MD06G1094200.v1.1

Late embryogenesis abundant protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Reverse (-)
22562636 .. 22571271
8636 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1094200.v1.1.491

Sequence Viewer

Length: 519 bp
ATGAGTCTTACTGTGATGAAAGTTAAGACCCCCAAGATCATGGTCATAACGGCAATGAGTCTCACTGTCATGAAAGTTAAAACCCCAAAAGTCAGGCTAGGCAACATCAACGTCCAAGAGCTCAACTCCGTCCCGGCATCGCCTTCATTCGACACCAAATTCACCACCCAAATCAGAGTAAAGAACACAAATTTTGGTCCATACAAGTTTGATGCAGCCATTGTCACGTTTTTGTACCAAGGTGCGACTGTCGGGCAAGTTTCTATTCCAAAGAGCAAGGCTGGAATGCTTTCCACCAAAAAAATTGACGTCGAGGTGAGCTTGAGTTCAAGTGCATTGAGCAGTTCCAATCTTGGCAGTGAATTGAGCAGTGGGGTGTTGACCCTCAACAGCGCGGCTAAGTTGACTGGAAAGGTTGAACTTATGTTTATAATGAAGAAGAAGAAGTCTTCCACCATGGACTGCACCATTGCATTTGATTTGTCATCAAAGACGCTTAAAAGTTTGCAGTGCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

173

Amino Acids

18.51

Weight (kDa)

10.01

Isoelectric Point (pI)

27.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 58 - 156 4.4e-06 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000065)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64065
fragaria_vesca FvH4_1g02250 FvH4_4g18381 FvH4_5g03320 FvH4_5g03331 FvH4_5g03333 FvH4_5g03334 FvH4_5g03340 FvH4_5g03342 FvH4_5g03344 FvH4_5g03370 FvH4_5g03391 FvH4_5g03400 FvH4_5g03430 FvH4_5g03450 FvH4_7g30570
malus_domestica MD06G1091500.v1.1 MD06G1093100.v1.1 MD06G1093400.v1.1 MD06G1093600.v1.1 MD06G1093700.v1.1 MD06G1093800.v1.1 MD06G1094000.v1.1 MD06G1094100.v1.1 MD06G1094200.v1.1 MD06G1094300.v1.1 MD06G1094400.v1.1 MD06G1094500.v1.1 MD06G1094600.v1.1 MD07G1281600.v1.1 MD14G1113800.v1.1 MD14G1114100.v1.1 MD14G1114500.v1.1 MD14G1114600.v1.1 MD14G1114700.v1.1 MD14G1114800.v1.1 MD15G1164000.v1.1
prunus_persica Prupe.2G303300_v2.0.a1 Prupe.5G108800_v2.0.a1 Prupe.5G109700_v2.0.a1 Prupe.5G109800_v2.0.a1 Prupe.7G233300_v2.0.a1
pyrus_communis pycom01g22140 pycom02g01830 pycom03g14740 pycom06g08690 pycom06g08710 pycom06g08720 pycom06g08900 pycom06g08970 pycom06g09040 pycom06g09090 pycom06g09100 pycom06g09120 pycom06g09130 pycom06g09140
rosa_chinensis RchiOBHm_Chr1g0379411 RchiOBHm_Chr2g0087371 RchiOBHm_Chr5g0019191 RchiOBHm_Chr7g0196211 RchiOBHm_Chr7g0196241 RchiOBHm_Chr7g0196251 RchiOBHm_Chr7g0196271 RchiOBHm_Chr7g0196311 RchiOBHm_Chr7g0196321 RchiOBHm_Chr7g0196331 RchiOBHm_Chr7g0196341 RchiOBHm_Chr7g0196381 RchiOBHm_Chr7g0196391 RchiOBHm_Chr7g0196401 RchiOBHm_Chr7g0196411 RchiOBHm_Chr7g0196421 RchiOBHm_Chr7g0196431 RchiOBHm_Chr7g0196441 RchiOBHm_Chr7g0196461 RchiOBHm_Chr7g0209531 RchiOBHm_Chr7g0209541 RchiOBHm_Chr7g0209551 RchiOBHm_Chr7g0209571 RchiOBHm_Chr7g0209581 RchiOBHm_Chr7g0209591 RchiOBHm_Chr7g0211821 RchiOBHm_Chr7g0222831 RchiOBHm_Chr7g0222841 RchiOBHm_Chr7g0222851 RchiOBHm_Chr7g0222871 RchiOBHm_Chr7g0222881 RchiOBHm_Chr7g0222891 RchiOBHm_Chr7g0222901
rosa_laevigata RLG00000002015 RLG00000002016 RLG00000002017 RLG00000002018 RLG00000002019 RLG00000002020 RLG00000002021 RLG00000002023 RLG00000002024 RLG00000002963 RLG00000003114 RLG00000003115 RLG00000003117 RLG00000003119 RLG00000003121 RLG00000004013 RLG00000004015 RLG00000004016 RLG00000004017 RLG00000004018 RLG00000004019 RLG00000004020 RLG00000004021 RLG00000004022 RLG00000004023 RLG00000004024 RLG00000004025 RLG00000004026 RLG00000004027 RLG00000004029 RLG00000004030 RLG00000004032 RLG00000004033 RLG00000004034 RLG00000004035 RLG00000004037 RLG00000004038 RLG00000004043 RLG00000004044 RLG00000004046 RLG00000004047 RLG00000004048 RLG00000004050 RLG00000015860 RLG00000024213 RLG00000024219 RLG00000026400 RLG00000032427
rosa_multiflora Rmu_co8316975.1_g000001 Rmu_co8321397.1_g000001 Rmu_co8336999.1_g000001 Rmu_co8388981.1_g000001 Rmu_co8425655.1_g000002 Rmu_co8482553.1_g000001 Rmu_sc0000243.1_g000008 Rmu_sc0000243.1_g000011 Rmu_sc0000243.1_g000015 Rmu_sc0000243.1_g000019 Rmu_sc0000243.1_g000021 Rmu_sc0000243.1_g000022 Rmu_sc0000736.1_g000005 Rmu_sc0001867.1_g000001 Rmu_sc0001867.1_g000002 Rmu_sc0001867.1_g000004 Rmu_sc0001867.1_g000005 Rmu_sc0002142.1_g000002 Rmu_sc0005676.1_g000014 Rmu_sc0005993.1_g000004 Rmu_sc0005993.1_g000009 Rmu_sc0006064.1_g000004 Rmu_sc0006761.1_g000012 Rmu_sc0006761.1_g000015 Rmu_sc0007292.1_g000017 Rmu_sc0007292.1_g000022 Rmu_sc0007292.1_g000027 Rmu_sc0007292.1_g000030 Rmu_sc0008126.1_g000003 Rmu_sc0008126.1_g000004 Rmu_sc0008581.1_g000010 Rmu_sc0008581.1_g000011 Rmu_sc0008581.1_g000012 Rmu_sc0008828.1_g000008 Rmu_sc0008828.1_g000009 Rmu_sc0008884.1_g000001 Rmu_sc0008884.1_g000002 Rmu_sc0008884.1_g000007 Rmu_sc0008884.1_g000008 Rmu_sc0008884.1_g000009 Rmu_sc0009474.1_g000001 Rmu_sc0009738.1_g000002 Rmu_sc0009738.1_g000003 Rmu_sc0011534.1_g000002 Rmu_sc0011534.1_g000003 Rmu_sc0013801.1_g000001 Rmu_sc0013801.1_g000008 Rmu_sc0013801.1_g000014 Rmu_sc0013801.1_g000015 Rmu_sc0018549.1_g000001 Rmu_sc0022712.1_g000001 Rmu_sc0023035.1_g000001 Rmu_sc0030855.1_g000001 Rmu_sc0030855.1_g000002 Rmu_sc0033647.1_g000003 Rmu_sc0034421.1_g000001 Rmu_sc0038138.1_g000001
rosa_roxburghii Rroxscaffold_1G00058800 Rroxscaffold_1G00074140 Rroxscaffold_2G00153660 Rroxscaffold_3G00236440 Rroxscaffold_3G00236450 Rroxscaffold_3G00236460 Rroxscaffold_3G00236470 Rroxscaffold_3G00236480 Rroxscaffold_3G00247410 Rroxscaffold_3G00249230 Rroxscaffold_3G00249250 Rroxscaffold_3G00249260 Rroxscaffold_3G00249280 Rroxscaffold_3G00259300 Rroxscaffold_3G00259320 Rroxscaffold_3G00259330 Rroxscaffold_3G00259340 Rroxscaffold_3G00259360 Rroxscaffold_3G00259370 Rroxscaffold_3G00259380 Rroxscaffold_3G00259390 Rroxscaffold_3G00259400 Rroxscaffold_3G00259440 Rroxscaffold_3G00259450 Rroxscaffold_3G00259460 Rroxscaffold_3G00259470 Rroxscaffold_3G00259480 Rroxscaffold_3G00259500 Rroxscaffold_3G00259510 Rroxscaffold_3G00259530 Rroxscaffold_3G00259550 Rroxscaffold_3G00259560 Rroxscaffold_3G00259580 Rroxscaffold_3G00259590 Rroxscaffold_3G00259600 Rroxscaffold_3G00259630 Rroxscaffold_4G00280180
rosa_rugosa Rorug01G0411900 Rorug07G0032100 Rorug07G0032200 Rorug07G0032300 Rorug07G0032300 Rorug07G0032400 Rorug07G0032700 Rorug07G0032800 Rorug07G0032900 Rorug07G0033000 Rorug07G0033100 Rorug07G0033100 Rorug07G0033100 Rorug07G0033100 Rorug07G0033100 Rorug07G0033200 Rorug07G0033300 Rorug07G0033300 Rorug07G0033400 Rorug07G0033500 Rorug07G0033500 Rorug07G0033500 Rorug07G0033500 Rorug07G0114200 Rorug07G0114400.1 Rorug07G0128900
rosa_samantha Rh1CG404900 Rh1DG423100 Rh2BG027600 Rh5BG138600 Rh7AG157700 Rh7AG261600 Rh7BG159300 Rh7BG159400 Rh7BG255200 Rh7CG163400 Rh7CG163500 Rh7CG163600 Rh7CG163800 Rh7CG164000 Rh7CG164100 Rh7CG164200 Rh7CG164400 Rh7CG164500 Rh7CG164600 Rh7CG164700 Rh7CG164800 Rh7CG164900 Rh7CG165000 Rh7CG165100 Rh7CG165200 Rh7CG165300 Rh7CG165400 Rh7CG165500 Rh7CG165600 Rh7CG165800 Rh7CG165900 Rh7CG166000 Rh7CG166200 Rh7CG263800 Rh7CG264000 Rh7CG264100 Rh7CG264200 Rh7CG264300 Rh7CG264400 Rh7CG278200 Rh7CG374700 Rh7CG374800 Rh7CG375000 Rh7CG375100 Rh7CG375200 Rh7CG375300 Rh7DG158700 Rh7DG158800 Rh7DG268200
rosa_wichuraiana Rw1G037980 Rw2G002230 Rw5G012400 Rw7G013490 Rw7G013500 Rw7G013600 Rw7G013610 Rw7G013640 Rw7G013650 Rw7G013660 Rw7G013670 Rw7G013690 Rw7G013700 Rw7G013710 Rw7G013730 Rw7G013740 Rw7G013750 Rw7G013760 Rw7G013770 Rw7G013780 Rw7G013800 Rw7G020960 Rw7G020970 Rw7G020990 Rw7G021000 Rw7G021010 Rw7G021020 Rw7G021030 Rw7G021040 Rw7G021050 Rw7G022310 Rw7G030300 Rw7G030310 Rw7G030320 Rw7G030330 Rw7G030340 Rw7G030350 Rw7G030360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 431
AatII GACGTC 1 cut(s) 312
AccII CGCG 1 cut(s) 395
AciI CCGC 1 cut(s) 395
AcsI RAATTY 2 cut(s) 158, 190
AcyI GRCGYC 1 cut(s) 309
AfaI GTAC 1 cut(s) 236
AgsI TTSAA 2 cut(s) 330, 419
AluBI AGCT 2 cut(s) 121, 321
AluI AGCT 2 cut(s) 121, 321
Alw21I GWGCWC 1 cut(s) 123
Alw26I GTCTC 1 cut(s) 65
ApeKI GCWGC 1 cut(s) 215
ApoI RAATTY 2 cut(s) 158, 190
Asp700I GAANNNNTTC 1 cut(s) 289
AspLEI GCGC 1 cut(s) 395
AspS9I GGNCC 1 cut(s) 197
AsuC2I CCSGG 1 cut(s) 134
AsuHPI GGTGA 2 cut(s) 154, 328
AvaII GGWCC 1 cut(s) 197
BanII GRGCYC 1 cut(s) 123
BbsI GAAGAC 1 cut(s) 441
Bbv12I GWGCWC 1 cut(s) 123
BbvI GCAGC 1 cut(s) 227
BceAI ACGGC 1 cut(s) 66
BcnI CCSGG 1 cut(s) 134
BcoDI GTCTC 1 cut(s) 65
BfaI CTAG 1 cut(s) 98
BisI GCNGC 2 cut(s) 216, 396
BlsI GCNGC 2 cut(s) 217, 397
Bme1390I CCNGG 1 cut(s) 134
Bme18I GGWCC 1 cut(s) 197
BmgT120I GGNCC 1 cut(s) 197
BmrFI CCNGG 1 cut(s) 134
BmsI GCATC 2 cut(s) 146, 202
BpiI GAAGAC 1 cut(s) 441
BplI GAGNNNNNCTC 2 cut(s) 110, 142
BpuEI CTTGAG 1 cut(s) 343
BpuMI CCSGG 1 cut(s) 134
BsaHI GRCGYC 1 cut(s) 309
BsaJI CCNNGG 2 cut(s) 238, 456
Bse1I ACTGG 1 cut(s) 412
Bse3DI GCAATG 2 cut(s) 60, 468
BseDI CCNNGG 2 cut(s) 238, 456
BseMI GCAATG 2 cut(s) 60, 468
BseNI ACTGG 1 cut(s) 412
BseXI GCAGC 1 cut(s) 227
BsgI GTGCAG 1 cut(s) 448
Bsh1236I CGCG 1 cut(s) 395
BsiHKAI GWGCWC 1 cut(s) 123
BsiSI CCGG 1 cut(s) 134
BslFI GGGAC 1 cut(s) 116
BsmAI GTCTC 1 cut(s) 65
BsmFI GGGAC 1 cut(s) 116
BsmI GAATGC 1 cut(s) 291
Bsp1286I GDGCHC 1 cut(s) 123
Bsp143I GATC 1 cut(s) 36
Bsp19I CCATGG 1 cut(s) 456
BspACI CCGC 1 cut(s) 395
BspFNI CGCG 1 cut(s) 395
BspHI TCATGA 1 cut(s) 69
BsrDI GCAATG 2 cut(s) 60, 468
BsrI ACTGG 1 cut(s) 412
BssECI CCNNGG 2 cut(s) 238, 456
BssMI GATC 1 cut(s) 36
BssNI GRCGYC 1 cut(s) 309
BssT1I CCWWGG 2 cut(s) 238, 456
Bst4CI ACNGT 3 cut(s) 13, 67, 250
BstACI GRCGYC 1 cut(s) 309
BstDEI CTNAG 1 cut(s) 399
BstDSI CCRYGG 1 cut(s) 456
BstFNI CGCG 1 cut(s) 395
BstHHI GCGC 1 cut(s) 395
BstKTI GATC 1 cut(s) 39
BstMAI GTCTC 1 cut(s) 65
BstMBI GATC 1 cut(s) 36
BstSCI CCNGG 1 cut(s) 132
BstUI CGCG 1 cut(s) 395
BstV1I GCAGC 1 cut(s) 227
BstV2I GAAGAC 1 cut(s) 441
BstXI CCANNNNNNTGG 1 cut(s) 40
BtgI CCRYGG 1 cut(s) 456
BtgZI GCGATG 1 cut(s) 123
BtsI GCAGTG 3 cut(s) 364, 376, 515
BtsIMutI CAGTG 4 cut(s) 63, 364, 376, 515
CciI TCATGA 1 cut(s) 69
CfoI GCGC 1 cut(s) 395
Cfr13I GGNCC 1 cut(s) 197
CseI GACGC 1 cut(s) 502
Csp6I GTAC 1 cut(s) 235
CviAII CATG 3 cut(s) 40, 70, 457
CviJI RGCY 6 cut(s) 97, 121, 218, 281, 321, 398
CviKI_1 RGCY 6 cut(s) 97, 121, 218, 281, 321, 398
CviQI GTAC 1 cut(s) 235
DdeI CTNAG 1 cut(s) 399
DpnI GATC 1 cut(s) 38
DpnII GATC 1 cut(s) 36
Ecl136II GAGCTC 1 cut(s) 121
Eco130I CCWWGG 2 cut(s) 238, 456
Eco24I GRGCYC 1 cut(s) 123
Eco47I GGWCC 1 cut(s) 197
Eco53kI GAGCTC 1 cut(s) 121
EcoICRI GAGCTC 1 cut(s) 121
EcoT14I CCWWGG 2 cut(s) 238, 456
EcoT38I GRGCYC 1 cut(s) 123
ErhI CCWWGG 2 cut(s) 238, 456
FaeI CATG 3 cut(s) 43, 73, 460
FaiI YATR 7 cut(s) 41, 47, 71, 202, 425, 431, 458
FaqI GGGAC 1 cut(s) 116
FatI CATG 3 cut(s) 39, 69, 456
Fnu4HI GCNGC 2 cut(s) 216, 396
FriOI GRGCYC 1 cut(s) 123
Fsp4HI GCNGC 2 cut(s) 216, 396
FspBI CTAG 1 cut(s) 98
GlaI GCGC 1 cut(s) 394
GluI GCNGC 2 cut(s) 216, 396
HapII CCGG 1 cut(s) 134
HgaI GACGC 1 cut(s) 502
HhaI GCGC 1 cut(s) 395
Hin1I GRCGYC 1 cut(s) 309
Hin1II CATG 3 cut(s) 43, 73, 460
Hin6I GCGC 1 cut(s) 393
HinP1I GCGC 1 cut(s) 393
HincII GTYRAC 2 cut(s) 381, 405
HindII GTYRAC 2 cut(s) 381, 405
HinfI GANTC 2 cut(s) 4, 58
HpaII CCGG 1 cut(s) 134
HphI GGTGA 2 cut(s) 154, 328
Hpy166II GTNNAC 2 cut(s) 381, 405
Hpy188I TCNGA 1 cut(s) 176
Hpy188III TCNNGA 1 cut(s) 70
Hpy8I GTNNAC 2 cut(s) 381, 405
Hpy99I CGWCG 1 cut(s) 314
HpyAV CCTTC 1 cut(s) 153
HpyCH4III ACNGT 3 cut(s) 13, 67, 250
HpyCH4IV ACGT 3 cut(s) 111, 227, 309
HpyCH4V TGCA 6 cut(s) 215, 335, 465, 473, 508, 513
HpyF3I CTNAG 1 cut(s) 399
HpySE526I ACGT 3 cut(s) 111, 227, 309
Hsp92I GRCGYC 1 cut(s) 309
Hsp92II CATG 3 cut(s) 43, 73, 460
HspAI GCGC 1 cut(s) 393
Kzo9I GATC 1 cut(s) 36
LpnPI CCDG 4 cut(s) 79, 147, 267, 393
Lsp1109I GCAGC 1 cut(s) 227
LweI GCATC 2 cut(s) 146, 202
MaeI CTAG 1 cut(s) 98
MaeII ACGT 3 cut(s) 111, 227, 309
MaeIII GTNAC 1 cut(s) 223
MalI GATC 1 cut(s) 38
MboI GATC 1 cut(s) 36
MboII GAAGA 4 cut(s) 441, 448, 451, 454
MhlI GDGCHC 1 cut(s) 123
MluCI AATT 4 cut(s) 158, 190, 303, 362
MlyI GAGTC 2 cut(s) 13, 67
MnlI CCTC 2 cut(s) 307, 395
MroXI GAANNNNTTC 1 cut(s) 289
MseI TTAA 3 cut(s) 24, 78, 498
MslI CAYNNNNRTG 1 cut(s) 68
MspI CCGG 1 cut(s) 134
MspR9I CCNGG 1 cut(s) 134
Mva1269I GAATGC 1 cut(s) 291
MvnI CGCG 1 cut(s) 395
NciI CCSGG 1 cut(s) 134
NcoI CCATGG 1 cut(s) 456
NdeII GATC 1 cut(s) 36
NlaIII CATG 3 cut(s) 43, 73, 460
NmuCI GTSAC 1 cut(s) 223
PagI TCATGA 1 cut(s) 69
PctI GAATGC 1 cut(s) 291
PdmI GAANNNNTTC 1 cut(s) 289
PkrI GCNGC 2 cut(s) 217, 397
PleI GAGTC 2 cut(s) 12, 66
PpsI GAGTC 2 cut(s) 12, 66
PsiI TTATAA 1 cut(s) 431
Psp124BI GAGCTC 1 cut(s) 123
PspPI GGNCC 1 cut(s) 197
RsaI GTAC 1 cut(s) 236
RsaNI GTAC 1 cut(s) 235
RseI CAYNNNNRTG 1 cut(s) 68
SacI GAGCTC 1 cut(s) 123
SaqAI TTAA 3 cut(s) 24, 78, 498
SatI GCNGC 2 cut(s) 216, 396
Sau3AI GATC 1 cut(s) 36
Sau96I GGNCC 1 cut(s) 197
SchI GAGTC 2 cut(s) 13, 67
ScrFI CCNGG 1 cut(s) 134
SduI GDGCHC 1 cut(s) 123
SetI ASST 8 cut(s) 114, 123, 230, 244, 312, 318, 323, 417
SfaNI GCATC 2 cut(s) 146, 202
SinI GGWCC 1 cut(s) 197
SmiMI CAYNNNNRTG 1 cut(s) 68
SmlI CTYRAG 1 cut(s) 322
SmoI CTYRAG 1 cut(s) 322
Sse9I AATT 4 cut(s) 158, 190, 303, 362
SsiI CCGC 1 cut(s) 395
SspMI CTAG 1 cut(s) 98
SstI GAGCTC 1 cut(s) 123
StyD4I CCNGG 1 cut(s) 132
StyI CCWWGG 2 cut(s) 238, 456
TaaI ACNGT 3 cut(s) 13, 67, 250
TaiI ACGT 3 cut(s) 114, 230, 312
TaqI TCGA 2 cut(s) 150, 312
TasI AATT 4 cut(s) 158, 190, 303, 362
TauI GCSGC 1 cut(s) 398
Tru1I TTAA 3 cut(s) 24, 78, 498
Tru9I TTAA 3 cut(s) 24, 78, 498
TscAI CASTG 4 cut(s) 70, 364, 376, 515
TseFI GTSAC 1 cut(s) 223
TseI GCWGC 1 cut(s) 215
Tsp45I GTSAC 1 cut(s) 223
TspDTI ATGAA 4 cut(s) 32, 86, 135, 449
TspGWI ACGGA 1 cut(s) 118
TspRI CASTG 4 cut(s) 70, 364, 376, 515
VpaK11BI GGWCC 1 cut(s) 197
XapI RAATTY 2 cut(s) 158, 190
XmnI GAANNNNTTC 1 cut(s) 289
XspI CTAG 1 cut(s) 98
ZraI GACGTC 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.