Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8378897.1

Orthogroup ID

OG0001516

Physical Location & Seq

Genomic Coordinates Reverse (-)

498 .. 975

Gene Structure 478 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8378897.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

atgattgaaactcggacggctgctctacgtaatgaacttgaagagcctcgcagttctgagggggatcaactcccacgtctccagagcctacagagaattcttcaaggaagtgttgcagttcaggtcaacagtggtgttctaagtgtgtgcactgcattcctttccggtgaaccagcgacaaggttgcggtcacaagaattgcagcaactcattgcagcgctccttgaatttatggctgtatgcaagcgtgccatccgtgtacacttcagattgattggcgaggaagaccaagaattccacacacagcttgtgaatggatttcaatctctaactgctgagttatctcattatatccctgccatcctgtccgagctgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0006810 GO:0008064 GO:0008150 GO:0008360 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009958 GO:0009966 GO:0009987 GO:0010646 GO:0010928 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0017016 GO:0017048 GO:0019898 GO:0019899 GO:0022603 GO:0022604 GO:0023051 GO:0030832 GO:0031267 GO:0032535 GO:0032956 GO:0032970 GO:0033043 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051020 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0065007 GO:0065008 GO:0065009 GO:0070971 GO:0071840 GO:0071944 GO:0090066 GO:0098772 GO:0110053 GO:1902903

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DHR-2 DOCK-C2

Protein Analysis

125

Amino Acids

13.96

Weight (kDa)

5.34

Isoelectric Point (pI)

73.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16340 AT4G16340
fragaria_vesca	FvH4_3g14770 FvH4_3g14770 FvH4_3g14770
malus_domestica	MD05G1229900.v1.1 MD05G1233200.v1.1 MD10G1209700.v1.1
prunus_persica	Prupe.3G108400_v2.0.a1 Prupe.4G132800_v2.0.a1
pyrus_communis	pycom05g21080 pycom05g21090 pycom10g17800 pycom10g17820
rosa_chinensis	RchiOBHm_Chr1g0327621 RchiOBHm_Chr3g0473981 RchiOBHm_Chr5g0024291 RchiOBHm_Chr5g0024301 RchiOBHm_Chr5g0024371 RchiOBHm_Chr5g0024381
rosa_laevigata	RLG00000029979 RLG00000032795 RLG00000036969
rosa_multiflora	Rmu_co8048528.1_g000001 Rmu_co8378897.1_g000002 Rmu_sc0005861.1_g000003 Rmu_sc0015218.1_g000005 Rmu_ssc0000042.1_g000009
rosa_roxburghii	Rroxscaffold_1G00054850 Rroxscaffold_1G00054890 Rroxscaffold_1G00055790 Rroxscaffold_1G00055850 Rroxscaffold_4G00322510
rosa_rugosa	Rorug01G0068800 Rorug05G0083000 Rorug05G0083100
rosa_samantha	Rh3AG187600 Rh3BG216300 Rh3CG212800 Rh5AG173700 Rh5BG170500 Rh5BG170900 Rh5BG171900 Rh5BG172000 Rh5CG186800 Rh5CG187500 Rh5CG187600 Rh5DG173100
rosa_wichuraiana	Rw0G000890 Rw3G017190 Rw5G015680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	187
AclWI	GGATC	1 cut(s)	72
AcsI	RAATTY	3 cut(s)	96, 227, 293
AcuI	CTGAAG	1 cut(s)	250
AfaI	GTAC	1 cut(s)	261
AfeI	AGCGCT	1 cut(s)	219
AgsI	TTSAA	5 cut(s)	8, 41, 104, 227, 323
AjiI	CACGTC	1 cut(s)	77
AluBI	AGCT	2 cut(s)	307, 373
AluI	AGCT	2 cut(s)	307, 373
Alw21I	GWGCWC	1 cut(s)	152
Alw26I	GTCTC	1 cut(s)	83
Alw44I	GTGCAC	1 cut(s)	148
AlwI	GGATC	1 cut(s)	72
Aor51HI	AGCGCT	1 cut(s)	219
ApaLI	GTGCAC	1 cut(s)	148
ApeKI	GCWGC	3 cut(s)	20, 202, 215
ApoI	RAATTY	3 cut(s)	96, 227, 293
AspLEI	GCGC	1 cut(s)	220
AsuHPI	GGTGA	1 cut(s)	179
BaeGI	GKGCMC	1 cut(s)	152
BbsI	GAAGAC	1 cut(s)	291
Bbv12I	GWGCWC	1 cut(s)	152
BbvI	GCAGC	3 cut(s)	7, 214, 227
BccI	CCATC	2 cut(s)	260, 368
BceAI	ACGGC	1 cut(s)	33
BcgI	CGANNNNNNTGC	2 cut(s)	166, 200
BcoDI	GTCTC	1 cut(s)	83
BfmI	CTRYAG	1 cut(s)	89
BfoI	RGCGCY	1 cut(s)	221
BisI	GCNGC	3 cut(s)	21, 203, 216
BlsI	GCNGC	3 cut(s)	22, 204, 217
BmgBI	CACGTC	1 cut(s)	77
BpiI	GAAGAC	1 cut(s)	291
BpmI	CTGGAG	1 cut(s)	65
BsaAI	YACGTR	1 cut(s)	29
BsaBI	GATNNNNATC	1 cut(s)	322
BsaWI	WCCGGW	1 cut(s)	164
Bse3DI	GCAATG	1 cut(s)	210
Bse8I	GATNNNNATC	1 cut(s)	322
BseGI	GGATG	2 cut(s)	252, 360
BseJI	GATNNNNATC	1 cut(s)	322
BseMI	GCAATG	1 cut(s)	210
BseMII	CTCAG	2 cut(s)	48, 327
BseSI	GKGCMC	1 cut(s)	152
BseXI	GCAGC	3 cut(s)	7, 214, 227
BsiHKAI	GWGCWC	1 cut(s)	152
BsiSI	CCGG	1 cut(s)	165
BsmAI	GTCTC	1 cut(s)	83
BsmBI	CGTCTC	1 cut(s)	83
BsmI	GAATGC	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	152
Bsp1407I	TGTACA	1 cut(s)	259
Bsp143I	GATC	1 cut(s)	64
BspACI	CCGC	1 cut(s)	187
BspCNI	CTCAG	2 cut(s)	49, 328
BspPI	GGATC	1 cut(s)	72
BspQI	GCTCTTC	1 cut(s)	36
BsrDI	GCAATG	1 cut(s)	210
BsrGI	TGTACA	1 cut(s)	259
BssMI	GATC	1 cut(s)	64
Bst4CI	ACNGT	1 cut(s)	131
Bst6I	CTCTTC	1 cut(s)	36
BstAUI	TGTACA	1 cut(s)	259
BstBAI	YACGTR	1 cut(s)	29
BstC8I	GCNNGC	2 cut(s)	245, 249
BstDEI	CTNAG	3 cut(s)	57, 140, 336
BstF5I	GGATG	2 cut(s)	252, 360
BstH2I	RGCGCY	1 cut(s)	221
BstHHI	GCGC	1 cut(s)	220
BstKTI	GATC	1 cut(s)	67
BstMAI	GTCTC	1 cut(s)	83
BstMBI	GATC	1 cut(s)	64
BstSFI	CTRYAG	1 cut(s)	89
BstSLI	GKGCMC	1 cut(s)	152
BstSNI	TACGTA	1 cut(s)	29
BstV1I	GCAGC	3 cut(s)	7, 214, 227
BstV2I	GAAGAC	1 cut(s)	291
BtrI	CACGTC	1 cut(s)	77
BtsCI	GGATG	2 cut(s)	252, 360
BtsI	GCAGTG	1 cut(s)	150
BtsIMutI	CAGTG	2 cut(s)	136, 150
Cac8I	GCNNGC	2 cut(s)	245, 249
CfoI	GCGC	1 cut(s)	220
Csp6I	GTAC	1 cut(s)	260
CviJI	RGCY	6 cut(s)	20, 46, 87, 236, 307, 373
CviKI_1	RGCY	6 cut(s)	20, 46, 87, 236, 307, 373
CviQI	GTAC	1 cut(s)	260
DdeI	CTNAG	3 cut(s)	57, 140, 336
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
Eco105I	TACGTA	1 cut(s)	29
Eco47III	AGCGCT	1 cut(s)	219
Eco57I	CTGAAG	1 cut(s)	250
EcoRI	GAATTC	2 cut(s)	96, 293
Esp3I	CGTCTC	1 cut(s)	83
FaiI	YATR	3 cut(s)	233, 241, 351
Fnu4HI	GCNGC	3 cut(s)	21, 203, 216
FokI	GGATG	2 cut(s)	239, 347
Fsp4HI	GCNGC	3 cut(s)	21, 203, 216
GlaI	GCGC	1 cut(s)	219
GluI	GCNGC	3 cut(s)	21, 203, 216
GsuI	CTGGAG	1 cut(s)	65
HaeII	RGCGCY	1 cut(s)	221
HapII	CCGG	1 cut(s)	165
HhaI	GCGC	1 cut(s)	220
Hin6I	GCGC	1 cut(s)	218
HinP1I	GCGC	1 cut(s)	218
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HpaII	CCGG	1 cut(s)	165
HphI	GGTGA	1 cut(s)	179
Hpy166II	GTNNAC	5 cut(s)	127, 150, 170, 260, 262
Hpy188I	TCNGA	4 cut(s)	15, 58, 269, 370
Hpy188III	TCNNGA	1 cut(s)	82
Hpy8I	GTNNAC	5 cut(s)	127, 150, 170, 260, 262
HpyCH4III	ACNGT	1 cut(s)	131
HpyCH4IV	ACGT	2 cut(s)	28, 76
HpyCH4V	TGCA	6 cut(s)	116, 150, 155, 202, 215, 243
HpyF3I	CTNAG	3 cut(s)	57, 140, 336
HpySE526I	ACGT	2 cut(s)	28, 76
HspAI	GCGC	1 cut(s)	218
Kzo9I	GATC	1 cut(s)	64
LguI	GCTCTTC	1 cut(s)	36
LmnI	GCTCC	1 cut(s)	225
LpnPI	CCDG	5 cut(s)	95, 107, 178, 186, 369
Lsp1109I	GCAGC	3 cut(s)	7, 214, 227
MaeII	ACGT	2 cut(s)	28, 76
MaeIII	GTNAC	1 cut(s)	189
MalI	GATC	1 cut(s)	66
MboI	GATC	1 cut(s)	64
MboII	GAAGA	3 cut(s)	53, 92, 296
MhlI	GDGCHC	1 cut(s)	152
MluCI	AATT	4 cut(s)	96, 197, 227, 293
MnlI	CCTC	3 cut(s)	52, 57, 274
MspI	CCGG	1 cut(s)	165
Mva1269I	GAATGC	1 cut(s)	155
NdeII	GATC	1 cut(s)	64
NmuCI	GTSAC	1 cut(s)	189
PciSI	GCTCTTC	1 cut(s)	36
PctI	GAATGC	1 cut(s)	155
PkrI	GCNGC	3 cut(s)	22, 204, 217
Ppu21I	YACGTR	1 cut(s)	29
RsaI	GTAC	1 cut(s)	261
RsaNI	GTAC	1 cut(s)	260
SapI	GCTCTTC	1 cut(s)	36
SatI	GCNGC	3 cut(s)	21, 203, 216
Sau3AI	GATC	1 cut(s)	64
SduI	GDGCHC	1 cut(s)	152
SetI	ASST	6 cut(s)	31, 79, 126, 185, 309, 375
SfcI	CTRYAG	1 cut(s)	89
SnaBI	TACGTA	1 cut(s)	29
Sse9I	AATT	4 cut(s)	96, 197, 227, 293
SsiI	CCGC	1 cut(s)	187
TaaI	ACNGT	1 cut(s)	131
TaiI	ACGT	2 cut(s)	31, 79
TasI	AATT	4 cut(s)	96, 197, 227, 293
TatI	WGTACW	1 cut(s)	259
TscAI	CASTG	2 cut(s)	136, 157
TseFI	GTSAC	1 cut(s)	189
TseI	GCWGC	3 cut(s)	20, 202, 215
Tsp45I	GTSAC	1 cut(s)	189
TspDTI	ATGAA	1 cut(s)	48
TspGWI	ACGGA	1 cut(s)	245
TspRI	CASTG	2 cut(s)	136, 157
VneI	GTGCAC	1 cut(s)	148
XapI	RAATTY	3 cut(s)	96, 227, 293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.