Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001516

Physical Location & Seq

Genomic Coordinates Forward (+)

23775328 .. 23787248

Gene Structure 11921 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g21080.19

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3642 bp

ATGCTCAGCCTGCGGCCTCGCCGCGATTCCACTCCGTATACTACCAAATGGCAGAACAAGTTTGAGGAGAATTTGGAGCAGTGGCCACATCTGAAGGAGTTGGTGCAGTGCTATACAACTGACTGGGTGAAGGATGACAACAAGTATGGTCACTATGAGAGTGTTGGACCGCCCTCATTCCAGAACCAGATTTATGAGGGTCCTGACACTGACATTGAAACCGAGATGCATCTTGCAAGTGCAAGGCGAACCAAGGTGGAAGATACTACTGATGATGATGTCCCCAGTACCTCGGGAAGACAATTCACAGAGGCTACTGTATCCGATTCAGTACAGTCCAATGATCCAAAGCATTTTGGTCAATCTCCCCTTCCTGCCTATGAACCAGCATTTGATTGGGAAAACGAAAGGTCAATGATATTCGGACAAAGGATTCCAGAAACTCCAATATCTCATGGATTGAAGATCTCAGTGAAGGTTCTTTCCCTATCATTTCAAGCGGGATTAGCTGAGCCATTTTATGGTACAATGTGCTTATACAATAGGGAGAGAAGAGAAAAATTGTCAGAGGACTTTTATTTTCGTCATGCACCAACTGAAGGGCAGGATATTTCTTTTGAACCTCGCGGAATCTTCTATTTAGATGCTCCATCATCATCAGTTTGTCTGCTAATCCAGTTAGAGAAGCATGCCACAGAAGAAGGCGGGGTTACACCTTCAGTTTATTCGCGCAAAGAACCAGTACACTTGACTGAGAAAGAAAAGCAAAAACTGCAGGTGTGGTCTCAAATAATGCCTTACAGAGAGTCCTTCGCTTGGGCATTTGTTTCATTATTTGATAACAGCAATGGTGCAGCTTCTGGTGGGTCTGCTTCCCCAAGCAGTCCTCTTGCTCCTAGTATATCTGGTACAAGTTCTCATGATGGTGTGTTTGAGCCTAGTGCAAAGGTCACATTAGATGGGAAGCTATGTTATTCAAGTCGAAGCTCTGTTGTTGTCGAAATATCAAACTTAAATAAAGTTAAAGAATGCTATACTGAAGACTCACTTCAGGATCCCAAACGCAAGATTCATAAACCTGTGAAAGGTGTTTTGAGACTGGAAATTGAGAAGCACCAGAATGACACTGTTGACTTGGAAAATGTATCAGAAAGTGGTAGTGTTACCAATGATTCTATTGATGACCGCATTACCGATTCCACATTTGGGAAGCTCCCAAGTAATGGTTTCGATGGTCCTCAGGGTAGCAGCTCTAAGTGGAATTCTTCCGACACCAAAGAAATATCTGGAAATGGACCAAATGCTCATGGAAATTCAATTCCTAGTACTGATGATTTTCAAGCTTTTGACTTCCGTACGACAACAAGAAATGAGCCTTTCTTGCAGCTTTTTCATTGCCTATACGTATATCCCATGACTGTTAGTTTGAGTCGGAAGAGGAATTTGTTCATAAGGGTTGAACTGCGGGAGGATGATAATGATATTCGTAGACAGCCTTTGGAGGCAATGTATCCAAGGGAACCTGGTGCATCACTACATAAGTGGGCTCAAACACAAGTGACTGTTGGGGCTAGGATGCCCTGCTACCATGATGAGATCAAACTCTCCCTCCCTGCTACCTGGACACCAACACATCATCTTTTATTTACTTTCTTTCATGTTGATCTTCAAACAAAATTGGAAGCTCCAAAGCCTGTAGTAATTGGATACGCGGCACTTCCATTATCCACGCATGCTCAGTTGCGCTCTGAAATTTCTTTGCCAATTATGAGAGAGCTGGTTCCACATTATCTCCAGGATATGGGCAGAGAGAGGTTGGATTATTTGGAAGATGGAAAGAATATCTTTCGATTGCGCTTAAGACTATGTTCGTCGCTGTATCCTATCAATGAGCGCATAAGAGATTTTTTTCTTGAATACGATAGGCACACTCTTCGAACAAGTGCACCTTGGGGTTCTGAACTTCTGGAGGCTATTAACAGTTTGAAGAATGTTGATTCCATTGCTTTGCTTCAGTTTCTACATCCAATTTTGAATATGCTTCTCCATCTAATAGGAAATGGTGGAGAAACCCTCCAGGTTGCAGCTTTCAGAGCCATGGTTAACATCGTCACCCGGGTGCAGCAAGAGTCGGTTGATGATGCTGAGAGAAATCATTTCCTAGTTAATTACGTTGATTACGCTTTTGATGACTTTGGGGGTCGTCAACCACCAGTTTATCCTGGTTTGTCAACTGTTTGGGGGAGTTTGGCTCGTAGTAAGGCTAAAGGATATCGTGTTGGACCTGTGTATGATGATGTTTTGGCAATGGCCTGGTTTTTCCTTGAGCTAATTGTCAAGTCAATGGGATTGGAGAAGATGCGTCTTTTCTATCATAATCTTCCTTTAGGTGAAGATATTCCGCCTATGCAATTGAAAGAAGGTGTATTCAGATGTATAATGCAGTTGTATGATTGCCTACTAACTGAAGTGCATGAACGTTGTAAGAAGGGATTAAGCTTAGCAAAGCGTTTAAACAGCAGTTTAGCTTTCTTTTGTTATGACCTCTTGTCCATCGTTGAACCTCGCCAAGTTTTTGAATTGGTGTCCTTGTACCTCGACAAGTTTTCTGGGGTTTGCCAACTGGTTCTGCATGATTGCAAGCTCACATTTCTACAAATTATATGCGATCACGACCTTTTTGTGGAAATGCCTGGGAGAGACCCTTCTGATAGGAATTACCTTTCGTCTGTTTTAATACAAGAGCTATTTCTTACATGGGATCATGACGATTTGTCTCTGCGGGCAAAGGCAGCAAGAATTTTGGTAGTCCTTTTGTGCAAGCATGAGTTTGATGCACGATACCAAAAGCCTGAAGATAAACTATATATAGCCCAGCTCTATTTTCCACTTATTGGACAGATTCTTGATGAAATGCCTGTATTTTACAACCTCAATTCTGTTGAAAAGCGTGAAGTTTTGGTTGCAATTTTGCAAATTGTACGGAACCTTGATGATTCATCACTTGTCAAGGCGTGGCAGCAGAGCATTGCTAGAACTAGATTGTTTTTCAAACTCATGGAGGAATGCCTTGTTCTATTTGAGCACAGAAAACCTGCTGATGGCATGCTTATTGGATCTAGTTCTCGCAGTCCTGTTGTTGGTGATGCCCCTGCTTCCCCCAAGTATTCTGATAGACTATCCCCTGCGATCAACAACTATCTGTCTGAAGCATCTAGACAAGAAGTCAGGCCTCAGGGTACTCCTGAAAACAGTTATTCATGGCAGAGAGTAAATTCTCAGTTAAGCTCCCCTAGCCAGCCGTATTCCTTGAGAGAAGCACTGGCTCAGGCACAATCTTCTAGAATTGGAGCTTCTGCTCAAGCATTAAGAGAATCTTTGCATCCAATATTGAGACAAAAATTAGAGCTCTGGGAAGAAAACTTGAGTGCTTCTGTCAGTCTTCAGGTTTTGGAAATAACTGAGAAGTTCTCCATAATGGCAGCATCCCACAGCATTGCCACTGACTACGGAAAATTTGATTGTGTCACAGCCATATTCATGAGCTTCTTCTCTCGAAATCAACCATTGTCTTTTTGGAGATCGATTGCTTCCTGTCTTCAACGGTGTCTTCAATCTTCATGGTGTAACTTTGATGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0006810 GO:0008064 GO:0008150 GO:0008360 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009958 GO:0009966 GO:0009987 GO:0010646 GO:0010928 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0017016 GO:0017048 GO:0019898 GO:0019899 GO:0022603 GO:0022604 GO:0023051 GO:0030832 GO:0031267 GO:0032535 GO:0032956 GO:0032970 GO:0033043 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051020 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0065007 GO:0065008 GO:0065009 GO:0070971 GO:0071840 GO:0071944 GO:0090066 GO:0098772 GO:0110053 GO:1902903

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DHR-2 DOCK-C2

Protein Analysis

1214

Amino Acids

138.01

Weight (kDa)

5.75

Isoelectric Point (pI)

52.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16340 AT4G16340
fragaria_vesca	FvH4_3g14770 FvH4_3g14770 FvH4_3g14770
malus_domestica	MD05G1229900.v1.1 MD05G1233200.v1.1 MD10G1209700.v1.1
prunus_persica	Prupe.3G108400_v2.0.a1 Prupe.4G132800_v2.0.a1
pyrus_communis	pycom05g21080 pycom05g21090 pycom10g17800 pycom10g17820
rosa_chinensis	RchiOBHm_Chr1g0327621 RchiOBHm_Chr3g0473981 RchiOBHm_Chr5g0024291 RchiOBHm_Chr5g0024301 RchiOBHm_Chr5g0024371 RchiOBHm_Chr5g0024381
rosa_laevigata	RLG00000029979 RLG00000032795 RLG00000036969
rosa_multiflora	Rmu_co8048528.1_g000001 Rmu_co8378897.1_g000002 Rmu_sc0005861.1_g000003 Rmu_sc0015218.1_g000005 Rmu_ssc0000042.1_g000009
rosa_roxburghii	Rroxscaffold_1G00054850 Rroxscaffold_1G00054890 Rroxscaffold_1G00055790 Rroxscaffold_1G00055850 Rroxscaffold_4G00322510
rosa_rugosa	Rorug01G0068800 Rorug05G0083000 Rorug05G0083100
rosa_samantha	Rh3AG187600 Rh3BG216300 Rh3CG212800 Rh5AG173700 Rh5BG170500 Rh5BG170900 Rh5BG171900 Rh5BG172000 Rh5CG186800 Rh5CG187500 Rh5CG187600 Rh5DG173100
rosa_wichuraiana	Rw0G000890 Rw3G017190 Rw5G015680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	766
Acc36I	ACCTGC	2 cut(s)	766, 3103
AccB7I	CCANNNNNTGG	4 cut(s)	521, 1223, 1801, 2894
AccI	GTMKAC	2 cut(s)	38, 1489
AccII	CGCG	4 cut(s)	24, 627, 730, 1712
AclI	AACGTT	1 cut(s)	2479
AclWI	GGATC	5 cut(s)	338, 1049, 1062, 2769, 3124
AcoI	YGGCCR	1 cut(s)	83
AcsI	RAATTY	8 cut(s)	70, 1261, 1312, 1441, 1752, 2799, 3274, 3515
AflII	CTTAAG	1 cut(s)	1858
AhdI	GACNNNNNGTC	3 cut(s)	2548, 2773, 3224
AjnI	CCWGG	7 cut(s)	1522, 1619, 1794, 2076, 2221, 2312, 2692
AleI	CACNNNNGTG	1 cut(s)	2117
Alw21I	GWGCWC	3 cut(s)	1948, 3087, 3411
Alw26I	GTCTC	5 cut(s)	789, 1090, 2694, 2781, 3388
Alw44I	GTGCAC	1 cut(s)	1944
AlwI	GGATC	5 cut(s)	338, 1049, 1062, 2769, 3124
AlwNI	CAGNNNCTG	1 cut(s)	860
Ama87I	CYCGRG	2 cut(s)	292, 2115
AoxI	GGCC	4 cut(s)	14, 83, 2310, 3230
ApaLI	GTGCAC	1 cut(s)	1944
ApeKI	GCWGC	8 cut(s)	854, 1248, 1384, 2084, 2122, 2792, 3019, 3482
ApoI	RAATTY	8 cut(s)	70, 1261, 1312, 1441, 1752, 2799, 3274, 3515
ArsI	GACNNNNNNTTYG	2 cut(s)	1408, 1440
Asp700I	GAANNNNTTC	2 cut(s)	1445, 2397
AspLEI	GCGC	4 cut(s)	732, 1746, 1857, 1896
AspS9I	GGNCC	5 cut(s)	167, 200, 1235, 1295, 2282
AsuC2I	CCSGG	2 cut(s)	2116, 2117
AsuHPI	GGTGA	4 cut(s)	139, 2104, 2402, 3155
AsuII	TTCGAA	1 cut(s)	1936
AvaI	CYCGRG	2 cut(s)	292, 2115
AvaII	GGWCC	5 cut(s)	167, 200, 1235, 1295, 2282
AxyI	CCTNAGG	2 cut(s)	1239, 3234
BaeGI	GKGCMC	1 cut(s)	1948
BalI	TGGCCA	1 cut(s)	85
BamHI	GGATCC	1 cut(s)	1054
BanII	GRGCYC	2 cut(s)	1549, 3411
BbsI	GAAGAC	5 cut(s)	304, 1047, 3434, 3590, 3602
Bbv12I	GWGCWC	3 cut(s)	1948, 3087, 3411
BbvI	GCAGC	8 cut(s)	866, 1260, 1396, 2096, 2134, 2804, 3031, 3494
BccI	CCATC	9 cut(s)	658, 917, 953, 1226, 1826, 2055, 2561, 3095, 3629
BceAI	ACGGC	1 cut(s)	3286
BcgI	CGANNNNNNTGC	2 cut(s)	1916, 1950
BciT130I	CCWGG	7 cut(s)	1524, 1621, 1796, 2078, 2223, 2314, 2694
BciVI	GTATCC	4 cut(s)	331, 1521, 1700, 1890
BcnI	CCSGG	2 cut(s)	2116, 2117
BcoDI	GTCTC	5 cut(s)	789, 1090, 2694, 2781, 3388
BfmI	CTRYAG	2 cut(s)	773, 1695
BfrI	CTTAAG	1 cut(s)	1858
BfuAI	ACCTGC	2 cut(s)	766, 3103
BfuI	GTATCC	4 cut(s)	331, 1521, 1700, 1890
BglII	AGATCT	1 cut(s)	465
BlpI	GCTNAGC	3 cut(s)	5, 510, 2500
BmcAI	AGTACT	1 cut(s)	1327
Bme1390I	CCNGG	9 cut(s)	1524, 1621, 1796, 2078, 2116, 2117, 2223, 2314, 2694
Bme18I	GGWCC	5 cut(s)	167, 200, 1235, 1295, 2282
BmeRI	GACNNNNNGTC	3 cut(s)	2548, 2773, 3224
BmeT110I	CYCGRG	2 cut(s)	292, 2115
BmgT120I	GGNCC	5 cut(s)	167, 200, 1235, 1295, 2282
BmiI	GGNNCC	5 cut(s)	201, 1056, 1521, 1782, 2987
BmrFI	CCNGG	9 cut(s)	1524, 1621, 1796, 2078, 2116, 2117, 2223, 2314, 2694
BmrI	ACTGGG	2 cut(s)	133, 279
BmuI	ACTGGG	2 cut(s)	133, 279
BpiI	GAAGAC	5 cut(s)	304, 1047, 3434, 3590, 3602
BplI	GAGNNNNNCTC	6 cut(s)	2058, 2090, 2236, 2268, 3455, 3487
BpmI	CTGGAG	3 cut(s)	1778, 1988, 2060
Bpu10I	CCTNAGC	1 cut(s)	3327
Bpu1102I	GCTNAGC	3 cut(s)	5, 510, 2500
Bpu14I	TTCGAA	1 cut(s)	1936
BpuEI	CTTGAG	4 cut(s)	2345, 3331, 3345, 3445
BpuMI	CCSGG	2 cut(s)	2116, 2117
Bsa29I	ATCGAT	1 cut(s)	3584
BsaAI	YACGTR	1 cut(s)	1405
BsaI	GGTCTC	2 cut(s)	789, 2694
BsaJI	CCNNGG	7 cut(s)	252, 291, 1514, 1949, 2097, 2115, 2693
BsaXI	ACNNNNNCTCC	6 cut(s)	1493, 1523, 1593, 1623, 1776, 1806
Bse1I	ACTGG	8 cut(s)	128, 285, 676, 740, 1104, 2213, 2628, 3327
Bse21I	CCTNAGG	2 cut(s)	1239, 3234
Bse3DI	GCAATG	7 cut(s)	853, 1393, 1512, 2001, 2313, 3027, 3495
BseBI	CCWGG	7 cut(s)	1524, 1621, 1796, 2078, 2223, 2314, 2694
BseCI	ATCGAT	1 cut(s)	3584
BseDI	CCNNGG	7 cut(s)	252, 291, 1514, 1949, 2097, 2115, 2693
BseGI	GGATG	6 cut(s)	139, 1477, 1581, 2023, 3382, 3485
BseMI	GCAATG	7 cut(s)	853, 1393, 1512, 2001, 2313, 3027, 3495
BseNI	ACTGG	8 cut(s)	128, 285, 676, 740, 1104, 2213, 2628, 3327
BseRI	GAGGAG	1 cut(s)	80
BseSI	GKGCMC	1 cut(s)	1948
BseXI	GCAGC	8 cut(s)	866, 1260, 1396, 2096, 2134, 2804, 3031, 3494
BseYI	CCCAGC	1 cut(s)	2874
BsgI	GTGCAG	3 cut(s)	125, 873, 2141
Bsh1236I	CGCG	4 cut(s)	24, 627, 730, 1712
BshFI	GGCC	4 cut(s)	16, 85, 2312, 3232
BshVI	ATCGAT	1 cut(s)	3584
BsiHKAI	GWGCWC	3 cut(s)	1948, 3087, 3411
BsiHKCI	CYCGRG	2 cut(s)	292, 2115
BsiSI	CCGG	1 cut(s)	2116
BsiWI	CGTACG	1 cut(s)	1355
BslFI	GGGAC	1 cut(s)	266
BsmAI	GTCTC	5 cut(s)	789, 1090, 2694, 2781, 3388
BsmFI	GGGAC	1 cut(s)	266
BsmI	GAATGC	2 cut(s)	1034, 3071
BsnI	GGCC	4 cut(s)	16, 85, 2312, 3232
Bso31I	GGTCTC	2 cut(s)	789, 2694
BsoBI	CYCGRG	2 cut(s)	292, 2115
Bsp119I	TTCGAA	1 cut(s)	1936
Bsp1286I	GDGCHC	4 cut(s)	1549, 1948, 3087, 3411
Bsp1720I	GCTNAGC	3 cut(s)	5, 510, 2500
Bsp19I	CCATGG	1 cut(s)	2097
BspANI	GGCC	4 cut(s)	16, 85, 2312, 3232
BspDI	ATCGAT	1 cut(s)	3584
BspFNI	CGCG	4 cut(s)	24, 627, 730, 1712
BspHI	TCATGA	3 cut(s)	919, 2764, 3540
BspLI	GGNNCC	5 cut(s)	201, 1056, 1521, 1782, 2987
BspMAI	CTGCAG	1 cut(s)	777
BspMI	ACCTGC	2 cut(s)	766, 3103
BspPI	GGATC	5 cut(s)	338, 1049, 1062, 2769, 3124
BspT104I	TTCGAA	1 cut(s)	1936
BspTI	CTTAAG	1 cut(s)	1858
BspTNI	GGTCTC	2 cut(s)	789, 2694
BsrDI	GCAATG	7 cut(s)	853, 1393, 1512, 2001, 2313, 3027, 3495
BsrI	ACTGG	8 cut(s)	128, 285, 676, 740, 1104, 2213, 2628, 3327
BssECI	CCNNGG	7 cut(s)	252, 291, 1514, 1949, 2097, 2115, 2693
BssNAI	GTATAC	1 cut(s)	39
BssT1I	CCWWGG	4 cut(s)	252, 1514, 1949, 2097
Bst1107I	GTATAC	1 cut(s)	39
Bst2UI	CCWGG	7 cut(s)	1524, 1621, 1796, 2078, 2223, 2314, 2694
Bst4CI	ACNGT	9 cut(s)	319, 336, 1129, 1420, 1564, 1982, 2236, 3254, 3606
Bst6I	CTCTTC	3 cut(s)	547, 1430, 1938
BstAFI	CTTAAG	1 cut(s)	1858
BstAPI	GCANNNNNTGC	1 cut(s)	772
BstBAI	YACGTR	1 cut(s)	1405
BstBI	TTCGAA	1 cut(s)	1936
BstC8I	GCNNGC	8 cut(s)	11, 690, 1734, 2642, 2784, 2822, 3107, 3299
BstDSI	CCRYGG	1 cut(s)	2097
BstENI	CCTNNNNNAGG	1 cut(s)	1083
BstF5I	GGATG	6 cut(s)	139, 1477, 1581, 2023, 3382, 3485
BstFNI	CGCG	4 cut(s)	24, 627, 730, 1712
BstHHI	GCGC	4 cut(s)	732, 1746, 1857, 1896
BstMAI	GTCTC	5 cut(s)	789, 1090, 2694, 2781, 3388
BstMWI	GCNNNNNNNGC	7 cut(s)	10, 506, 772, 1381, 2093, 2792, 3294
BstNI	CCWGG	7 cut(s)	1524, 1621, 1796, 2078, 2223, 2314, 2694
BstNSI	RCATGY	3 cut(s)	692, 1736, 3109
BstSCI	CCNGG	9 cut(s)	1522, 1619, 1794, 2076, 2114, 2115, 2221, 2312, 2692
BstSFI	CTRYAG	2 cut(s)	773, 1695
BstSLI	GKGCMC	1 cut(s)	1948
BstSNI	TACGTA	1 cut(s)	1405
BstUI	CGCG	4 cut(s)	24, 627, 730, 1712
BstV1I	GCAGC	8 cut(s)	866, 1260, 1396, 2096, 2134, 2804, 3031, 3494
BstV2I	GAAGAC	5 cut(s)	304, 1047, 3434, 3590, 3602
BstX2I	RGATCY	3 cut(s)	465, 1054, 3116
BstYI	RGATCY	3 cut(s)	465, 1054, 3116
BstZ17I	GTATAC	1 cut(s)	39
Bsu15I	ATCGAT	1 cut(s)	3584
Bsu36I	CCTNAGG	2 cut(s)	1239, 3234
BsuI	GTATCC	4 cut(s)	331, 1521, 1700, 1890
BsuRI	GGCC	4 cut(s)	16, 85, 2312, 3232
BsuTUI	ATCGAT	1 cut(s)	3584
BtgI	CCRYGG	1 cut(s)	2097
BtsCI	GGATG	6 cut(s)	139, 1477, 1581, 2023, 3382, 3485
BtsI	GCAGTG	2 cut(s)	86, 113
BtsIMutI	CAGTG	7 cut(s)	86, 113, 207, 477, 1125, 3320, 3501
BveI	ACCTGC	2 cut(s)	766, 3103
Cac8I	GCNNGC	8 cut(s)	11, 690, 1734, 2642, 2784, 2822, 3107, 3299
CaiI	CAGNNNCTG	1 cut(s)	860
CciI	TCATGA	3 cut(s)	919, 2764, 3540
CfoI	GCGC	4 cut(s)	732, 1746, 1857, 1896
Cfr13I	GGNCC	5 cut(s)	167, 200, 1235, 1295, 2282
Cfr9I	CCCGGG	1 cut(s)	2115
ClaI	ATCGAT	1 cut(s)	3584
CseI	GACGC	1 cut(s)	2351
CsiI	ACCWGGT	1 cut(s)	1522
DraI	TTTAAA	1 cut(s)	2514
DriI	GACNNNNNGTC	3 cut(s)	2548, 2773, 3224
EaeI	YGGCCR	1 cut(s)	83
Eam1104I	CTCTTC	3 cut(s)	547, 1430, 1938
Eam1105I	GACNNNNNGTC	3 cut(s)	2548, 2773, 3224
EarI	CTCTTC	3 cut(s)	547, 1430, 1938
EciI	GGCGGA	1 cut(s)	2391
Ecl136II	GAGCTC	1 cut(s)	3409
Eco105I	TACGTA	1 cut(s)	1405
Eco130I	CCWWGG	4 cut(s)	252, 1514, 1949, 2097
Eco147I	AGGCCT	1 cut(s)	3232
Eco24I	GRGCYC	2 cut(s)	1549, 3411
Eco31I	GGTCTC	2 cut(s)	789, 2694
Eco32I	GATATC	1 cut(s)	2273
Eco47I	GGWCC	5 cut(s)	167, 200, 1235, 1295, 2282
Eco53kI	GAGCTC	1 cut(s)	3409
Eco81I	CCTNAGG	2 cut(s)	1239, 3234
Eco88I	CYCGRG	2 cut(s)	292, 2115
EcoICRI	GAGCTC	1 cut(s)	3409
EcoNI	CCTNNNNNAGG	1 cut(s)	1083
EcoO109I	RGGNCCY	1 cut(s)	200
EcoRI	GAATTC	1 cut(s)	1261
EcoRII	CCWGG	7 cut(s)	1522, 1619, 1794, 2076, 2221, 2312, 2692
EcoRV	GATATC	1 cut(s)	2273
EcoT14I	CCWWGG	4 cut(s)	252, 1514, 1949, 2097
EcoT22I	ATGCAT	1 cut(s)	231
EcoT38I	GRGCYC	2 cut(s)	1549, 3411
ErhI	CCWWGG	4 cut(s)	252, 1514, 1949, 2097
FalI	AAGNNNNNCTT	8 cut(s)	1032, 1064, 1829, 1861, 1933, 1965, 3361, 3393
FaqI	GGGAC	1 cut(s)	266
FauI	CCCGC	4 cut(s)	493, 698, 1458, 2775
FblI	GTMKAC	2 cut(s)	38, 1489
FokI	GGATG	6 cut(s)	146, 1484, 1588, 2010, 3369, 3472
FriOI	GRGCYC	2 cut(s)	1549, 3411
GlaI	GCGC	4 cut(s)	731, 1745, 1856, 1895
GsaI	CCCAGC	1 cut(s)	2878
GsuI	CTGGAG	3 cut(s)	1778, 1988, 2060
HaeIII	GGCC	4 cut(s)	16, 85, 2312, 3232
HapII	CCGG	1 cut(s)	2116
HgaI	GACGC	1 cut(s)	2351
HhaI	GCGC	4 cut(s)	732, 1746, 1857, 1896
Hin6I	GCGC	4 cut(s)	730, 1744, 1855, 1894
HinP1I	GCGC	4 cut(s)	730, 1744, 1855, 1894
HincII	GTYRAC	4 cut(s)	1132, 2104, 2207, 2232
HindII	GTYRAC	4 cut(s)	1132, 2104, 2207, 2232
HindIII	AAGCTT	2 cut(s)	1341, 2497
HpaI	GTTAAC	1 cut(s)	2104
HpaII	CCGG	1 cut(s)	2116
HphI	GGTGA	4 cut(s)	139, 2104, 2402, 3155
Hpy166II	GTNNAC	8 cut(s)	39, 745, 1132, 1490, 1946, 2104, 2207, 2232
Hpy8I	GTNNAC	8 cut(s)	39, 745, 1132, 1490, 1946, 2104, 2207, 2232
Hpy99I	CGWCG	1 cut(s)	1876
HpyCH4III	ACNGT	9 cut(s)	319, 336, 1129, 1420, 1564, 1982, 2236, 3254, 3606
HpyCH4IV	ACGT	3 cut(s)	1404, 2172, 2479
HpyF10VI	GCNNNNNNNGC	7 cut(s)	10, 506, 772, 1381, 2093, 2792, 3294
HpySE526I	ACGT	3 cut(s)	1404, 2172, 2479
HspAI	GCGC	4 cut(s)	730, 1744, 1855, 1894
KspAI	GTTAAC	1 cut(s)	2104
LmnI	GCTCC	7 cut(s)	76, 652, 898, 1218, 1690, 3293, 3350
Lsp1109I	GCAGC	8 cut(s)	866, 1260, 1396, 2096, 2134, 2804, 3031, 3494
MabI	ACCWGGT	1 cut(s)	1522
MaeII	ACGT	3 cut(s)	1404, 2172, 2479
MaeIII	GTNAC	8 cut(s)	149, 709, 949, 1162, 1558, 2110, 3526, 3626
MfeI	CAATTG	1 cut(s)	2411
MflI	RGATCY	3 cut(s)	465, 1054, 3116
MhlI	GDGCHC	4 cut(s)	1549, 1948, 3087, 3411
MlsI	TGGCCA	1 cut(s)	85
MluNI	TGGCCA	1 cut(s)	85
MlyI	GAGTC	4 cut(s)	815, 1037, 1438, 2138
MmeI	TCCRAC	5 cut(s)	145, 1293, 1412, 1797, 2260
Mox20I	TGGCCA	1 cut(s)	85
Mph1103I	ATGCAT	1 cut(s)	231
MroXI	GAANNNNTTC	2 cut(s)	1445, 2397
MscI	TGGCCA	1 cut(s)	85
MslI	CAYNNNNRTG	4 cut(s)	924, 1119, 2117, 3539
Msp20I	TGGCCA	1 cut(s)	85
MspCI	CTTAAG	1 cut(s)	1858
MspI	CCGG	1 cut(s)	2116
MspR9I	CCNGG	9 cut(s)	1524, 1621, 1796, 2078, 2116, 2117, 2223, 2314, 2694
MssI	GTTTAAAC	1 cut(s)	2514
MunI	CAATTG	1 cut(s)	2411
Mva1269I	GAATGC	2 cut(s)	1034, 3071
MvaI	CCWGG	7 cut(s)	1524, 1621, 1796, 2078, 2223, 2314, 2694
MvnI	CGCG	4 cut(s)	24, 627, 730, 1712
MwoI	GCNNNNNNNGC	7 cut(s)	10, 506, 772, 1381, 2093, 2792, 3294
NciI	CCSGG	2 cut(s)	2116, 2117
NcoI	CCATGG	1 cut(s)	2097
NlaIV	GGNNCC	5 cut(s)	201, 1056, 1521, 1782, 2987
NmuCI	GTSAC	5 cut(s)	149, 949, 1558, 2110, 3526
NsiI	ATGCAT	1 cut(s)	231
NspI	RCATGY	3 cut(s)	692, 1736, 3109
NspV	TTCGAA	1 cut(s)	1936
OliI	CACNNNNGTG	1 cut(s)	2117
PaeI	GCATGC	3 cut(s)	692, 1736, 3109
PagI	TCATGA	3 cut(s)	919, 2764, 3540
PaqCI	CACCTGC	1 cut(s)	766
PceI	AGGCCT	1 cut(s)	3232
PctI	GAATGC	2 cut(s)	1034, 3071
PdmI	GAANNNNTTC	2 cut(s)	1445, 2397
Pfl23II	CGTACG	1 cut(s)	1355
PflMI	CCANNNNNTGG	4 cut(s)	521, 1223, 1801, 2894
PfoI	TCCNGGA	1 cut(s)	1794
PleI	GAGTC	4 cut(s)	814, 1037, 1437, 2137
PmeI	GTTTAAAC	1 cut(s)	2514
PpsI	GAGTC	4 cut(s)	814, 1037, 1437, 2137
Ppu21I	YACGTR	1 cut(s)	1405
PpuMI	RGGWCCY	1 cut(s)	200
Psp124BI	GAGCTC	1 cut(s)	3411
Psp1406I	AACGTT	1 cut(s)	2479
Psp5II	RGGWCCY	1 cut(s)	200
Psp6I	CCWGG	7 cut(s)	1522, 1619, 1794, 2076, 2221, 2312, 2692
PspFI	CCCAGC	1 cut(s)	2874
PspGI	CCWGG	7 cut(s)	1522, 1619, 1794, 2076, 2221, 2312, 2692
PspLI	CGTACG	1 cut(s)	1355
PspN4I	GGNNCC	5 cut(s)	201, 1056, 1521, 1782, 2987
PspPI	GGNCC	5 cut(s)	167, 200, 1235, 1295, 2282
PspPPI	RGGWCCY	1 cut(s)	200
PstI	CTGCAG	1 cut(s)	777
PstNI	CAGNNNCTG	1 cut(s)	860
PsuI	RGATCY	3 cut(s)	465, 1054, 3116
RseI	CAYNNNNRTG	4 cut(s)	924, 1119, 2117, 3539
SacI	GAGCTC	1 cut(s)	3411
Sau96I	GGNCC	5 cut(s)	167, 200, 1235, 1295, 2282
ScaI	AGTACT	1 cut(s)	1327
SchI	GAGTC	4 cut(s)	815, 1037, 1438, 2138
ScrFI	CCNGG	9 cut(s)	1524, 1621, 1796, 2078, 2116, 2117, 2223, 2314, 2694
SduI	GDGCHC	4 cut(s)	1549, 1948, 3087, 3411
SexAI	ACCWGGT	1 cut(s)	1522
SfcI	CTRYAG	2 cut(s)	773, 1695
SfuI	TTCGAA	1 cut(s)	1936
SinI	GGWCC	5 cut(s)	167, 200, 1235, 1295, 2282
SmaI	CCCGGG	1 cut(s)	2117
SmiMI	CAYNNNNRTG	4 cut(s)	924, 1119, 2117, 3539
SmlI	CTYRAG	5 cut(s)	1858, 2324, 3310, 3360, 3424
SmoI	CTYRAG	5 cut(s)	1858, 2324, 3310, 3360, 3424
SnaBI	TACGTA	1 cut(s)	1405
SphI	GCATGC	3 cut(s)	692, 1736, 3109
SseBI	AGGCCT	1 cut(s)	3232
SspI	AATATT	1 cut(s)	3390
SstI	GAGCTC	1 cut(s)	3411
StuI	AGGCCT	1 cut(s)	3232
StyD4I	CCNGG	9 cut(s)	1522, 1619, 1794, 2076, 2114, 2115, 2221, 2312, 2692
StyI	CCWWGG	4 cut(s)	252, 1514, 1949, 2097
TaaI	ACNGT	9 cut(s)	319, 336, 1129, 1420, 1564, 1982, 2236, 3254, 3606
TaiI	ACGT	3 cut(s)	1407, 2175, 2482
TaqI	TCGA	8 cut(s)	982, 999, 1230, 1849, 1936, 2598, 3556, 3584
TatI	WGTACW	3 cut(s)	331, 742, 1325
TauI	GCSGC	3 cut(s)	16, 24, 1715
TscAI	CASTG	7 cut(s)	86, 113, 214, 477, 1132, 3327, 3508
TseFI	GTSAC	5 cut(s)	149, 949, 1558, 2110, 3526
TseI	GCWGC	8 cut(s)	854, 1248, 1384, 2084, 2122, 2792, 3019, 3482
Tsp45I	GTSAC	5 cut(s)	149, 949, 1558, 2110, 3526
TspGWI	ACGGA	4 cut(s)	24, 1343, 2998, 3525
TspMI	CCCGGG	1 cut(s)	2115
TspRI	CASTG	7 cut(s)	86, 113, 214, 477, 1132, 3327, 3508
Van91I	CCANNNNNTGG	4 cut(s)	521, 1223, 1801, 2894
Vha464I	CTTAAG	1 cut(s)	1858
VneI	GTGCAC	1 cut(s)	1944
VpaK11BI	GGWCC	5 cut(s)	167, 200, 1235, 1295, 2282
XagI	CCTNNNNNAGG	1 cut(s)	1083
XapI	RAATTY	8 cut(s)	70, 1261, 1312, 1441, 1752, 2799, 3274, 3515
XbaI	TCTAGA	2 cut(s)	3215, 3341
XceI	RCATGY	3 cut(s)	692, 1736, 3109
XcmI	CCANNNNNNNNNTGG	2 cut(s)	393, 3573
XmaI	CCCGGG	1 cut(s)	2115
XmiI	GTMKAC	2 cut(s)	38, 1489
XmnI	GAANNNNTTC	2 cut(s)	1445, 2397
ZrmI	AGTACT	1 cut(s)	1327
Zsp2I	ATGCAT	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.