Rw7G030310

Late embryogenesis abundant protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Reverse (-)
42980024 .. 42980638
615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G030310.1

Sequence Viewer

Length: 615 bp
ATGTTTGCCTCAGCAAATGGCTACTCCAGAAAGGATGAAGAATTTGCCACCTTGCAATCCAAAGATGATCAGCTCAAACGCCAAAAGAGAATCAAATTGGCTATGTATATTGGTGGTTTCATTGTGTTTCAGATCATAGTGATGACCGTATTTGGTCTCACTGTGATGAAAGTTAAGACCCCAAAAGTCAGGTTAGGTGCCATCAACGTCCAAAGCCTCAACTCTGTCCCTGCCACACCTTCATTTGACACAACCTTCACAACCCAAATCAGGGTCAAGAACACAAACTGGGGACCTTATAAGTTCGATGCAAGCACTGCAATGTTCATGTACCAAGGCTTGGCTGTGGGGCAAGTTAGTATTCCTAAGAGCAAGGCTGGCATGCGTTCCACCAAAAAGATTGATGTCACAGTGAGTTTGAATTCCAATGTATTGCCAGGCTCAAATCTCGGAAGTGATTTGAATGGTGGGATCTTGACCCTCAGCAGCCAAGCTAAATTGACCGGAAAGGTTGAACTCATGCTCATCATGAGGAAAAAGAAGTCGACTAATATGGACTGTACCATAGCATTTGATCTGTCCGCCAAGGTGGTCCAAACTTTACAATGCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

204

Amino Acids

22.38

Weight (kDa)

10.04

Isoelectric Point (pI)

25.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 90 - 188 8.3e-07 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000065)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64065
fragaria_vesca FvH4_1g02250 FvH4_4g18381 FvH4_5g03320 FvH4_5g03331 FvH4_5g03333 FvH4_5g03334 FvH4_5g03340 FvH4_5g03342 FvH4_5g03344 FvH4_5g03370 FvH4_5g03391 FvH4_5g03400 FvH4_5g03430 FvH4_5g03450 FvH4_7g30570
malus_domestica MD06G1091500.v1.1 MD06G1093100.v1.1 MD06G1093400.v1.1 MD06G1093600.v1.1 MD06G1093700.v1.1 MD06G1093800.v1.1 MD06G1094000.v1.1 MD06G1094100.v1.1 MD06G1094200.v1.1 MD06G1094300.v1.1 MD06G1094400.v1.1 MD06G1094500.v1.1 MD06G1094600.v1.1 MD07G1281600.v1.1 MD14G1113800.v1.1 MD14G1114100.v1.1 MD14G1114500.v1.1 MD14G1114600.v1.1 MD14G1114700.v1.1 MD14G1114800.v1.1 MD15G1164000.v1.1
prunus_persica Prupe.2G303300_v2.0.a1 Prupe.5G108800_v2.0.a1 Prupe.5G109700_v2.0.a1 Prupe.5G109800_v2.0.a1 Prupe.7G233300_v2.0.a1
pyrus_communis pycom01g22140 pycom02g01830 pycom03g14740 pycom06g08690 pycom06g08710 pycom06g08720 pycom06g08900 pycom06g08970 pycom06g09040 pycom06g09090 pycom06g09100 pycom06g09120 pycom06g09130 pycom06g09140
rosa_chinensis RchiOBHm_Chr1g0379411 RchiOBHm_Chr2g0087371 RchiOBHm_Chr5g0019191 RchiOBHm_Chr7g0196211 RchiOBHm_Chr7g0196241 RchiOBHm_Chr7g0196251 RchiOBHm_Chr7g0196271 RchiOBHm_Chr7g0196311 RchiOBHm_Chr7g0196321 RchiOBHm_Chr7g0196331 RchiOBHm_Chr7g0196341 RchiOBHm_Chr7g0196381 RchiOBHm_Chr7g0196391 RchiOBHm_Chr7g0196401 RchiOBHm_Chr7g0196411 RchiOBHm_Chr7g0196421 RchiOBHm_Chr7g0196431 RchiOBHm_Chr7g0196441 RchiOBHm_Chr7g0196461 RchiOBHm_Chr7g0209531 RchiOBHm_Chr7g0209541 RchiOBHm_Chr7g0209551 RchiOBHm_Chr7g0209571 RchiOBHm_Chr7g0209581 RchiOBHm_Chr7g0209591 RchiOBHm_Chr7g0211821 RchiOBHm_Chr7g0222831 RchiOBHm_Chr7g0222841 RchiOBHm_Chr7g0222851 RchiOBHm_Chr7g0222871 RchiOBHm_Chr7g0222881 RchiOBHm_Chr7g0222891 RchiOBHm_Chr7g0222901
rosa_laevigata RLG00000002015 RLG00000002016 RLG00000002017 RLG00000002018 RLG00000002019 RLG00000002020 RLG00000002021 RLG00000002023 RLG00000002024 RLG00000002963 RLG00000003114 RLG00000003115 RLG00000003117 RLG00000003119 RLG00000003121 RLG00000004013 RLG00000004015 RLG00000004016 RLG00000004017 RLG00000004018 RLG00000004019 RLG00000004020 RLG00000004021 RLG00000004022 RLG00000004023 RLG00000004024 RLG00000004025 RLG00000004026 RLG00000004027 RLG00000004029 RLG00000004030 RLG00000004032 RLG00000004033 RLG00000004034 RLG00000004035 RLG00000004037 RLG00000004038 RLG00000004043 RLG00000004044 RLG00000004046 RLG00000004047 RLG00000004048 RLG00000004050 RLG00000015860 RLG00000024213 RLG00000024219 RLG00000026400 RLG00000032427
rosa_multiflora Rmu_co8316975.1_g000001 Rmu_co8321397.1_g000001 Rmu_co8336999.1_g000001 Rmu_co8388981.1_g000001 Rmu_co8425655.1_g000002 Rmu_co8482553.1_g000001 Rmu_sc0000243.1_g000008 Rmu_sc0000243.1_g000011 Rmu_sc0000243.1_g000015 Rmu_sc0000243.1_g000019 Rmu_sc0000243.1_g000021 Rmu_sc0000243.1_g000022 Rmu_sc0000736.1_g000005 Rmu_sc0001867.1_g000001 Rmu_sc0001867.1_g000002 Rmu_sc0001867.1_g000004 Rmu_sc0001867.1_g000005 Rmu_sc0002142.1_g000002 Rmu_sc0005676.1_g000014 Rmu_sc0005993.1_g000004 Rmu_sc0005993.1_g000009 Rmu_sc0006064.1_g000004 Rmu_sc0006761.1_g000012 Rmu_sc0006761.1_g000015 Rmu_sc0007292.1_g000017 Rmu_sc0007292.1_g000022 Rmu_sc0007292.1_g000027 Rmu_sc0007292.1_g000030 Rmu_sc0008126.1_g000003 Rmu_sc0008126.1_g000004 Rmu_sc0008581.1_g000010 Rmu_sc0008581.1_g000011 Rmu_sc0008581.1_g000012 Rmu_sc0008828.1_g000008 Rmu_sc0008828.1_g000009 Rmu_sc0008884.1_g000001 Rmu_sc0008884.1_g000002 Rmu_sc0008884.1_g000007 Rmu_sc0008884.1_g000008 Rmu_sc0008884.1_g000009 Rmu_sc0009474.1_g000001 Rmu_sc0009738.1_g000002 Rmu_sc0009738.1_g000003 Rmu_sc0011534.1_g000002 Rmu_sc0011534.1_g000003 Rmu_sc0013801.1_g000001 Rmu_sc0013801.1_g000008 Rmu_sc0013801.1_g000014 Rmu_sc0013801.1_g000015 Rmu_sc0018549.1_g000001 Rmu_sc0022712.1_g000001 Rmu_sc0023035.1_g000001 Rmu_sc0030855.1_g000001 Rmu_sc0030855.1_g000002 Rmu_sc0033647.1_g000003 Rmu_sc0034421.1_g000001 Rmu_sc0038138.1_g000001
rosa_roxburghii Rroxscaffold_1G00058800 Rroxscaffold_1G00074140 Rroxscaffold_2G00153660 Rroxscaffold_3G00236440 Rroxscaffold_3G00236450 Rroxscaffold_3G00236460 Rroxscaffold_3G00236470 Rroxscaffold_3G00236480 Rroxscaffold_3G00247410 Rroxscaffold_3G00249230 Rroxscaffold_3G00249250 Rroxscaffold_3G00249260 Rroxscaffold_3G00249280 Rroxscaffold_3G00259300 Rroxscaffold_3G00259320 Rroxscaffold_3G00259330 Rroxscaffold_3G00259340 Rroxscaffold_3G00259360 Rroxscaffold_3G00259370 Rroxscaffold_3G00259380 Rroxscaffold_3G00259390 Rroxscaffold_3G00259400 Rroxscaffold_3G00259440 Rroxscaffold_3G00259450 Rroxscaffold_3G00259460 Rroxscaffold_3G00259470 Rroxscaffold_3G00259480 Rroxscaffold_3G00259500 Rroxscaffold_3G00259510 Rroxscaffold_3G00259530 Rroxscaffold_3G00259550 Rroxscaffold_3G00259560 Rroxscaffold_3G00259580 Rroxscaffold_3G00259590 Rroxscaffold_3G00259600 Rroxscaffold_3G00259630 Rroxscaffold_4G00280180
rosa_rugosa Rorug01G0411900 Rorug07G0032100 Rorug07G0032200 Rorug07G0032300 Rorug07G0032300 Rorug07G0032400 Rorug07G0032700 Rorug07G0032800 Rorug07G0032900 Rorug07G0033000 Rorug07G0033100 Rorug07G0033100 Rorug07G0033100 Rorug07G0033100 Rorug07G0033100 Rorug07G0033200 Rorug07G0033300 Rorug07G0033300 Rorug07G0033400 Rorug07G0033500 Rorug07G0033500 Rorug07G0033500 Rorug07G0033500 Rorug07G0114200 Rorug07G0114400.1 Rorug07G0128900
rosa_samantha Rh1CG404900 Rh1DG423100 Rh2BG027600 Rh5BG138600 Rh7AG157700 Rh7AG261600 Rh7BG159300 Rh7BG159400 Rh7BG255200 Rh7CG163400 Rh7CG163500 Rh7CG163600 Rh7CG163800 Rh7CG164000 Rh7CG164100 Rh7CG164200 Rh7CG164400 Rh7CG164500 Rh7CG164600 Rh7CG164700 Rh7CG164800 Rh7CG164900 Rh7CG165000 Rh7CG165100 Rh7CG165200 Rh7CG165300 Rh7CG165400 Rh7CG165500 Rh7CG165600 Rh7CG165800 Rh7CG165900 Rh7CG166000 Rh7CG166200 Rh7CG263800 Rh7CG264000 Rh7CG264100 Rh7CG264200 Rh7CG264300 Rh7CG264400 Rh7CG278200 Rh7CG374700 Rh7CG374800 Rh7CG375000 Rh7CG375100 Rh7CG375200 Rh7CG375300 Rh7DG158700 Rh7DG158800 Rh7DG268200
rosa_wichuraiana Rw1G037980 Rw2G002230 Rw5G012400 Rw7G013490 Rw7G013500 Rw7G013600 Rw7G013610 Rw7G013640 Rw7G013650 Rw7G013660 Rw7G013670 Rw7G013690 Rw7G013700 Rw7G013710 Rw7G013730 Rw7G013740 Rw7G013750 Rw7G013760 Rw7G013770 Rw7G013780 Rw7G013800 Rw7G020960 Rw7G020970 Rw7G020990 Rw7G021000 Rw7G021010 Rw7G021020 Rw7G021030 Rw7G021040 Rw7G021050 Rw7G022310 Rw7G030300 Rw7G030310 Rw7G030320 Rw7G030330 Rw7G030340 Rw7G030350 Rw7G030360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 300
AccB1I GGYRCC 1 cut(s) 197
AccB7I CCANNNNNTGG 1 cut(s) 340
AccI GTMKAC 1 cut(s) 545
AciI CCGC 1 cut(s) 582
AclWI GGATC 1 cut(s) 479
AcsI RAATTY 2 cut(s) 41, 421
AfaI GTAC 2 cut(s) 332, 562
AfiI CCNNNNNNNGG 3 cut(s) 270, 271, 340
AgsI TTSAA 3 cut(s) 421, 463, 515
AjnI CCWGG 1 cut(s) 436
AluBI AGCT 2 cut(s) 73, 494
AluI AGCT 2 cut(s) 73, 494
Alw26I GTCTC 1 cut(s) 161
AlwI GGATC 1 cut(s) 479
ApeKI GCWGC 1 cut(s) 486
ApoI RAATTY 2 cut(s) 41, 421
AspS9I GGNCC 2 cut(s) 293, 592
AvaII GGWCC 2 cut(s) 293, 592
BanI GGYRCC 1 cut(s) 197
BbvCI CCTCAGC 2 cut(s) 10, 482
BbvI GCAGC 1 cut(s) 498
BccI CCATC 1 cut(s) 209
BciT130I CCWGG 1 cut(s) 438
BclI TGATCA 1 cut(s) 67
BcoDI GTCTC 1 cut(s) 161
BisI GCNGC 1 cut(s) 487
BlsI GCNGC 1 cut(s) 488
Bme1390I CCNGG 1 cut(s) 438
Bme18I GGWCC 2 cut(s) 293, 592
BmgT120I GGNCC 2 cut(s) 293, 592
BmiI GGNNCC 2 cut(s) 199, 294
BmrFI CCNGG 1 cut(s) 438
BmrI ACTGGG 1 cut(s) 298
BmsI GCATC 1 cut(s) 298
BmuI ACTGGG 1 cut(s) 298
BpmI CTGGAG 1 cut(s) 10
Bpu10I CCTNAGC 2 cut(s) 10, 482
BsaI GGTCTC 1 cut(s) 161
BsaJI CCNNGG 2 cut(s) 334, 585
BsaWI WCCGGW 1 cut(s) 503
Bsc4I CCNNNNNNNGG 3 cut(s) 270, 271, 340
Bse1I ACTGG 1 cut(s) 293
Bse3DI GCAATG 1 cut(s) 327
BseBI CCWGG 1 cut(s) 438
BseDI CCNNGG 2 cut(s) 334, 585
BseGI GGATG 1 cut(s) 40
BseLI CCNNNNNNNGG 3 cut(s) 270, 271, 340
BseMI GCAATG 1 cut(s) 327
BseMII CTCAG 2 cut(s) 24, 496
BseNI ACTGG 1 cut(s) 293
BseXI GCAGC 1 cut(s) 498
BshNI GGYRCC 1 cut(s) 197
BsiSI CCGG 1 cut(s) 504
BslFI GGGAC 2 cut(s) 212, 306
BslI CCNNNNNNNGG 3 cut(s) 270, 271, 340
BsmAI GTCTC 1 cut(s) 161
BsmFI GGGAC 2 cut(s) 212, 306
Bso31I GGTCTC 1 cut(s) 161
Bsp143I GATC 4 cut(s) 67, 132, 471, 574
BspACI CCGC 1 cut(s) 582
BspCNI CTCAG 2 cut(s) 23, 495
BspHI TCATGA 1 cut(s) 528
BspLI GGNNCC 2 cut(s) 199, 294
BspPI GGATC 1 cut(s) 479
BspT107I GGYRCC 1 cut(s) 197
BspTNI GGTCTC 1 cut(s) 161
BsrDI GCAATG 1 cut(s) 327
BsrI ACTGG 1 cut(s) 293
BssECI CCNNGG 2 cut(s) 334, 585
BssMI GATC 4 cut(s) 67, 132, 471, 574
BssT1I CCWWGG 2 cut(s) 334, 585
Bst2UI CCWGG 1 cut(s) 438
Bst4CI ACNGT 4 cut(s) 148, 163, 412, 560
BstAPI GCANNNNNTGC 1 cut(s) 317
BstC8I GCNNGC 3 cut(s) 313, 379, 383
BstDEI CTNAG 3 cut(s) 10, 366, 482
BstF5I GGATG 1 cut(s) 40
BstKTI GATC 4 cut(s) 70, 135, 474, 577
BstMAI GTCTC 1 cut(s) 161
BstMBI GATC 4 cut(s) 67, 132, 471, 574
BstMWI GCNNNNNNNGC 2 cut(s) 317, 378
BstNI CCWGG 1 cut(s) 438
BstNSI RCATGY 1 cut(s) 385
BstSCI CCNGG 1 cut(s) 436
BstV1I GCAGC 1 cut(s) 498
BstX2I RGATCY 1 cut(s) 471
BstYI RGATCY 1 cut(s) 471
BtsCI GGATG 1 cut(s) 40
BtsI GCAGTG 1 cut(s) 315
BtsIMutI CAGTG 3 cut(s) 159, 315, 417
Cac8I GCNNGC 3 cut(s) 313, 379, 383
CciI TCATGA 1 cut(s) 528
Cfr13I GGNCC 2 cut(s) 293, 592
Csp6I GTAC 2 cut(s) 331, 561
CviAII CATG 4 cut(s) 328, 382, 520, 529
CviQI GTAC 2 cut(s) 331, 561
DdeI CTNAG 3 cut(s) 10, 366, 482
DpnI GATC 4 cut(s) 69, 134, 473, 576
DpnII GATC 4 cut(s) 67, 132, 471, 574
EciI GGCGGA 1 cut(s) 571
Eco130I CCWWGG 2 cut(s) 334, 585
Eco31I GGTCTC 1 cut(s) 161
Eco47I GGWCC 2 cut(s) 293, 592
EcoO109I RGGNCCY 1 cut(s) 293
EcoRI GAATTC 1 cut(s) 421
EcoRII CCWGG 1 cut(s) 436
EcoT14I CCWWGG 2 cut(s) 334, 585
ErhI CCWWGG 2 cut(s) 334, 585
FaeI CATG 4 cut(s) 331, 385, 523, 532
FaqI GGGAC 2 cut(s) 212, 306
FatI CATG 4 cut(s) 327, 381, 519, 528
FbaI TGATCA 1 cut(s) 67
FblI GTMKAC 1 cut(s) 545
Fnu4HI GCNGC 1 cut(s) 487
FokI GGATG 1 cut(s) 47
Fsp4HI GCNGC 1 cut(s) 487
GluI GCNGC 1 cut(s) 487
GsuI CTGGAG 1 cut(s) 10
HapII CCGG 1 cut(s) 504
Hin1II CATG 4 cut(s) 331, 385, 523, 532
HincII GTYRAC 1 cut(s) 546
HindII GTYRAC 1 cut(s) 546
HinfI GANTC 1 cut(s) 90
HpaII CCGG 1 cut(s) 504
Hpy166II GTNNAC 1 cut(s) 546
Hpy188I TCNGA 2 cut(s) 132, 452
Hpy188III TCNNGA 4 cut(s) 27, 277, 475, 529
Hpy8I GTNNAC 1 cut(s) 546
HpyAV CCTTC 2 cut(s) 249, 265
HpyCH4III ACNGT 4 cut(s) 148, 163, 412, 560
HpyCH4IV ACGT 1 cut(s) 207
HpyCH4V TGCA 4 cut(s) 55, 311, 320, 609
HpyF10VI GCNNNNNNNGC 2 cut(s) 317, 378
HpyF3I CTNAG 3 cut(s) 10, 366, 482
HpySE526I ACGT 1 cut(s) 207
Hsp92II CATG 4 cut(s) 331, 385, 523, 532
Ksp22I TGATCA 1 cut(s) 67
Kzo9I GATC 4 cut(s) 67, 132, 471, 574
LpnPI CCDG 9 cut(s) 40, 175, 243, 256, 274, 363, 423, 450, 517
Lsp1109I GCAGC 1 cut(s) 498
LweI GCATC 1 cut(s) 298
MaeII ACGT 1 cut(s) 207
MaeIII GTNAC 1 cut(s) 406
MalI GATC 4 cut(s) 69, 134, 473, 576
MboI GATC 4 cut(s) 67, 132, 471, 574
MboII GAAGA 1 cut(s) 50
MflI RGATCY 1 cut(s) 471
MluCI AATT 4 cut(s) 41, 95, 421, 497
MnlI CCTC 4 cut(s) 19, 227, 491, 525
MseI TTAA 1 cut(s) 174
MslI CAYNNNNRTG 3 cut(s) 140, 164, 320
MspI CCGG 1 cut(s) 504
MspR9I CCNGG 1 cut(s) 438
MvaI CCWGG 1 cut(s) 438
MwoI GCNNNNNNNGC 2 cut(s) 317, 378
NdeII GATC 4 cut(s) 67, 132, 471, 574
NlaIII CATG 4 cut(s) 331, 385, 523, 532
NlaIV GGNNCC 2 cut(s) 199, 294
NmuCI GTSAC 1 cut(s) 406
NspI RCATGY 1 cut(s) 385
PaeI GCATGC 1 cut(s) 385
PagI TCATGA 1 cut(s) 528
PfeI GAWTC 1 cut(s) 90
PflMI CCANNNNNTGG 1 cut(s) 340
PkrI GCNGC 1 cut(s) 488
PpuMI RGGWCCY 1 cut(s) 293
PsiI TTATAA 1 cut(s) 300
Psp5II RGGWCCY 1 cut(s) 293
Psp6I CCWGG 1 cut(s) 436
PspGI CCWGG 1 cut(s) 436
PspN4I GGNNCC 2 cut(s) 199, 294
PspPI GGNCC 2 cut(s) 293, 592
PspPPI RGGWCCY 1 cut(s) 293
PsuI RGATCY 1 cut(s) 471
RsaI GTAC 2 cut(s) 332, 562
RsaNI GTAC 2 cut(s) 331, 561
RseI CAYNNNNRTG 3 cut(s) 140, 164, 320
SalI GTCGAC 1 cut(s) 544
SaqAI TTAA 1 cut(s) 174
SatI GCNGC 1 cut(s) 487
Sau3AI GATC 4 cut(s) 67, 132, 471, 574
Sau96I GGNCC 2 cut(s) 293, 592
ScrFI CCNGG 1 cut(s) 438
SfaNI GCATC 1 cut(s) 298
SinI GGWCC 2 cut(s) 293, 592
SmiMI CAYNNNNRTG 3 cut(s) 140, 164, 320
SphI GCATGC 1 cut(s) 385
Sse9I AATT 4 cut(s) 41, 95, 421, 497
SsiI CCGC 1 cut(s) 582
StyD4I CCNGG 1 cut(s) 436
StyI CCWWGG 2 cut(s) 334, 585
TaaI ACNGT 4 cut(s) 148, 163, 412, 560
TaiI ACGT 1 cut(s) 210
TaqI TCGA 2 cut(s) 306, 545
TasI AATT 4 cut(s) 41, 95, 421, 497
TfiI GAWTC 1 cut(s) 90
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TscAI CASTG 3 cut(s) 166, 322, 417
TseFI GTSAC 1 cut(s) 406
TseI GCWGC 1 cut(s) 486
Tsp45I GTSAC 1 cut(s) 406
TspDTI ATGAA 5 cut(s) 51, 109, 182, 231, 316
TspRI CASTG 3 cut(s) 166, 322, 417
Van91I CCANNNNNTGG 1 cut(s) 340
VpaK11BI GGWCC 2 cut(s) 293, 592
XapI RAATTY 2 cut(s) 41, 421
XceI RCATGY 1 cut(s) 385
XmiI GTMKAC 1 cut(s) 545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.