Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001516

Physical Location & Seq

Genomic Coordinates Forward (+)

18546610 .. 18547289

Gene Structure 680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30413

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGATTGAAACTCGGACGGCTGCTCTACGTAATGAACTTGAAGAGCCTCGCAGTTCTGAGGGGGATCAACTCCCACCTCTCCAGAGCCTGCAGAGAATTCTTCAAGGAAGTATTGCAGTTCAGGTCAACAGTGGTGTTCTAAGTGTGTGCACTGCATTCCTTTCCGGTGAGCCTGCCACACGGTTGCGGTCACAAGAATTGCAGCAACTCATTGCGGCTCTCCTTGAATTTATGGCTGTATGCAAGCGTGCCATCCATGTACACTTCAGATTGATTGGTGAGGAAGACCAAGAATTCCACACACAGCTTGTGAATGGATTTCAATCTCTAACTGCTGAGTTATCTCATTATATCCCTGCCATCCTGTCCCAGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0006810 GO:0008064 GO:0008150 GO:0008360 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009958 GO:0009966 GO:0009987 GO:0010646 GO:0010928 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0017016 GO:0017048 GO:0019898 GO:0019899 GO:0022603 GO:0022604 GO:0023051 GO:0030832 GO:0031267 GO:0032535 GO:0032956 GO:0032970 GO:0033043 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051020 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0065007 GO:0065008 GO:0065009 GO:0070971 GO:0071840 GO:0071944 GO:0090066 GO:0098772 GO:0110053 GO:1902903

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DHR-2 DOCK-C2

Protein Analysis

125

Amino Acids

13.89

Weight (kDa)

5.28

Isoelectric Point (pI)

76.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHR-2_Lobe_C	PF20421	21 - 117	1.2e-27	DHR-2, Lobe C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16340 AT4G16340
fragaria_vesca	FvH4_3g14770 FvH4_3g14770 FvH4_3g14770
malus_domestica	MD05G1229900.v1.1 MD05G1233200.v1.1 MD10G1209700.v1.1
prunus_persica	Prupe.3G108400_v2.0.a1 Prupe.4G132800_v2.0.a1
pyrus_communis	pycom05g21080 pycom05g21090 pycom10g17800 pycom10g17820
rosa_chinensis	RchiOBHm_Chr1g0327621 RchiOBHm_Chr3g0473981 RchiOBHm_Chr5g0024291 RchiOBHm_Chr5g0024301 RchiOBHm_Chr5g0024371 RchiOBHm_Chr5g0024381
rosa_laevigata	RLG00000029979 RLG00000032795 RLG00000036969
rosa_multiflora	Rmu_co8048528.1_g000001 Rmu_co8378897.1_g000002 Rmu_sc0005861.1_g000003 Rmu_sc0015218.1_g000005 Rmu_ssc0000042.1_g000009
rosa_roxburghii	Rroxscaffold_1G00054850 Rroxscaffold_1G00054890 Rroxscaffold_1G00055790 Rroxscaffold_1G00055850 Rroxscaffold_4G00322510
rosa_rugosa	Rorug01G0068800 Rorug05G0083000 Rorug05G0083100
rosa_samantha	Rh3AG187600 Rh3BG216300 Rh3CG212800 Rh5AG173700 Rh5BG170500 Rh5BG170900 Rh5BG171900 Rh5BG172000 Rh5CG186800 Rh5CG187500 Rh5CG187600 Rh5DG173100
rosa_wichuraiana	Rw0G000890 Rw3G017190 Rw5G015680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	187, 215
AclWI	GGATC	1 cut(s)	72
AcsI	RAATTY	3 cut(s)	96, 227, 293
AcuI	CTGAAG	1 cut(s)	250
AfaI	GTAC	1 cut(s)	261
AgsI	TTSAA	5 cut(s)	8, 41, 104, 227, 323
AluBI	AGCT	2 cut(s)	307, 373
AluI	AGCT	2 cut(s)	307, 373
Alw21I	GWGCWC	1 cut(s)	152
Alw44I	GTGCAC	1 cut(s)	148
AlwI	GGATC	1 cut(s)	72
AlwNI	CAGNNNCTG	1 cut(s)	88
ApaLI	GTGCAC	1 cut(s)	148
ApeKI	GCWGC	2 cut(s)	20, 202
ApoI	RAATTY	3 cut(s)	96, 227, 293
AsuHPI	GGTGA	2 cut(s)	179, 290
BaeGI	GKGCMC	1 cut(s)	152
BbsI	GAAGAC	1 cut(s)	291
Bbv12I	GWGCWC	1 cut(s)	152
BbvI	GCAGC	2 cut(s)	7, 214
BccI	CCATC	2 cut(s)	260, 368
BceAI	ACGGC	1 cut(s)	33
BfmI	CTRYAG	1 cut(s)	89
BisI	GCNGC	3 cut(s)	21, 203, 216
BlsI	GCNGC	3 cut(s)	22, 204, 217
BpiI	GAAGAC	1 cut(s)	291
BpmI	CTGGAG	1 cut(s)	65
BsaAI	YACGTR	1 cut(s)	29
BsaBI	GATNNNNATC	1 cut(s)	322
BsaWI	WCCGGW	1 cut(s)	164
Bse3DI	GCAATG	1 cut(s)	210
Bse8I	GATNNNNATC	1 cut(s)	322
BseGI	GGATG	2 cut(s)	252, 360
BseJI	GATNNNNATC	1 cut(s)	322
BseMI	GCAATG	1 cut(s)	210
BseMII	CTCAG	2 cut(s)	48, 327
BseSI	GKGCMC	1 cut(s)	152
BseXI	GCAGC	2 cut(s)	7, 214
BseYI	CCCAGC	1 cut(s)	369
BsiHKAI	GWGCWC	1 cut(s)	152
BsiSI	CCGG	1 cut(s)	165
BslFI	GGGAC	1 cut(s)	352
BsmFI	GGGAC	1 cut(s)	352
BsmI	GAATGC	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	152
Bsp1407I	TGTACA	1 cut(s)	259
Bsp143I	GATC	1 cut(s)	64
BspACI	CCGC	2 cut(s)	187, 215
BspCNI	CTCAG	2 cut(s)	49, 328
BspMAI	CTGCAG	1 cut(s)	93
BspPI	GGATC	1 cut(s)	72
BspQI	GCTCTTC	1 cut(s)	36
BsrDI	GCAATG	1 cut(s)	210
BsrGI	TGTACA	1 cut(s)	259
BssMI	GATC	1 cut(s)	64
Bst4CI	ACNGT	2 cut(s)	131, 183
Bst6I	CTCTTC	1 cut(s)	36
BstAUI	TGTACA	1 cut(s)	259
BstBAI	YACGTR	1 cut(s)	29
BstC8I	GCNNGC	4 cut(s)	89, 174, 245, 249
BstDEI	CTNAG	3 cut(s)	57, 140, 336
BstF5I	GGATG	2 cut(s)	252, 360
BstKTI	GATC	1 cut(s)	67
BstMBI	GATC	1 cut(s)	64
BstSFI	CTRYAG	1 cut(s)	89
BstSLI	GKGCMC	1 cut(s)	152
BstSNI	TACGTA	1 cut(s)	29
BstV1I	GCAGC	2 cut(s)	7, 214
BstV2I	GAAGAC	1 cut(s)	291
BtsCI	GGATG	2 cut(s)	252, 360
BtsI	GCAGTG	1 cut(s)	150
BtsIMutI	CAGTG	2 cut(s)	136, 150
Cac8I	GCNNGC	4 cut(s)	89, 174, 245, 249
CaiI	CAGNNNCTG	1 cut(s)	88
Csp6I	GTAC	1 cut(s)	260
CviAII	CATG	1 cut(s)	257
CviJI	RGCY	8 cut(s)	20, 46, 87, 172, 218, 236, 307, 373
CviKI_1	RGCY	8 cut(s)	20, 46, 87, 172, 218, 236, 307, 373
CviQI	GTAC	1 cut(s)	260
DdeI	CTNAG	3 cut(s)	57, 140, 336
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
Eco105I	TACGTA	1 cut(s)	29
Eco57I	CTGAAG	1 cut(s)	250
EcoRI	GAATTC	2 cut(s)	96, 293
FaeI	CATG	1 cut(s)	260
FaiI	YATR	4 cut(s)	233, 241, 258, 351
FaqI	GGGAC	1 cut(s)	352
FatI	CATG	1 cut(s)	256
Fnu4HI	GCNGC	3 cut(s)	21, 203, 216
FokI	GGATG	2 cut(s)	239, 347
Fsp4HI	GCNGC	3 cut(s)	21, 203, 216
GluI	GCNGC	3 cut(s)	21, 203, 216
GsaI	CCCAGC	1 cut(s)	373
GsuI	CTGGAG	1 cut(s)	65
HapII	CCGG	1 cut(s)	165
Hin1II	CATG	1 cut(s)	260
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HpaII	CCGG	1 cut(s)	165
HphI	GGTGA	2 cut(s)	179, 290
Hpy166II	GTNNAC	3 cut(s)	127, 150, 262
Hpy188I	TCNGA	3 cut(s)	15, 58, 269
Hpy188III	TCNNGA	1 cut(s)	82
Hpy8I	GTNNAC	3 cut(s)	127, 150, 262
HpyCH4III	ACNGT	2 cut(s)	131, 183
HpyCH4IV	ACGT	1 cut(s)	28
HpyCH4V	TGCA	6 cut(s)	91, 116, 150, 155, 202, 243
HpyF3I	CTNAG	3 cut(s)	57, 140, 336
HpySE526I	ACGT	1 cut(s)	28
Hsp92II	CATG	1 cut(s)	260
Kzo9I	GATC	1 cut(s)	64
LguI	GCTCTTC	1 cut(s)	36
LpnPI	CCDG	6 cut(s)	95, 101, 107, 178, 186, 369
Lsp1109I	GCAGC	2 cut(s)	7, 214
MaeII	ACGT	1 cut(s)	28
MaeIII	GTNAC	1 cut(s)	189
MalI	GATC	1 cut(s)	66
MboI	GATC	1 cut(s)	64
MboII	GAAGA	3 cut(s)	53, 92, 296
MhlI	GDGCHC	1 cut(s)	152
MluCI	AATT	4 cut(s)	96, 197, 227, 293
MnlI	CCTC	4 cut(s)	52, 57, 87, 274
MspA1I	CMGCKG	1 cut(s)	373
MspI	CCGG	1 cut(s)	165
Mva1269I	GAATGC	1 cut(s)	155
NdeII	GATC	1 cut(s)	64
NlaIII	CATG	1 cut(s)	260
NmuCI	GTSAC	1 cut(s)	189
PciSI	GCTCTTC	1 cut(s)	36
PctI	GAATGC	1 cut(s)	155
PkrI	GCNGC	3 cut(s)	22, 204, 217
Ppu21I	YACGTR	1 cut(s)	29
PspFI	CCCAGC	1 cut(s)	369
PstI	CTGCAG	1 cut(s)	93
PstNI	CAGNNNCTG	1 cut(s)	88
PvuII	CAGCTG	1 cut(s)	373
RsaI	GTAC	1 cut(s)	261
RsaNI	GTAC	1 cut(s)	260
SapI	GCTCTTC	1 cut(s)	36
SatI	GCNGC	3 cut(s)	21, 203, 216
Sau3AI	GATC	1 cut(s)	64
SduI	GDGCHC	1 cut(s)	152
SetI	ASST	5 cut(s)	31, 79, 126, 309, 375
SfcI	CTRYAG	1 cut(s)	89
SnaBI	TACGTA	1 cut(s)	29
Sse9I	AATT	4 cut(s)	96, 197, 227, 293
SsiI	CCGC	2 cut(s)	187, 215
TaaI	ACNGT	2 cut(s)	131, 183
TaiI	ACGT	1 cut(s)	31
TasI	AATT	4 cut(s)	96, 197, 227, 293
TatI	WGTACW	1 cut(s)	259
TauI	GCSGC	1 cut(s)	218
TscAI	CASTG	2 cut(s)	136, 157
TseFI	GTSAC	1 cut(s)	189
TseI	GCWGC	2 cut(s)	20, 202
Tsp45I	GTSAC	1 cut(s)	189
TspDTI	ATGAA	1 cut(s)	48
TspRI	CASTG	2 cut(s)	136, 157
VneI	GTGCAC	1 cut(s)	148
XapI	RAATTY	3 cut(s)	96, 227, 293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.