RchiOBHm_Chr3g0473981

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0001516
Physical Location & Seq
Forward (+)
19725551 .. 19728777
3227 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43963

Sequence Viewer

Length: 306 bp
ATGCGGTCAAATGGTTCCAGAAACTCCAATATCTCACGGCCTGAAGATCTCAGTGAAAGTTCTGTCCCTATCATTTCAAGCGGGACTAGTTGCCATTTTATGGTACAATTTGCTTATATAATAGGGAGAGAAGAGAAAAGTTGTCAGAGGATTTCTATTTTCGTCATGCACCAACTGAAACACAGTGTAAGAATTTTATATATTTTTGGCACCACTTTAATGGTCATCCTTTGTTCTTTAAGTAAATTTCTAGCACACATCATGACTGACAAATTTACTACTGCTCCGTGTGAACTCTTTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

11.52

Weight (kDa)

8.84

Isoelectric Point (pI)

57.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 209
AccB7I CCANNNNNTGG 1 cut(s) 100
AciI CCGC 2 cut(s) 4, 81
AcsI RAATTY 3 cut(s) 192, 245, 272
AcuI CTGAAG 1 cut(s) 63
AfaI GTAC 1 cut(s) 105
AfiI CCNNNNNNNGG 1 cut(s) 100
AgsI TTSAA 1 cut(s) 78
AhlI ACTAGT 1 cut(s) 86
AoxI GGCC 1 cut(s) 38
ApoI RAATTY 3 cut(s) 192, 245, 272
BanI GGYRCC 1 cut(s) 209
BceAI ACGGC 1 cut(s) 53
BcuI ACTAGT 1 cut(s) 86
BfaI CTAG 2 cut(s) 87, 251
BglII AGATCT 1 cut(s) 46
BmiI GGNNCC 2 cut(s) 16, 211
BsaXI ACNNNNNCTCC 2 cut(s) 268, 298
Bsc4I CCNNNNNNNGG 1 cut(s) 100
BseGI GGATG 1 cut(s) 225
BseLI CCNNNNNNNGG 1 cut(s) 100
BseMII CTCAG 1 cut(s) 64
BshFI GGCC 1 cut(s) 40
BshNI GGYRCC 1 cut(s) 209
BslFI GGGAC 2 cut(s) 50, 97
BslI CCNNNNNNNGG 1 cut(s) 100
BsmFI GGGAC 2 cut(s) 50, 97
BsnI GGCC 1 cut(s) 40
Bsp143I GATC 1 cut(s) 46
BspACI CCGC 2 cut(s) 4, 81
BspANI GGCC 1 cut(s) 40
BspCNI CTCAG 1 cut(s) 63
BspHI TCATGA 1 cut(s) 261
BspLI GGNNCC 2 cut(s) 16, 211
BspT107I GGYRCC 1 cut(s) 209
BssMI GATC 1 cut(s) 46
Bst4CI ACNGT 1 cut(s) 185
Bst6I CTCTTC 1 cut(s) 126
BstDEI CTNAG 1 cut(s) 50
BstF5I GGATG 1 cut(s) 225
BstKTI GATC 1 cut(s) 49
BstMBI GATC 1 cut(s) 46
BstX2I RGATCY 1 cut(s) 46
BstXI CCANNNNNNTGG 1 cut(s) 220
BstYI RGATCY 1 cut(s) 46
BsuRI GGCC 1 cut(s) 40
BtsCI GGATG 1 cut(s) 225
BtsIMutI CAGTG 2 cut(s) 58, 190
CciI TCATGA 1 cut(s) 261
Csp6I GTAC 1 cut(s) 104
CviAII CATG 2 cut(s) 166, 262
CviJI RGCY 1 cut(s) 40
CviKI_1 RGCY 1 cut(s) 40
CviQI GTAC 1 cut(s) 104
DdeI CTNAG 1 cut(s) 50
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
Eam1104I CTCTTC 1 cut(s) 126
EarI CTCTTC 1 cut(s) 126
Eco57I CTGAAG 1 cut(s) 63
FaeI CATG 2 cut(s) 169, 265
FaiI YATR 7 cut(s) 101, 117, 119, 167, 199, 201, 263
FaqI GGGAC 2 cut(s) 50, 97
FatI CATG 2 cut(s) 165, 261
FauI CCCGC 1 cut(s) 74
FokI GGATG 1 cut(s) 212
FspBI CTAG 2 cut(s) 87, 251
HaeIII GGCC 1 cut(s) 40
Hin1II CATG 2 cut(s) 169, 265
Hpy166II GTNNAC 1 cut(s) 293
Hpy188I TCNGA 1 cut(s) 147
Hpy188III TCNNGA 2 cut(s) 18, 262
Hpy8I GTNNAC 1 cut(s) 293
HpyCH4III ACNGT 1 cut(s) 185
HpyCH4V TGCA 1 cut(s) 169
HpyF3I CTNAG 1 cut(s) 50
Hsp92II CATG 2 cut(s) 169, 265
Kzo9I GATC 1 cut(s) 46
LmnI GCTCC 1 cut(s) 289
LpnPI CCDG 2 cut(s) 31, 54
MaeI CTAG 2 cut(s) 87, 251
MalI GATC 1 cut(s) 48
MboI GATC 1 cut(s) 46
MboII GAAGA 2 cut(s) 56, 143
MflI RGATCY 1 cut(s) 46
MluCI AATT 4 cut(s) 107, 192, 245, 272
MnlI CCTC 1 cut(s) 141
MseI TTAA 2 cut(s) 218, 239
MslI CAYNNNNRTG 1 cut(s) 218
NdeII GATC 1 cut(s) 46
NlaIII CATG 2 cut(s) 169, 265
NlaIV GGNNCC 2 cut(s) 16, 211
PagI TCATGA 1 cut(s) 261
PflMI CCANNNNNTGG 1 cut(s) 100
PspN4I GGNNCC 2 cut(s) 16, 211
PsuI RGATCY 1 cut(s) 46
RsaI GTAC 1 cut(s) 105
RsaNI GTAC 1 cut(s) 104
RseI CAYNNNNRTG 1 cut(s) 218
SaqAI TTAA 2 cut(s) 218, 239
Sau3AI GATC 1 cut(s) 46
SmiMI CAYNNNNRTG 1 cut(s) 218
SpeI ACTAGT 1 cut(s) 86
Sse9I AATT 4 cut(s) 107, 192, 245, 272
SsiI CCGC 2 cut(s) 4, 81
SspMI CTAG 2 cut(s) 87, 251
TaaI ACNGT 1 cut(s) 185
TasI AATT 4 cut(s) 107, 192, 245, 272
Tru1I TTAA 2 cut(s) 218, 239
Tru9I TTAA 2 cut(s) 218, 239
TscAI CASTG 2 cut(s) 58, 190
TspGWI ACGGA 1 cut(s) 276
TspRI CASTG 2 cut(s) 58, 190
Van91I CCANNNNNTGG 1 cut(s) 100
XapI RAATTY 3 cut(s) 192, 245, 272
XspI CTAG 2 cut(s) 87, 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.