Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0001516

Physical Location & Seq

Genomic Coordinates Forward (+)

17980296 .. 17983451

Gene Structure 3156 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG187600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGAAGAAGAACATAGTTTTCAATCGATTCGGACCTCCATGGCCGTCAGAGGCGTTGATTTCAAGTGAATTGCACACTGCCGGTGCAAGGCAAACAAAGGCAGACGATACCACTGATGATGATTTACCAAGTACCTTGGAGCGCCAATTTATAGATGCAGTAGCCTCTGATTCAGCACACTCCAATGATCCAAAGCATTTTGGTCAATCTCCTCTAGCTGCTTATCAACCAGCTTTTGATTGGGAAAGTGAAAGATCATTGATATGCGGTCAAATGGTTCCAGAAACTCCAATATCTCACGGCCTGAAGATCTCAGTGAAAGTTCTGTCCCTATCATTTCAAGCGGGACTAGTTGCCATTTTATGGTACAATTTGCTTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0006810 GO:0008064 GO:0008150 GO:0008360 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009958 GO:0009966 GO:0009987 GO:0010646 GO:0010928 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0017016 GO:0017048 GO:0019898 GO:0019899 GO:0022603 GO:0022604 GO:0023051 GO:0030832 GO:0031267 GO:0032535 GO:0032956 GO:0032970 GO:0033043 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051020 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0065007 GO:0065008 GO:0065009 GO:0070971 GO:0071840 GO:0071944 GO:0090066 GO:0098772 GO:0110053 GO:1902903

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DHR-2 DOCK-C2

Protein Analysis

127

Amino Acids

14.0

Weight (kDa)

5.19

Isoelectric Point (pI)

43.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16340 AT4G16340
fragaria_vesca	FvH4_3g14770 FvH4_3g14770 FvH4_3g14770
malus_domestica	MD05G1229900.v1.1 MD05G1233200.v1.1 MD10G1209700.v1.1
prunus_persica	Prupe.3G108400_v2.0.a1 Prupe.4G132800_v2.0.a1
pyrus_communis	pycom05g21080 pycom05g21090 pycom10g17800 pycom10g17820
rosa_chinensis	RchiOBHm_Chr1g0327621 RchiOBHm_Chr3g0473981 RchiOBHm_Chr5g0024291 RchiOBHm_Chr5g0024301 RchiOBHm_Chr5g0024371 RchiOBHm_Chr5g0024381
rosa_laevigata	RLG00000029979 RLG00000032795 RLG00000036969
rosa_multiflora	Rmu_co8048528.1_g000001 Rmu_co8378897.1_g000002 Rmu_sc0005861.1_g000003 Rmu_sc0015218.1_g000005 Rmu_ssc0000042.1_g000009
rosa_roxburghii	Rroxscaffold_1G00054850 Rroxscaffold_1G00054890 Rroxscaffold_1G00055790 Rroxscaffold_1G00055850 Rroxscaffold_4G00322510
rosa_rugosa	Rorug01G0068800 Rorug05G0083000 Rorug05G0083100
rosa_samantha	Rh3AG187600 Rh3BG216300 Rh3CG212800 Rh5AG173700 Rh5BG170500 Rh5BG170900 Rh5BG171900 Rh5BG172000 Rh5CG186800 Rh5CG187500 Rh5CG187600 Rh5DG173100
rosa_wichuraiana	Rw0G000890 Rw3G017190 Rw5G015680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	363
AciI	CCGC	2 cut(s)	267, 344
AclWI	GGATC	1 cut(s)	182
AcoI	YGGCCR	1 cut(s)	41
AcuI	CTGAAG	1 cut(s)	326
AfaI	GTAC	2 cut(s)	133, 368
AfiI	CCNNNNNNNGG	2 cut(s)	87, 363
AgsI	TTSAA	3 cut(s)	22, 63, 341
AhlI	ACTAGT	1 cut(s)	349
AluBI	AGCT	2 cut(s)	218, 233
AluI	AGCT	2 cut(s)	218, 233
AlwI	GGATC	1 cut(s)	182
AoxI	GGCC	2 cut(s)	41, 301
ApeKI	GCWGC	1 cut(s)	218
AspLEI	GCGC	1 cut(s)	144
AspS9I	GGNCC	1 cut(s)	32
AvaII	GGWCC	1 cut(s)	32
BbvI	GCAGC	1 cut(s)	205
BceAI	ACGGC	2 cut(s)	28, 316
BcuI	ACTAGT	1 cut(s)	349
BfaI	CTAG	2 cut(s)	215, 350
BfoI	RGCGCY	1 cut(s)	145
BglII	AGATCT	1 cut(s)	309
BisI	GCNGC	1 cut(s)	219
BlsI	GCNGC	1 cut(s)	220
Bme18I	GGWCC	1 cut(s)	32
BmgT120I	GGNCC	1 cut(s)	32
BmiI	GGNNCC	1 cut(s)	279
BmsI	GCATC	1 cut(s)	145
Bsa29I	ATCGAT	1 cut(s)	25
BsaJI	CCNNGG	2 cut(s)	38, 135
Bsc4I	CCNNNNNNNGG	2 cut(s)	87, 363
Bse118I	RCCGGY	1 cut(s)	80
BseCI	ATCGAT	1 cut(s)	25
BseDI	CCNNGG	2 cut(s)	38, 135
BseLI	CCNNNNNNNGG	2 cut(s)	87, 363
BseMII	CTCAG	1 cut(s)	327
BseRI	GAGGAG	1 cut(s)	201
BseXI	GCAGC	1 cut(s)	205
BshFI	GGCC	2 cut(s)	43, 303
BshVI	ATCGAT	1 cut(s)	25
BsiSI	CCGG	1 cut(s)	81
BslFI	GGGAC	2 cut(s)	313, 360
BslI	CCNNNNNNNGG	2 cut(s)	87, 363
BsmFI	GGGAC	2 cut(s)	313, 360
BsnI	GGCC	2 cut(s)	43, 303
Bsp143I	GATC	3 cut(s)	187, 254, 309
Bsp19I	CCATGG	1 cut(s)	38
BspACI	CCGC	2 cut(s)	267, 344
BspANI	GGCC	2 cut(s)	43, 303
BspCNI	CTCAG	1 cut(s)	326
BspDI	ATCGAT	1 cut(s)	25
BspLI	GGNNCC	1 cut(s)	279
BspPI	GGATC	1 cut(s)	182
BsrFI	RCCGGY	1 cut(s)	80
BssAI	RCCGGY	1 cut(s)	80
BssECI	CCNNGG	2 cut(s)	38, 135
BssMI	GATC	3 cut(s)	187, 254, 309
BssT1I	CCWWGG	2 cut(s)	38, 135
BstDEI	CTNAG	1 cut(s)	313
BstDSI	CCRYGG	1 cut(s)	38
BstH2I	RGCGCY	1 cut(s)	145
BstHHI	GCGC	1 cut(s)	144
BstKTI	GATC	3 cut(s)	190, 257, 312
BstMBI	GATC	3 cut(s)	187, 254, 309
BstV1I	GCAGC	1 cut(s)	205
BstX2I	RGATCY	1 cut(s)	309
BstYI	RGATCY	1 cut(s)	309
Bsu15I	ATCGAT	1 cut(s)	25
BsuRI	GGCC	2 cut(s)	43, 303
BsuTUI	ATCGAT	1 cut(s)	25
BtgI	CCRYGG	1 cut(s)	38
BtsI	GCAGTG	1 cut(s)	75
BtsIMutI	CAGTG	3 cut(s)	75, 111, 321
CfoI	GCGC	1 cut(s)	144
Cfr10I	RCCGGY	1 cut(s)	80
Cfr13I	GGNCC	1 cut(s)	32
ClaI	ATCGAT	1 cut(s)	25
Csp6I	GTAC	2 cut(s)	132, 367
CviAII	CATG	1 cut(s)	39
CviJI	RGCY	5 cut(s)	43, 164, 218, 233, 303
CviKI_1	RGCY	5 cut(s)	43, 164, 218, 233, 303
CviQI	GTAC	2 cut(s)	132, 367
DdeI	CTNAG	1 cut(s)	313
DpnI	GATC	3 cut(s)	189, 256, 311
DpnII	GATC	3 cut(s)	187, 254, 309
EaeI	YGGCCR	1 cut(s)	41
Eco130I	CCWWGG	2 cut(s)	38, 135
Eco47I	GGWCC	1 cut(s)	32
Eco57I	CTGAAG	1 cut(s)	326
EcoT14I	CCWWGG	2 cut(s)	38, 135
ErhI	CCWWGG	2 cut(s)	38, 135
FaeI	CATG	1 cut(s)	42
FaiI	YATR	7 cut(s)	14, 40, 152, 265, 364, 380, 382
FaqI	GGGAC	2 cut(s)	313, 360
FatI	CATG	1 cut(s)	38
FauI	CCCGC	1 cut(s)	337
Fnu4HI	GCNGC	1 cut(s)	219
Fsp4HI	GCNGC	1 cut(s)	219
FspBI	CTAG	2 cut(s)	215, 350
GlaI	GCGC	1 cut(s)	143
GluI	GCNGC	1 cut(s)	219
HaeII	RGCGCY	1 cut(s)	145
HaeIII	GGCC	2 cut(s)	43, 303
HapII	CCGG	1 cut(s)	81
HhaI	GCGC	1 cut(s)	144
Hin1II	CATG	1 cut(s)	42
Hin6I	GCGC	1 cut(s)	142
HinP1I	GCGC	1 cut(s)	142
HinfI	GANTC	2 cut(s)	27, 170
HpaII	CCGG	1 cut(s)	81
Hpy188I	TCNGA	3 cut(s)	32, 49, 169
Hpy188III	TCNNGA	1 cut(s)	281
HpyCH4V	TGCA	3 cut(s)	73, 86, 158
HpyF3I	CTNAG	1 cut(s)	313
Hsp92II	CATG	1 cut(s)	42
HspAI	GCGC	1 cut(s)	142
Kzo9I	GATC	3 cut(s)	187, 254, 309
LmnI	GCTCC	1 cut(s)	139
LpnPI	CCDG	4 cut(s)	94, 243, 294, 317
Lsp1109I	GCAGC	1 cut(s)	205
LweI	GCATC	1 cut(s)	145
MaeI	CTAG	2 cut(s)	215, 350
MalI	GATC	3 cut(s)	189, 256, 311
MboI	GATC	3 cut(s)	187, 254, 309
MboII	GAAGA	3 cut(s)	16, 19, 319
MflI	RGATCY	1 cut(s)	309
MluCI	AATT	3 cut(s)	68, 146, 370
MnlI	CCTC	4 cut(s)	43, 45, 175, 222
MslI	CAYNNNNRTG	2 cut(s)	183, 262
MspI	CCGG	1 cut(s)	81
NcoI	CCATGG	1 cut(s)	38
NdeII	GATC	3 cut(s)	187, 254, 309
NlaIII	CATG	1 cut(s)	42
NlaIV	GGNNCC	1 cut(s)	279
PfeI	GAWTC	2 cut(s)	27, 170
PflMI	CCANNNNNTGG	1 cut(s)	363
PkrI	GCNGC	1 cut(s)	220
PspN4I	GGNNCC	1 cut(s)	279
PspPI	GGNCC	1 cut(s)	32
PsuI	RGATCY	1 cut(s)	309
RsaI	GTAC	2 cut(s)	133, 368
RsaNI	GTAC	2 cut(s)	132, 367
RseI	CAYNNNNRTG	2 cut(s)	183, 262
SatI	GCNGC	1 cut(s)	219
Sau3AI	GATC	3 cut(s)	187, 254, 309
Sau96I	GGNCC	1 cut(s)	32
SetI	ASST	4 cut(s)	37, 137, 220, 235
SfaNI	GCATC	1 cut(s)	145
SinI	GGWCC	1 cut(s)	32
SmiMI	CAYNNNNRTG	2 cut(s)	183, 262
SpeI	ACTAGT	1 cut(s)	349
Sse9I	AATT	3 cut(s)	68, 146, 370
SsiI	CCGC	2 cut(s)	267, 344
SspMI	CTAG	2 cut(s)	215, 350
StyI	CCWWGG	2 cut(s)	38, 135
TaqI	TCGA	1 cut(s)	25
TasI	AATT	3 cut(s)	68, 146, 370
TfiI	GAWTC	2 cut(s)	27, 170
TscAI	CASTG	3 cut(s)	82, 118, 321
TseI	GCWGC	1 cut(s)	218
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	3 cut(s)	82, 118, 321
Van91I	CCANNNNNTGG	1 cut(s)	363
VpaK11BI	GGWCC	1 cut(s)	32
XcmI	CCANNNNNNNNNTGG	1 cut(s)	237
XspI	CTAG	2 cut(s)	215, 350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.