 1 cut(s) 1070
BsaI GGTCTC 1 cut(s) 438
BsaJI CCNNGG 4 cut(s) 171, 336, 1368, 1653
BsaXI ACNNNNNCTCC 4 cut(s) 1581, 1611, 1668, 1698
Bsc4I CCNNNNNNNGG 3 cut(s) 264, 1205, 1375
Bse1I ACTGG 4 cut(s) 150, 310, 1115, 1402
Bse3DI GCAATG 2 cut(s) 924, 1498
BseBI CCWGG 3 cut(s) 638, 1370, 1698
BseDI CCNNGG 4 cut(s) 171, 336, 1368, 1653
BseGI GGATG 3 cut(s) 571, 703, 1384
BseLI CCNNNNNNNGG 3 cut(s) 264, 1205, 1375
BseMI GCAATG 2 cut(s) 924, 1498
BseMII CTCAG 6 cut(s) 135, 210, 216, 897, 1286, 1459
BseNI ACTGG 4 cut(s) 150, 310, 1115, 1402
BseRI GAGGAG 1 cut(s) 1607
BsgI GTGCAG 2 cut(s) 651, 1626
BsiHKAI GWGCWC 1 cut(s) 1446
BsiHKCI CYCGRG 1 cut(s) 1304
BsiSI CCGG 2 cut(s) 336, 377
BslFI GGGAC 1 cut(s) 828
BslI CCNNNNNNNGG 3 cut(s) 264, 1205, 1375
BsmAI GTCTC 3 cut(s) 438, 1431, 1707
BsmBI CGTCTC 1 cut(s) 1707
BsmFI GGGAC 1 cut(s) 828
BsmI GAATGC 1 cut(s) 881
Bso31I GGTCTC 1 cut(s) 438
BsoBI CYCGRG 1 cut(s) 1304
Bsp1286I GDGCHC 1 cut(s) 1446
Bsp143I GATC 3 cut(s) 700, 1111, 1299
BspACI CCGC 3 cut(s) 29, 615, 689
BspCNI CTCAG 6 cut(s) 134, 209, 215, 898, 1287, 1458
BspLI GGNNCC 1 cut(s) 1301
BspPI GGATC 3 cut(s) 1106, 1294, 1307
BspTNI GGTCTC 1 cut(s) 438
BsrDI GCAATG 2 cut(s) 924, 1498
BsrI ACTGG 4 cut(s) 150, 310, 1115, 1402
BssECI CCNNGG 4 cut(s) 171, 336, 1368, 1653
BssMI GATC 3 cut(s) 700, 1111, 1299
BssSI CACGAG 1 cut(s) 24
Bst2BI CACGAG 1 cut(s) 24
Bst2UI CCWGG 3 cut(s) 638, 1370, 1698
Bst4CI ACNGT 4 cut(s) 708, 823, 1520, 1553
Bst6I CTCTTC 2 cut(s) 109, 436
BstAPI GCANNNNNTGC 1 cut(s) 1460
BstBAI YACGTR 1 cut(s) 1070
BstC8I GCNNGC 4 cut(s) 222, 1098, 1312, 1666
BstDSI CCRYGG 2 cut(s) 171, 1653
BstF5I GGATG 3 cut(s) 571, 703, 1384
BstKTI GATC 3 cut(s) 703, 1114, 1302
BstMAI GTCTC 3 cut(s) 438, 1431, 1707
BstMBI GATC 3 cut(s) 700, 1111, 1299
BstNI CCWGG 3 cut(s) 638, 1370, 1698
BstNSI RCATGY 3 cut(s) 746, 1484, 1668
BstSCI CCNGG 5 cut(s) 335, 375, 636, 1368, 1696
BstSFI CTRYAG 1 cut(s) 1725
BstV2I GAAGAC 1 cut(s) 663
BstX2I RGATCY 2 cut(s) 1111, 1299
BstXI CCANNNNNNTGG 1 cut(s) 1641
BstYI RGATCY 2 cut(s) 1111, 1299
BsuI GTATCC 1 cut(s) 440
BtgI CCRYGG 2 cut(s) 171, 1653
BtrI CACGTC 1 cut(s) 114
BtsCI GGATG 3 cut(s) 571, 703, 1384
BtsI GCAGTG 1 cut(s) 668
BtsIMutI CAGTG 6 cut(s) 129, 303, 668, 1122, 1453, 1687
Cac8I GCNNGC 4 cut(s) 222, 1098, 1312, 1666
CaiI CAGNNNCTG 2 cut(s) 226, 1697
Cfr13I GGNCC 1 cut(s) 593
CseI GACGC 1 cut(s) 1094
CsiI ACCWGGT 1 cut(s) 1696
Csp6I GTAC 1 cut(s) 489
CviAII CATG 7 cut(s) 422, 601, 743, 947, 1464, 1481, 1665
CviQI GTAC 1 cut(s) 489
DpnI GATC 3 cut(s) 702, 1113, 1301
DpnII GATC 3 cut(s) 700, 1111, 1299
Eam1104I CTCTTC 2 cut(s) 109, 436
EarI CTCTTC 2 cut(s) 109, 436
Ecl136II GAGCTC 1 cut(s) 1444
Eco24I GRGCYC 1 cut(s) 1446
Eco31I GGTCTC 1 cut(s) 438
Eco32I GATATC 2 cut(s) 231, 1399
Eco47I GGWCC 1 cut(s) 593
Eco53kI GAGCTC 1 cut(s) 1444
Eco57I CTGAAG 3 cut(s) 260, 816, 1765
Eco72I CACGTG 1 cut(s) 1070
Eco88I CYCGRG 1 cut(s) 1304
EcoICRI GAGCTC 1 cut(s) 1444
EcoRII CCWGG 3 cut(s) 636, 1368, 1696
EcoRV GATATC 2 cut(s) 231, 1399
EcoT38I GRGCYC 1 cut(s) 1446
Esp3I CGTCTC 1 cut(s) 1707
FaeI CATG 7 cut(s) 425, 604, 746, 950, 1467, 1484, 1668
FalI AAGNNNNNCTT 4 cut(s) 1009, 1041, 1317, 1349
FaqI GGGAC 1 cut(s) 828
FatI CATG 7 cut(s) 421, 600, 742, 946, 1463, 1480, 1664
FauNDI CATATG 1 cut(s) 459
FbaI TGATCA 1 cut(s) 700
FokI GGATG 3 cut(s) 578, 710, 1391
FriOI GRGCYC 1 cut(s) 1446
FspBI CTAG 4 cut(s) 438, 674, 813, 1617
GsuI CTGGAG 1 cut(s) 327
HapII CCGG 2 cut(s) 336, 377
HgaI GACGC 1 cut(s) 1094
Hin1II CATG 7 cut(s) 425, 604, 746, 950, 1467, 1484, 1668
HpaII CCGG 2 cut(s) 336, 377
HphI GGTGA 5 cut(s) 30, 224, 520, 869, 1220
Hpy166II GTNNAC 1 cut(s) 1541
Hpy188III TCNNGA 1 cut(s) 574
Hpy8I GTNNAC 1 cut(s) 1541
HpyAV CCTTC 5 cut(s) 268, 724, 857, 1283, 1636
HpyCH4III ACNGT 4 cut(s) 708, 823, 1520, 1553
HpyCH4IV ACGT 3 cut(s) 113, 1069, 1220
HpySE526I ACGT 3 cut(s) 113, 1069, 1220
Hsp92II CATG 7 cut(s) 425, 604, 746, 950, 1467, 1484, 1668
Ksp22I TGATCA 1 cut(s) 700
Kzo9I GATC 3 cut(s) 700, 1111, 1299
MabI ACCWGGT 1 cut(s) 1696
MaeI CTAG 4 cut(s) 438, 674, 813, 1617
MaeII ACGT 3 cut(s) 113, 1069, 1220
MaeIII GTNAC 1 cut(s) 346
MalI GATC 3 cut(s) 702, 1113, 1301
MboI GATC 3 cut(s) 700, 1111, 1299
MfeI CAATTG 2 cut(s) 81, 1497
MflI RGATCY 2 cut(s) 1111, 1299
MhlI GDGCHC 1 cut(s) 1446
MlyI GAGTC 5 cut(s) 907, 1257, 1285, 1382, 1686
MmeI TCCRAC 1 cut(s) 1356
MroXI GAANNNNTTC 2 cut(s) 1272, 1333
MseI TTAA 9 cut(s) 165, 537, 684, 818, 912, 1385, 1407, 1565, 1789
MslI CAYNNNNRTG 3 cut(s) 630, 1468, 1769
MspI CCGG 2 cut(s) 336, 377
MspR9I CCNGG 5 cut(s) 337, 377, 638, 1370, 1698
MunI CAATTG 2 cut(s) 81, 1497
Mva1269I GAATGC 1 cut(s) 881
MvaI CCWGG 3 cut(s) 638, 1370, 1698
NciI CCSGG 2 cut(s) 337, 377
NdeI CATATG 1 cut(s) 459
NdeII GATC 3 cut(s) 700, 1111, 1299
NlaIII CATG 7 cut(s) 425, 604, 746, 950, 1467, 1484, 1668
NlaIV GGNNCC 1 cut(s) 1301
NmuCI GTSAC 1 cut(s) 346
NspI RCATGY 3 cut(s) 746, 1484, 1668
OliI CACNNNNGTG 1 cut(s) 1769
PaeI GCATGC 1 cut(s) 1668
PaeR7I CTCGAG 1 cut(s) 1304
PciI ACATGT 2 cut(s) 742, 1480
PctI GAATGC 1 cut(s) 881
PdmI GAANNNNTTC 2 cut(s) 1272, 1333
PfeI GAWTC 5 cut(s) 89, 570, 622, 650, 758
PflMI CCANNNNNTGG 1 cut(s) 1205
PfoI TCCNGGA 1 cut(s) 375
PleI GAGTC 5 cut(s) 906, 1257, 1285, 1381, 1685
PmaCI CACGTG 1 cut(s) 1070
PmlI CACGTG 1 cut(s) 1070
PpsI GAGTC 5 cut(s) 906, 1257, 1285, 1381, 1685
Ppu21I YACGTR 1 cut(s) 1070
PscI ACATGT 2 cut(s) 742, 1480
PshBI ATTAAT 1 cut(s) 165
Psp124BI GAGCTC 1 cut(s) 1446
Psp6I CCWGG 3 cut(s) 636, 1368, 1696
PspCI CACGTG 1 cut(s) 1070
PspGI CCWGG 3 cut(s) 636, 1368, 1696
PspN4I GGNNCC 1 cut(s) 1301
PspPI GGNCC 1 cut(s) 593
PspXI VCTCGAGB 1 cut(s) 1304
PstNI CAGNNNCTG 2 cut(s) 226, 1697
PsuI RGATCY 2 cut(s) 1111, 1299
RsaI GTAC 1 cut(s) 490
RsaNI GTAC 1 cut(s) 489
RseI CAYNNNNRTG 3 cut(s) 630, 1468, 1769
SacI GAGCTC 1 cut(s) 1446
SaqAI TTAA 9 cut(s) 165, 537, 684, 818, 912, 1385, 1407, 1565, 1789
Sau3AI GATC 3 cut(s) 700, 1111, 1299
Sau96I GGNCC 1 cut(s) 593
SchI GAGTC 5 cut(s) 907, 1257, 1285, 1382, 1686
ScrFI CCNGG 5 cut(s) 337, 377, 638, 1370, 1698
SduI GDGCHC 1 cut(s) 1446
SexAI ACCWGGT 1 cut(s) 1696
SfcI CTRYAG 1 cut(s) 1725
Sfr274I CTCGAG 1 cut(s) 1304
SinI GGWCC 1 cut(s) 593
SlaI CTCGAG 1 cut(s) 1304
SmiMI CAYNNNNRTG 3 cut(s) 630, 1468, 1769
SmlI CTYRAG 1 cut(s) 1304
SmoI CTYRAG 1 cut(s) 1304
SphI GCATGC 1 cut(s) 1668
SsiI CCGC 3 cut(s) 29, 615, 689
SspMI CTAG 4 cut(s) 438, 674, 813, 1617
SstI GAGCTC 1 cut(s) 1446
StyD4I CCNGG 5 cut(s) 335, 375, 636, 1368, 1696
TaaI ACNGT 4 cut(s) 708, 823, 1520, 1553
TaiI ACGT 3 cut(s) 116, 1072, 1223
TaqI TCGA 4 cut(s) 495, 573, 1266, 1305
TauI GCSGC 2 cut(s) 32, 617
TfiI GAWTC 5 cut(s) 89, 570, 622, 650, 758
Tru1I TTAA 9 cut(s) 165, 537, 684, 818, 912, 1385, 1407, 1565, 1789
Tru9I TTAA 9 cut(s) 165, 537, 684, 818, 912, 1385, 1407, 1565, 1789
TscAI CASTG 6 cut(s) 129, 310, 675, 1122, 1453, 1687
TseFI GTSAC 1 cut(s) 346
Tsp45I GTSAC 1 cut(s) 346
TspDTI ATGAA 1 cut(s) 410
TspGWI ACGGA 3 cut(s) 495, 1172, 1731
TspRI CASTG 6 cut(s) 129, 310, 675, 1122, 1453, 1687
Van91I CCANNNNNTGG 1 cut(s) 1205
VpaK11BI GGWCC 1 cut(s) 593
VspI ATTAAT 1 cut(s) 165
XapI RAATTY 3 cut(s) 511, 557, 803
XceI RCATGY 3 cut(s) 746, 1484, 1668
XhoI CTCGAG 1 cut(s) 1304
XmnI GAANNNNTTC 2 cut(s) 1272, 1333
XspI CTAG 4 cut(s) 438, 674, 813, 1617
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.