Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001516

Physical Location & Seq

Genomic Coordinates Reverse (-)

18034426 .. 18035198

Gene Structure 773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG171900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGAGAAACTTAGCCATGGCTACGAGTCTAGTATGGATGGAAATCACGCCTTACACATCATTCCGGATTCTAGGCAGGTAAAGGCAGATGAGTTGCGGTCTGGAGTATGCTATTTTCAGATAACTGCTGTTGATCCAGTCATGGAAGATGAAGATTTGGGAAGCAGAAGGAAGAGAATCTTTTCTCTTTCGACAGGAAGTGTTCGTGTGCGGGTCTTTGACCGCTTTTTGTTTGATACACCTTTTACGAAAAATGGAAAAACTCAAGGTGGATTGGAAGACCAGTGGAAGAGGCGGACTGTTCTTCAGACTGAAGGTTCATTCCCAGCTCTTGTTAACAGGCTTGTAGTTACTATATCCGAATCGCTTGAGTTCTCCCCTGTAGAAAATGCCATTGGAATGATTGAAACTTGGACGGCTGCTCTACGTAATGAACTTGAAGAGCCTCGCAGTTCTGAGGGGGATCAACTCCCACGTCTCCAGAGCCTGCAGAGAATTCTTCAAGGAAGTATTGCAGTTCAGGTCAACAGTGGTGTTCTAAGTGTGTGCACTGCATTCCTTTCCGGTGAGCCTGCCACACGATTGCGGTCACAAGAATTGCAGCAACTCATTGCGGCTCTCCTTGATTTATGGCTGTATGCAAGCGTGCCATCCATGTACACTTCAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0006810 GO:0008064 GO:0008150 GO:0008360 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009958 GO:0009966 GO:0009987 GO:0010646 GO:0010928 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0017016 GO:0017048 GO:0019898 GO:0019899 GO:0022603 GO:0022604 GO:0023051 GO:0030832 GO:0031267 GO:0032535 GO:0032956 GO:0032970 GO:0033043 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051020 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0065007 GO:0065008 GO:0065009 GO:0070971 GO:0071840 GO:0071944 GO:0090066 GO:0098772 GO:0110053 GO:1902903

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DHR-2 DOCK-C2

Protein Analysis

223

Amino Acids

24.94

Weight (kDa)

5.21

Isoelectric Point (pI)

65.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHR-2_Lobe_B	PF20422	24 - 106	4.8e-23	DHR-2, Lobe B
DHR-2_Lobe_C	PF20421	154 - 209	8.6e-12	DHR-2, Lobe C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16340 AT4G16340
fragaria_vesca	FvH4_3g14770 FvH4_3g14770 FvH4_3g14770
malus_domestica	MD05G1229900.v1.1 MD05G1233200.v1.1 MD10G1209700.v1.1
prunus_persica	Prupe.3G108400_v2.0.a1 Prupe.4G132800_v2.0.a1
pyrus_communis	pycom05g21080 pycom05g21090 pycom10g17800 pycom10g17820
rosa_chinensis	RchiOBHm_Chr1g0327621 RchiOBHm_Chr3g0473981 RchiOBHm_Chr5g0024291 RchiOBHm_Chr5g0024301 RchiOBHm_Chr5g0024371 RchiOBHm_Chr5g0024381
rosa_laevigata	RLG00000029979 RLG00000032795 RLG00000036969
rosa_multiflora	Rmu_co8048528.1_g000001 Rmu_co8378897.1_g000002 Rmu_sc0005861.1_g000003 Rmu_sc0015218.1_g000005 Rmu_ssc0000042.1_g000009
rosa_roxburghii	Rroxscaffold_1G00054850 Rroxscaffold_1G00054890 Rroxscaffold_1G00055790 Rroxscaffold_1G00055850 Rroxscaffold_4G00322510
rosa_rugosa	Rorug01G0068800 Rorug05G0083000 Rorug05G0083100
rosa_samantha	Rh3AG187600 Rh3BG216300 Rh3CG212800 Rh5AG173700 Rh5BG170500 Rh5BG170900 Rh5BG171900 Rh5BG172000 Rh5CG186800 Rh5CG187500 Rh5CG187600 Rh5DG173100
rosa_wichuraiana	Rw0G000890 Rw3G017190 Rw5G015680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	67
AccIII	TCCGGA	1 cut(s)	64
AciI	CCGC	6 cut(s)	97, 211, 223, 295, 586, 614
AclWI	GGATC	2 cut(s)	128, 471
AcsI	RAATTY	1 cut(s)	495
AcuI	CTGAAG	3 cut(s)	290, 333, 648
AfaI	GTAC	1 cut(s)	659
AgsI	TTSAA	3 cut(s)	407, 440, 503
AjiI	CACGTC	1 cut(s)	476
AjuI	GAANNNNNNNTTGG	2 cut(s)	378, 410
AluBI	AGCT	1 cut(s)	329
AluI	AGCT	1 cut(s)	329
Alw21I	GWGCWC	1 cut(s)	551
Alw26I	GTCTC	1 cut(s)	482
Alw44I	GTGCAC	1 cut(s)	547
AlwI	GGATC	2 cut(s)	128, 471
AlwNI	CAGNNNCTG	1 cut(s)	487
Aor13HI	TCCGGA	1 cut(s)	64
ApaLI	GTGCAC	1 cut(s)	547
ApeKI	GCWGC	2 cut(s)	419, 601
ApoI	RAATTY	1 cut(s)	495
Asp700I	GAANNNNTTC	1 cut(s)	181
AsuHPI	GGTGA	1 cut(s)	578
BaeGI	GKGCMC	1 cut(s)	551
BbsI	GAAGAC	1 cut(s)	285
Bbv12I	GWGCWC	1 cut(s)	551
BbvI	GCAGC	2 cut(s)	406, 613
BccI	CCATC	2 cut(s)	32, 658
BceAI	ACGGC	1 cut(s)	432
BcoDI	GTCTC	1 cut(s)	482
BfaI	CTAG	2 cut(s)	30, 72
BfmI	CTRYAG	2 cut(s)	381, 488
BfuAI	ACCTGC	1 cut(s)	67
BisI	GCNGC	3 cut(s)	420, 602, 615
BlsI	GCNGC	3 cut(s)	421, 603, 616
BmgBI	CACGTC	1 cut(s)	476
BpiI	GAAGAC	1 cut(s)	285
BpmI	CTGGAG	2 cut(s)	123, 464
BpuEI	CTTGAG	2 cut(s)	249, 389
BsaAI	YACGTR	1 cut(s)	428
BsaBI	GATNNNNATC	1 cut(s)	42
BsaJI	CCNNGG	1 cut(s)	16
BsaWI	WCCGGW	2 cut(s)	64, 563
Bse1I	ACTGG	2 cut(s)	137, 283
Bse3DI	GCAATG	1 cut(s)	609
Bse8I	GATNNNNATC	1 cut(s)	42
BseAI	TCCGGA	1 cut(s)	64
BseDI	CCNNGG	1 cut(s)	16
BseGI	GGATG	2 cut(s)	43, 650
BseJI	GATNNNNATC	1 cut(s)	42
BseMI	GCAATG	1 cut(s)	609
BseMII	CTCAG	1 cut(s)	447
BseNI	ACTGG	2 cut(s)	137, 283
BseSI	GKGCMC	1 cut(s)	551
BseXI	GCAGC	2 cut(s)	406, 613
BseYI	CCCAGC	1 cut(s)	325
BsiHKAI	GWGCWC	1 cut(s)	551
BsiSI	CCGG	2 cut(s)	65, 564
BsmAI	GTCTC	1 cut(s)	482
BsmBI	CGTCTC	1 cut(s)	482
BsmI	GAATGC	1 cut(s)	554
Bsp1286I	GDGCHC	1 cut(s)	551
Bsp13I	TCCGGA	1 cut(s)	64
Bsp1407I	TGTACA	1 cut(s)	657
Bsp143I	GATC	2 cut(s)	133, 463
Bsp19I	CCATGG	1 cut(s)	16
BspACI	CCGC	6 cut(s)	97, 211, 223, 295, 586, 614
BspCNI	CTCAG	1 cut(s)	448
BspEI	TCCGGA	1 cut(s)	64
BspMAI	CTGCAG	1 cut(s)	492
BspMI	ACCTGC	1 cut(s)	67
BspPI	GGATC	2 cut(s)	128, 471
BspQI	GCTCTTC	1 cut(s)	435
BsrDI	GCAATG	1 cut(s)	609
BsrGI	TGTACA	1 cut(s)	657
BsrI	ACTGG	2 cut(s)	137, 283
BssECI	CCNNGG	1 cut(s)	16
BssMI	GATC	2 cut(s)	133, 463
BssT1I	CCWWGG	1 cut(s)	16
Bst4CI	ACNGT	2 cut(s)	301, 530
Bst6I	CTCTTC	3 cut(s)	167, 284, 435
BstAUI	TGTACA	1 cut(s)	657
BstBAI	YACGTR	1 cut(s)	428
BstC8I	GCNNGC	4 cut(s)	488, 573, 643, 647
BstDEI	CTNAG	3 cut(s)	11, 456, 539
BstDSI	CCRYGG	1 cut(s)	16
BstF5I	GGATG	2 cut(s)	43, 650
BstKTI	GATC	2 cut(s)	136, 466
BstMAI	GTCTC	1 cut(s)	482
BstMBI	GATC	2 cut(s)	133, 463
BstSFI	CTRYAG	2 cut(s)	381, 488
BstSLI	GKGCMC	1 cut(s)	551
BstSNI	TACGTA	1 cut(s)	428
BstV1I	GCAGC	2 cut(s)	406, 613
BstV2I	GAAGAC	1 cut(s)	285
BtgI	CCRYGG	1 cut(s)	16
BtrI	CACGTC	1 cut(s)	476
BtsCI	GGATG	2 cut(s)	43, 650
BtsI	GCAGTG	1 cut(s)	549
BtsIMutI	CAGTG	3 cut(s)	290, 535, 549
BveI	ACCTGC	1 cut(s)	67
Cac8I	GCNNGC	4 cut(s)	488, 573, 643, 647
CaiI	CAGNNNCTG	1 cut(s)	487
Csp6I	GTAC	1 cut(s)	658
CviAII	CATG	3 cut(s)	17, 142, 655
CviQI	GTAC	1 cut(s)	658
DdeI	CTNAG	3 cut(s)	11, 456, 539
DpnI	GATC	2 cut(s)	135, 465
DpnII	GATC	2 cut(s)	133, 463
Eam1104I	CTCTTC	3 cut(s)	167, 284, 435
EarI	CTCTTC	3 cut(s)	167, 284, 435
EciI	GGCGGA	1 cut(s)	310
Eco105I	TACGTA	1 cut(s)	428
Eco130I	CCWWGG	1 cut(s)	16
Eco57I	CTGAAG	3 cut(s)	290, 333, 648
EcoRI	GAATTC	1 cut(s)	495
EcoT14I	CCWWGG	1 cut(s)	16
ErhI	CCWWGG	1 cut(s)	16
Esp3I	CGTCTC	1 cut(s)	482
FaeI	CATG	3 cut(s)	20, 145, 658
FaiI	YATR	8 cut(s)	18, 35, 109, 143, 356, 631, 639, 656
FalI	AAGNNNNNCTT	2 cut(s)	164, 196
FatI	CATG	3 cut(s)	16, 141, 654
FauI	CCCGC	1 cut(s)	204
Fnu4HI	GCNGC	3 cut(s)	420, 602, 615
FokI	GGATG	2 cut(s)	50, 637
Fsp4HI	GCNGC	3 cut(s)	420, 602, 615
FspBI	CTAG	2 cut(s)	30, 72
GluI	GCNGC	3 cut(s)	420, 602, 615
GsaI	CCCAGC	1 cut(s)	329
GsuI	CTGGAG	2 cut(s)	123, 464
HapII	CCGG	2 cut(s)	65, 564
Hin1II	CATG	3 cut(s)	20, 145, 658
HincII	GTYRAC	2 cut(s)	337, 526
HindII	GTYRAC	2 cut(s)	337, 526
HinfI	GANTC	4 cut(s)	26, 68, 177, 362
HpaI	GTTAAC	1 cut(s)	337
HpaII	CCGG	2 cut(s)	65, 564
HphI	GGTGA	1 cut(s)	578
Hpy166II	GTNNAC	4 cut(s)	337, 526, 549, 660
Hpy188I	TCNGA	5 cut(s)	120, 309, 361, 457, 667
Hpy188III	TCNNGA	3 cut(s)	65, 102, 481
Hpy8I	GTNNAC	4 cut(s)	337, 526, 549, 660
HpyAV	CCTTC	2 cut(s)	162, 308
HpyCH4III	ACNGT	2 cut(s)	301, 530
HpyCH4IV	ACGT	2 cut(s)	427, 475
HpyCH4V	TGCA	6 cut(s)	490, 515, 549, 554, 601, 641
HpyF3I	CTNAG	3 cut(s)	11, 456, 539
HpySE526I	ACGT	2 cut(s)	427, 475
Hsp92II	CATG	3 cut(s)	20, 145, 658
Kpn2I	TCCGGA	1 cut(s)	64
KspAI	GTTAAC	1 cut(s)	337
Kzo9I	GATC	2 cut(s)	133, 463
LguI	GCTCTTC	1 cut(s)	435
Lsp1109I	GCAGC	2 cut(s)	406, 613
MaeI	CTAG	2 cut(s)	30, 72
MaeII	ACGT	2 cut(s)	427, 475
MaeIII	GTNAC	2 cut(s)	349, 588
MalI	GATC	2 cut(s)	135, 465
MboI	GATC	2 cut(s)	133, 463
MboII	GAAGA	8 cut(s)	158, 164, 184, 290, 296, 301, 452, 491
MhlI	GDGCHC	1 cut(s)	551
MluCI	AATT	2 cut(s)	495, 596
MlyI	GAGTC	1 cut(s)	35
MnlI	CCTC	3 cut(s)	285, 451, 456
MroI	TCCGGA	1 cut(s)	64
MroXI	GAANNNNTTC	1 cut(s)	181
MseI	TTAA	1 cut(s)	336
MslI	CAYNNNNRTG	1 cut(s)	398
MspI	CCGG	2 cut(s)	65, 564
Mva1269I	GAATGC	1 cut(s)	554
NcoI	CCATGG	1 cut(s)	16
NdeII	GATC	2 cut(s)	133, 463
NlaIII	CATG	3 cut(s)	20, 145, 658
NmuCI	GTSAC	1 cut(s)	588
PciSI	GCTCTTC	1 cut(s)	435
PctI	GAATGC	1 cut(s)	554
PdmI	GAANNNNTTC	1 cut(s)	181
PfeI	GAWTC	3 cut(s)	68, 177, 362
PkrI	GCNGC	3 cut(s)	421, 603, 616
PleI	GAGTC	1 cut(s)	34
PpsI	GAGTC	1 cut(s)	34
Ppu21I	YACGTR	1 cut(s)	428
PspFI	CCCAGC	1 cut(s)	325
PstI	CTGCAG	1 cut(s)	492
PstNI	CAGNNNCTG	1 cut(s)	487
RsaI	GTAC	1 cut(s)	659
RsaNI	GTAC	1 cut(s)	658
RseI	CAYNNNNRTG	1 cut(s)	398
SapI	GCTCTTC	1 cut(s)	435
SaqAI	TTAA	1 cut(s)	336
SatI	GCNGC	3 cut(s)	420, 602, 615
Sau3AI	GATC	2 cut(s)	133, 463
SchI	GAGTC	1 cut(s)	35
SduI	GDGCHC	1 cut(s)	551
SetI	ASST	8 cut(s)	81, 244, 271, 319, 331, 430, 478, 525
SfcI	CTRYAG	2 cut(s)	381, 488
SmiMI	CAYNNNNRTG	1 cut(s)	398
SmlI	CTYRAG	2 cut(s)	264, 368
SmoI	CTYRAG	2 cut(s)	264, 368
SnaBI	TACGTA	1 cut(s)	428
Sse9I	AATT	2 cut(s)	495, 596
SsiI	CCGC	6 cut(s)	97, 211, 223, 295, 586, 614
SspMI	CTAG	2 cut(s)	30, 72
StyI	CCWWGG	1 cut(s)	16
TaaI	ACNGT	2 cut(s)	301, 530
TaiI	ACGT	2 cut(s)	430, 478
TaqI	TCGA	1 cut(s)	191
TasI	AATT	2 cut(s)	495, 596
TatI	WGTACW	1 cut(s)	657
TauI	GCSGC	1 cut(s)	617
TfiI	GAWTC	3 cut(s)	68, 177, 362
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TscAI	CASTG	3 cut(s)	290, 535, 556
TseFI	GTSAC	1 cut(s)	588
TseI	GCWGC	2 cut(s)	419, 601
Tsp45I	GTSAC	1 cut(s)	588
TspDTI	ATGAA	3 cut(s)	165, 309, 447
TspRI	CASTG	3 cut(s)	290, 535, 556
VneI	GTGCAC	1 cut(s)	547
XapI	RAATTY	1 cut(s)	495
XmnI	GAANNNNTTC	1 cut(s)	181
XspI	CTAG	2 cut(s)	30, 72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.