Rh7DG158800

Late embryogenesis abundant protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
Physical Location & Seq
Reverse (-)
13869633 .. 13870330
698 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG158800.1

Sequence Viewer

Length: 588 bp
ATGGTAGATTTAGAGAGCCAGCTGGTAGCACCAAGCAACCTCCGCAAAGAAAGAACCAGCAACTGCTTCATCTACTGTTTGGCGGGGTTCGTGATCTTATGCTCTGCCGTCTTGGTTTTCGCAGTACTTATTCTCCATATCAAACCTCCGGAGGTCAAACTGAGATTCGTCAACGTAAAGAACCTCAACGACTCACCTTGGCCACCTTCCTTTAACACAACTTTGGCTGCGGAGATGACTGTGAAGAACCCCAACTTCGGGGTCTACGAGTTCGAGCCGAGCACGGTGAGTGTCTTGTACTGTGGAAGCAGAGTCGGGAGTTCAGTATTGGTGATGGGGGAAGCTAAAGGGAAAAAGACAGTGAAGGTGAGTTTTGGGGTTGATGTGAGGTCGAATAGGCTACCGGAAGGGCCTAATACTCTGGTCAGCGATATTGATTCCGGGATGGTAAAGCTAAGCGGCTCTGGCACGGTGAGTGGTAGGTTTACATTGTGGAAGATTATAAAAAAGAAGATGACGGGGAAGATGGATTGCACGATGACGTTGGTTGTGAAGAGTAAGACCATCGAGGGTCTAGTATGCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

195

Amino Acids

21.3

Weight (kDa)

9.46

Isoelectric Point (pI)

34.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000065)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64065
fragaria_vesca FvH4_1g02250 FvH4_4g18381 FvH4_5g03320 FvH4_5g03331 FvH4_5g03333 FvH4_5g03334 FvH4_5g03340 FvH4_5g03342 FvH4_5g03344 FvH4_5g03370 FvH4_5g03391 FvH4_5g03400 FvH4_5g03430 FvH4_5g03450 FvH4_7g30570
malus_domestica MD06G1091500.v1.1 MD06G1093100.v1.1 MD06G1093400.v1.1 MD06G1093600.v1.1 MD06G1093700.v1.1 MD06G1093800.v1.1 MD06G1094000.v1.1 MD06G1094100.v1.1 MD06G1094200.v1.1 MD06G1094300.v1.1 MD06G1094400.v1.1 MD06G1094500.v1.1 MD06G1094600.v1.1 MD07G1281600.v1.1 MD14G1113800.v1.1 MD14G1114100.v1.1 MD14G1114500.v1.1 MD14G1114600.v1.1 MD14G1114700.v1.1 MD14G1114800.v1.1 MD15G1164000.v1.1
prunus_persica Prupe.2G303300_v2.0.a1 Prupe.5G108800_v2.0.a1 Prupe.5G109700_v2.0.a1 Prupe.5G109800_v2.0.a1 Prupe.7G233300_v2.0.a1
pyrus_communis pycom01g22140 pycom02g01830 pycom03g14740 pycom06g08690 pycom06g08710 pycom06g08720 pycom06g08900 pycom06g08970 pycom06g09040 pycom06g09090 pycom06g09100 pycom06g09120 pycom06g09130 pycom06g09140
rosa_chinensis RchiOBHm_Chr1g0379411 RchiOBHm_Chr2g0087371 RchiOBHm_Chr5g0019191 RchiOBHm_Chr7g0196211 RchiOBHm_Chr7g0196241 RchiOBHm_Chr7g0196251 RchiOBHm_Chr7g0196271 RchiOBHm_Chr7g0196311 RchiOBHm_Chr7g0196321 RchiOBHm_Chr7g0196331 RchiOBHm_Chr7g0196341 RchiOBHm_Chr7g0196381 RchiOBHm_Chr7g0196391 RchiOBHm_Chr7g0196401 RchiOBHm_Chr7g0196411 RchiOBHm_Chr7g0196421 RchiOBHm_Chr7g0196431 RchiOBHm_Chr7g0196441 RchiOBHm_Chr7g0196461 RchiOBHm_Chr7g0209531 RchiOBHm_Chr7g0209541 RchiOBHm_Chr7g0209551 RchiOBHm_Chr7g0209571 RchiOBHm_Chr7g0209581 RchiOBHm_Chr7g0209591 RchiOBHm_Chr7g0211821 RchiOBHm_Chr7g0222831 RchiOBHm_Chr7g0222841 RchiOBHm_Chr7g0222851 RchiOBHm_Chr7g0222871 RchiOBHm_Chr7g0222881 RchiOBHm_Chr7g0222891 RchiOBHm_Chr7g0222901
rosa_laevigata RLG00000002015 RLG00000002016 RLG00000002017 RLG00000002018 RLG00000002019 RLG00000002020 RLG00000002021 RLG00000002023 RLG00000002024 RLG00000002963 RLG00000003114 RLG00000003115 RLG00000003117 RLG00000003119 RLG00000003121 RLG00000004013 RLG00000004015 RLG00000004016 RLG00000004017 RLG00000004018 RLG00000004019 RLG00000004020 RLG00000004021 RLG00000004022 RLG00000004023 RLG00000004024 RLG00000004025 RLG00000004026 RLG00000004027 RLG00000004029 RLG00000004030 RLG00000004032 RLG00000004033 RLG00000004034 RLG00000004035 RLG00000004037 RLG00000004038 RLG00000004043 RLG00000004044 RLG00000004046 RLG00000004047 RLG00000004048 RLG00000004050 RLG00000015860 RLG00000024213 RLG00000024219 RLG00000026400 RLG00000032427
rosa_multiflora Rmu_co8316975.1_g000001 Rmu_co8321397.1_g000001 Rmu_co8336999.1_g000001 Rmu_co8388981.1_g000001 Rmu_co8425655.1_g000002 Rmu_co8482553.1_g000001 Rmu_sc0000243.1_g000008 Rmu_sc0000243.1_g000011 Rmu_sc0000243.1_g000015 Rmu_sc0000243.1_g000019 Rmu_sc0000243.1_g000021 Rmu_sc0000243.1_g000022 Rmu_sc0000736.1_g000005 Rmu_sc0001867.1_g000001 Rmu_sc0001867.1_g000002 Rmu_sc0001867.1_g000004 Rmu_sc0001867.1_g000005 Rmu_sc0002142.1_g000002 Rmu_sc0005676.1_g000014 Rmu_sc0005993.1_g000004 Rmu_sc0005993.1_g000009 Rmu_sc0006064.1_g000004 Rmu_sc0006761.1_g000012 Rmu_sc0006761.1_g000015 Rmu_sc0007292.1_g000017 Rmu_sc0007292.1_g000022 Rmu_sc0007292.1_g000027 Rmu_sc0007292.1_g000030 Rmu_sc0008126.1_g000003 Rmu_sc0008126.1_g000004 Rmu_sc0008581.1_g000010 Rmu_sc0008581.1_g000011 Rmu_sc0008581.1_g000012 Rmu_sc0008828.1_g000008 Rmu_sc0008828.1_g000009 Rmu_sc0008884.1_g000001 Rmu_sc0008884.1_g000002 Rmu_sc0008884.1_g000007 Rmu_sc0008884.1_g000008 Rmu_sc0008884.1_g000009 Rmu_sc0009474.1_g000001 Rmu_sc0009738.1_g000002 Rmu_sc0009738.1_g000003 Rmu_sc0011534.1_g000002 Rmu_sc0011534.1_g000003 Rmu_sc0013801.1_g000001 Rmu_sc0013801.1_g000008 Rmu_sc0013801.1_g000014 Rmu_sc0013801.1_g000015 Rmu_sc0018549.1_g000001 Rmu_sc0022712.1_g000001 Rmu_sc0023035.1_g000001 Rmu_sc0030855.1_g000001 Rmu_sc0030855.1_g000002 Rmu_sc0033647.1_g000003 Rmu_sc0034421.1_g000001 Rmu_sc0038138.1_g000001
rosa_roxburghii Rroxscaffold_1G00058800 Rroxscaffold_1G00074140 Rroxscaffold_2G00153660 Rroxscaffold_3G00236440 Rroxscaffold_3G00236450 Rroxscaffold_3G00236460 Rroxscaffold_3G00236470 Rroxscaffold_3G00236480 Rroxscaffold_3G00247410 Rroxscaffold_3G00249230 Rroxscaffold_3G00249250 Rroxscaffold_3G00249260 Rroxscaffold_3G00249280 Rroxscaffold_3G00259300 Rroxscaffold_3G00259320 Rroxscaffold_3G00259330 Rroxscaffold_3G00259340 Rroxscaffold_3G00259360 Rroxscaffold_3G00259370 Rroxscaffold_3G00259380 Rroxscaffold_3G00259390 Rroxscaffold_3G00259400 Rroxscaffold_3G00259440 Rroxscaffold_3G00259450 Rroxscaffold_3G00259460 Rroxscaffold_3G00259470 Rroxscaffold_3G00259480 Rroxscaffold_3G00259500 Rroxscaffold_3G00259510 Rroxscaffold_3G00259530 Rroxscaffold_3G00259550 Rroxscaffold_3G00259560 Rroxscaffold_3G00259580 Rroxscaffold_3G00259590 Rroxscaffold_3G00259600 Rroxscaffold_3G00259630 Rroxscaffold_4G00280180
rosa_rugosa Rorug01G0411900 Rorug07G0032100 Rorug07G0032200 Rorug07G0032300 Rorug07G0032300 Rorug07G0032400 Rorug07G0032700 Rorug07G0032800 Rorug07G0032900 Rorug07G0033000 Rorug07G0033100 Rorug07G0033100 Rorug07G0033100 Rorug07G0033100 Rorug07G0033100 Rorug07G0033200 Rorug07G0033300 Rorug07G0033300 Rorug07G0033400 Rorug07G0033500 Rorug07G0033500 Rorug07G0033500 Rorug07G0033500 Rorug07G0114200 Rorug07G0114400.1 Rorug07G0128900
rosa_samantha Rh1CG404900 Rh1DG423100 Rh2BG027600 Rh5BG138600 Rh7AG157700 Rh7AG261600 Rh7BG159300 Rh7BG159400 Rh7BG255200 Rh7CG163400 Rh7CG163500 Rh7CG163600 Rh7CG163800 Rh7CG164000 Rh7CG164100 Rh7CG164200 Rh7CG164400 Rh7CG164500 Rh7CG164600 Rh7CG164700 Rh7CG164800 Rh7CG164900 Rh7CG165000 Rh7CG165100 Rh7CG165200 Rh7CG165300 Rh7CG165400 Rh7CG165500 Rh7CG165600 Rh7CG165800 Rh7CG165900 Rh7CG166000 Rh7CG166200 Rh7CG263800 Rh7CG264000 Rh7CG264100 Rh7CG264200 Rh7CG264300 Rh7CG264400 Rh7CG278200 Rh7CG374700 Rh7CG374800 Rh7CG375000 Rh7CG375100 Rh7CG375200 Rh7CG375300 Rh7DG158700 Rh7DG158800 Rh7DG268200
rosa_wichuraiana Rw1G037980 Rw2G002230 Rw5G012400 Rw7G013490 Rw7G013500 Rw7G013600 Rw7G013610 Rw7G013640 Rw7G013650 Rw7G013660 Rw7G013670 Rw7G013690 Rw7G013700 Rw7G013710 Rw7G013730 Rw7G013740 Rw7G013750 Rw7G013760 Rw7G013770 Rw7G013780 Rw7G013800 Rw7G020960 Rw7G020970 Rw7G020990 Rw7G021000 Rw7G021010 Rw7G021020 Rw7G021030 Rw7G021040 Rw7G021050 Rw7G022310 Rw7G030300 Rw7G030310 Rw7G030320 Rw7G030330 Rw7G030340 Rw7G030350 Rw7G030360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 503
AccI GTMKAC 1 cut(s) 264
AccIII TCCGGA 1 cut(s) 148
AciI CCGC 4 cut(s) 43, 83, 230, 459
AcoI YGGCCR 1 cut(s) 200
AfaI GTAC 2 cut(s) 126, 299
AfiI CCNNNNNNNGG 2 cut(s) 257, 258
AluBI AGCT 3 cut(s) 22, 344, 454
AluI AGCT 3 cut(s) 22, 344, 454
Alw21I GWGCWC 1 cut(s) 284
AlwNI CAGNNNCTG 1 cut(s) 63
Aor13HI TCCGGA 1 cut(s) 148
AoxI GGCC 2 cut(s) 200, 410
ApeKI GCWGC 1 cut(s) 227
AspS9I GGNCC 1 cut(s) 410
AsuC2I CCSGG 1 cut(s) 442
AsuHPI GGTGA 5 cut(s) 186, 298, 343, 379, 484
BalI TGGCCA 1 cut(s) 202
Bbv12I GWGCWC 1 cut(s) 284
BbvI GCAGC 1 cut(s) 214
BccI CCATC 4 cut(s) 328, 439, 520, 572
BceAI ACGGC 1 cut(s) 92
BcnI CCSGG 1 cut(s) 442
BfaI CTAG 1 cut(s) 575
BisI GCNGC 2 cut(s) 228, 460
BlpI GCTNAGC 1 cut(s) 455
BlsI GCNGC 2 cut(s) 229, 461
BmcAI AGTACT 1 cut(s) 126
Bme1390I CCNGG 1 cut(s) 442
BmgT120I GGNCC 1 cut(s) 410
BmrFI CCNGG 1 cut(s) 442
Bpu1102I GCTNAGC 1 cut(s) 455
BpuMI CCSGG 1 cut(s) 442
BsaJI CCNNGG 1 cut(s) 197
BsaWI WCCGGW 2 cut(s) 148, 403
BsaXI ACNNNNNCTCC 2 cut(s) 117, 147
Bsc4I CCNNNNNNNGG 2 cut(s) 257, 258
BseAI TCCGGA 1 cut(s) 148
BseDI CCNNGG 1 cut(s) 197
BseGI GGATG 1 cut(s) 450
BseLI CCNNNNNNNGG 2 cut(s) 257, 258
BseMII CTCAG 1 cut(s) 152
BseXI GCAGC 1 cut(s) 214
BshFI GGCC 2 cut(s) 202, 412
BsiHKAI GWGCWC 1 cut(s) 284
BsiSI CCGG 3 cut(s) 149, 404, 441
BslI CCNNNNNNNGG 2 cut(s) 257, 258
BsnI GGCC 2 cut(s) 202, 412
Bsp1286I GDGCHC 1 cut(s) 284
Bsp13I TCCGGA 1 cut(s) 148
Bsp143I GATC 1 cut(s) 93
Bsp1720I GCTNAGC 1 cut(s) 455
BspACI CCGC 4 cut(s) 43, 83, 230, 459
BspANI GGCC 2 cut(s) 202, 412
BspCNI CTCAG 1 cut(s) 153
BspEI TCCGGA 1 cut(s) 148
BssECI CCNNGG 1 cut(s) 197
BssMI GATC 1 cut(s) 93
BssT1I CCWWGG 1 cut(s) 197
Bst4CI ACNGT 6 cut(s) 77, 241, 286, 302, 361, 472
Bst6I CTCTTC 1 cut(s) 548
BstC8I GCNNGC 1 cut(s) 20
BstDEI CTNAG 2 cut(s) 161, 455
BstF5I GGATG 1 cut(s) 450
BstKTI GATC 1 cut(s) 96
BstMBI GATC 1 cut(s) 93
BstMWI GCNNNNNNNGC 2 cut(s) 42, 465
BstSCI CCNGG 1 cut(s) 440
BstV1I GCAGC 1 cut(s) 214
BsuRI GGCC 2 cut(s) 202, 412
BtsCI GGATG 1 cut(s) 450
BtsIMutI CAGTG 1 cut(s) 366
Cac8I GCNNGC 1 cut(s) 20
CaiI CAGNNNCTG 1 cut(s) 63
Cfr13I GGNCC 1 cut(s) 410
Csp6I GTAC 2 cut(s) 125, 298
CviQI GTAC 2 cut(s) 125, 298
DdeI CTNAG 2 cut(s) 161, 455
DpnI GATC 1 cut(s) 95
DpnII GATC 1 cut(s) 93
EaeI YGGCCR 1 cut(s) 200
Eam1104I CTCTTC 1 cut(s) 548
EarI CTCTTC 1 cut(s) 548
Eco130I CCWWGG 1 cut(s) 197
EcoO109I RGGNCCY 1 cut(s) 410
EcoT14I CCWWGG 1 cut(s) 197
ErhI CCWWGG 1 cut(s) 197
FaiI YATR 4 cut(s) 100, 138, 503, 580
FauI CCCGC 1 cut(s) 76
FblI GTMKAC 1 cut(s) 264
Fnu4HI GCNGC 2 cut(s) 228, 460
FokI GGATG 1 cut(s) 457
Fsp4HI GCNGC 2 cut(s) 228, 460
FspBI CTAG 1 cut(s) 575
GluI GCNGC 2 cut(s) 228, 460
HaeIII GGCC 2 cut(s) 202, 412
HapII CCGG 3 cut(s) 149, 404, 441
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HinfI GANTC 4 cut(s) 165, 191, 312, 437
HpaII CCGG 3 cut(s) 149, 404, 441
HphI GGTGA 5 cut(s) 186, 298, 343, 379, 484
Hpy166II GTNNAC 3 cut(s) 172, 265, 486
Hpy188III TCNNGA 3 cut(s) 91, 149, 316
Hpy8I GTNNAC 3 cut(s) 172, 265, 486
HpyAV CCTTC 3 cut(s) 216, 358, 401
HpyCH4III ACNGT 6 cut(s) 77, 241, 286, 302, 361, 472
HpyCH4IV ACGT 2 cut(s) 174, 542
HpyCH4V TGCA 2 cut(s) 534, 582
HpyF10VI GCNNNNNNNGC 2 cut(s) 42, 465
HpyF3I CTNAG 2 cut(s) 161, 455
HpySE526I ACGT 2 cut(s) 174, 542
Kpn2I TCCGGA 1 cut(s) 148
Kzo9I GATC 1 cut(s) 93
LpnPI CCDG 8 cut(s) 8, 32, 70, 162, 407, 417, 450, 454
Lsp1109I GCAGC 1 cut(s) 214
MaeI CTAG 1 cut(s) 575
MaeII ACGT 2 cut(s) 174, 542
MalI GATC 1 cut(s) 95
MboI GATC 1 cut(s) 93
MboII GAAGA 5 cut(s) 256, 508, 523, 535, 565
MhlI GDGCHC 1 cut(s) 284
MlsI TGGCCA 1 cut(s) 202
MluNI TGGCCA 1 cut(s) 202
MlyI GAGTC 2 cut(s) 185, 321
MnlI CCTC 6 cut(s) 50, 145, 156, 194, 381, 562
Mox20I TGGCCA 1 cut(s) 202
MroI TCCGGA 1 cut(s) 148
MscI TGGCCA 1 cut(s) 202
MseI TTAA 1 cut(s) 213
Msp20I TGGCCA 1 cut(s) 202
MspA1I CMGCKG 1 cut(s) 22
MspI CCGG 3 cut(s) 149, 404, 441
MspR9I CCNGG 1 cut(s) 442
MwoI GCNNNNNNNGC 2 cut(s) 42, 465
NciI CCSGG 1 cut(s) 442
NdeII GATC 1 cut(s) 93
NmeAIII GCCGAG 1 cut(s) 303
PcsI WCGNNNNNNNCGW 1 cut(s) 264
PfeI GAWTC 2 cut(s) 165, 437
PfoI TCCNGGA 1 cut(s) 440
PkrI GCNGC 2 cut(s) 229, 461
PleI GAGTC 2 cut(s) 185, 320
PpsI GAGTC 2 cut(s) 185, 320
PsiI TTATAA 1 cut(s) 503
PspPI GGNCC 1 cut(s) 410
PstNI CAGNNNCTG 1 cut(s) 63
PvuII CAGCTG 1 cut(s) 22
RsaI GTAC 2 cut(s) 126, 299
RsaNI GTAC 2 cut(s) 125, 298
SaqAI TTAA 1 cut(s) 213
SatI GCNGC 2 cut(s) 228, 460
Sau3AI GATC 1 cut(s) 93
Sau96I GGNCC 1 cut(s) 410
ScaI AGTACT 1 cut(s) 126
SchI GAGTC 2 cut(s) 185, 321
ScrFI CCNGG 1 cut(s) 442
SduI GDGCHC 1 cut(s) 284
SsiI CCGC 4 cut(s) 43, 83, 230, 459
SspMI CTAG 1 cut(s) 575
StyD4I CCNGG 1 cut(s) 440
StyI CCWWGG 1 cut(s) 197
TaaI ACNGT 6 cut(s) 77, 241, 286, 302, 361, 472
TaiI ACGT 2 cut(s) 177, 545
TaqI TCGA 3 cut(s) 273, 392, 567
TatI WGTACW 2 cut(s) 124, 297
TauI GCSGC 1 cut(s) 462
TfiI GAWTC 2 cut(s) 165, 437
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TscAI CASTG 1 cut(s) 366
TseI GCWGC 1 cut(s) 227
TspDTI ATGAA 1 cut(s) 58
TspRI CASTG 1 cut(s) 366
XmiI GTMKAC 1 cut(s) 264
XspI CTAG 1 cut(s) 575
ZrmI AGTACT 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.