RLG00000004022

Late embryogenesis abundant protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
55335143 .. 55335786
644 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004022

Sequence Viewer

Length: 555 bp
ATGGCTGAGAAGAACCAACAGATGTTTGCATCAGCAAATGGCTACTCCAGAAAGGAAGAAGAATATGCCACCTTGCAAATCCAAAGATGTGCTCAAACGCCAAAAGAGAATCAAATTGGCTATGTATACTGGTGGTTTCATTGTGTTTCAGAACTTTCAGATCATAGTGATGACCACCTTCGTTTGACACAACCTTCACAACCCAAATCAGGGTCAAGTACACAAAACGGGGGACCCTATAAGTTCGATGCAAGCATTGCAACGTTCATGTACCAAGGCGTGGCTGTGGGGCAAGTTAGTATTCCTAAGAGCAAGGCTGGCATGCGTTCCACCAAAAAGATTGATGTCACAGTGAGTTTGAATTCCAATGGATTGCCAAGCTCAACTCTTGGAAGTGATTTGAATGGTGGGATCTTGACCCTCGGCAGCCAAGCTAAATTGACTGGAAAGGTTGAACTCATGTTCATCATGAAGAAAAAGAAGTTGGCTAATGTGGACTGTACCATAGCAGTTGATCTATCCTCAGAGGCAGTCCAAACTTTACAATGCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

185

Amino Acids

20.09

Weight (kDa)

8.83

Isoelectric Point (pI)

29.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000065)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64065
fragaria_vesca FvH4_1g02250 FvH4_4g18381 FvH4_5g03320 FvH4_5g03331 FvH4_5g03333 FvH4_5g03334 FvH4_5g03340 FvH4_5g03342 FvH4_5g03344 FvH4_5g03370 FvH4_5g03391 FvH4_5g03400 FvH4_5g03430 FvH4_5g03450 FvH4_7g30570
malus_domestica MD06G1091500.v1.1 MD06G1093100.v1.1 MD06G1093400.v1.1 MD06G1093600.v1.1 MD06G1093700.v1.1 MD06G1093800.v1.1 MD06G1094000.v1.1 MD06G1094100.v1.1 MD06G1094200.v1.1 MD06G1094300.v1.1 MD06G1094400.v1.1 MD06G1094500.v1.1 MD06G1094600.v1.1 MD07G1281600.v1.1 MD14G1113800.v1.1 MD14G1114100.v1.1 MD14G1114500.v1.1 MD14G1114600.v1.1 MD14G1114700.v1.1 MD14G1114800.v1.1 MD15G1164000.v1.1
prunus_persica Prupe.2G303300_v2.0.a1 Prupe.5G108800_v2.0.a1 Prupe.5G109700_v2.0.a1 Prupe.5G109800_v2.0.a1 Prupe.7G233300_v2.0.a1
pyrus_communis pycom01g22140 pycom02g01830 pycom03g14740 pycom06g08690 pycom06g08710 pycom06g08720 pycom06g08900 pycom06g08970 pycom06g09040 pycom06g09090 pycom06g09100 pycom06g09120 pycom06g09130 pycom06g09140
rosa_chinensis RchiOBHm_Chr1g0379411 RchiOBHm_Chr2g0087371 RchiOBHm_Chr5g0019191 RchiOBHm_Chr7g0196211 RchiOBHm_Chr7g0196241 RchiOBHm_Chr7g0196251 RchiOBHm_Chr7g0196271 RchiOBHm_Chr7g0196311 RchiOBHm_Chr7g0196321 RchiOBHm_Chr7g0196331 RchiOBHm_Chr7g0196341 RchiOBHm_Chr7g0196381 RchiOBHm_Chr7g0196391 RchiOBHm_Chr7g0196401 RchiOBHm_Chr7g0196411 RchiOBHm_Chr7g0196421 RchiOBHm_Chr7g0196431 RchiOBHm_Chr7g0196441 RchiOBHm_Chr7g0196461 RchiOBHm_Chr7g0209531 RchiOBHm_Chr7g0209541 RchiOBHm_Chr7g0209551 RchiOBHm_Chr7g0209571 RchiOBHm_Chr7g0209581 RchiOBHm_Chr7g0209591 RchiOBHm_Chr7g0211821 RchiOBHm_Chr7g0222831 RchiOBHm_Chr7g0222841 RchiOBHm_Chr7g0222851 RchiOBHm_Chr7g0222871 RchiOBHm_Chr7g0222881 RchiOBHm_Chr7g0222891 RchiOBHm_Chr7g0222901
rosa_laevigata RLG00000002015 RLG00000002016 RLG00000002017 RLG00000002018 RLG00000002019 RLG00000002020 RLG00000002021 RLG00000002023 RLG00000002024 RLG00000002963 RLG00000003114 RLG00000003115 RLG00000003117 RLG00000003119 RLG00000003121 RLG00000004013 RLG00000004015 RLG00000004016 RLG00000004017 RLG00000004018 RLG00000004019 RLG00000004020 RLG00000004021 RLG00000004022 RLG00000004023 RLG00000004024 RLG00000004025 RLG00000004026 RLG00000004027 RLG00000004029 RLG00000004030 RLG00000004032 RLG00000004033 RLG00000004034 RLG00000004035 RLG00000004037 RLG00000004038 RLG00000004043 RLG00000004044 RLG00000004046 RLG00000004047 RLG00000004048 RLG00000004050 RLG00000015860 RLG00000024213 RLG00000024219 RLG00000026400 RLG00000032427
rosa_multiflora Rmu_co8316975.1_g000001 Rmu_co8321397.1_g000001 Rmu_co8336999.1_g000001 Rmu_co8388981.1_g000001 Rmu_co8425655.1_g000002 Rmu_co8482553.1_g000001 Rmu_sc0000243.1_g000008 Rmu_sc0000243.1_g000011 Rmu_sc0000243.1_g000015 Rmu_sc0000243.1_g000019 Rmu_sc0000243.1_g000021 Rmu_sc0000243.1_g000022 Rmu_sc0000736.1_g000005 Rmu_sc0001867.1_g000001 Rmu_sc0001867.1_g000002 Rmu_sc0001867.1_g000004 Rmu_sc0001867.1_g000005 Rmu_sc0002142.1_g000002 Rmu_sc0005676.1_g000014 Rmu_sc0005993.1_g000004 Rmu_sc0005993.1_g000009 Rmu_sc0006064.1_g000004 Rmu_sc0006761.1_g000012 Rmu_sc0006761.1_g000015 Rmu_sc0007292.1_g000017 Rmu_sc0007292.1_g000022 Rmu_sc0007292.1_g000027 Rmu_sc0007292.1_g000030 Rmu_sc0008126.1_g000003 Rmu_sc0008126.1_g000004 Rmu_sc0008581.1_g000010 Rmu_sc0008581.1_g000011 Rmu_sc0008581.1_g000012 Rmu_sc0008828.1_g000008 Rmu_sc0008828.1_g000009 Rmu_sc0008884.1_g000001 Rmu_sc0008884.1_g000002 Rmu_sc0008884.1_g000007 Rmu_sc0008884.1_g000008 Rmu_sc0008884.1_g000009 Rmu_sc0009474.1_g000001 Rmu_sc0009738.1_g000002 Rmu_sc0009738.1_g000003 Rmu_sc0011534.1_g000002 Rmu_sc0011534.1_g000003 Rmu_sc0013801.1_g000001 Rmu_sc0013801.1_g000008 Rmu_sc0013801.1_g000014 Rmu_sc0013801.1_g000015 Rmu_sc0018549.1_g000001 Rmu_sc0022712.1_g000001 Rmu_sc0023035.1_g000001 Rmu_sc0030855.1_g000001 Rmu_sc0030855.1_g000002 Rmu_sc0033647.1_g000003 Rmu_sc0034421.1_g000001 Rmu_sc0038138.1_g000001
rosa_roxburghii Rroxscaffold_1G00058800 Rroxscaffold_1G00074140 Rroxscaffold_2G00153660 Rroxscaffold_3G00236440 Rroxscaffold_3G00236450 Rroxscaffold_3G00236460 Rroxscaffold_3G00236470 Rroxscaffold_3G00236480 Rroxscaffold_3G00247410 Rroxscaffold_3G00249230 Rroxscaffold_3G00249250 Rroxscaffold_3G00249260 Rroxscaffold_3G00249280 Rroxscaffold_3G00259300 Rroxscaffold_3G00259320 Rroxscaffold_3G00259330 Rroxscaffold_3G00259340 Rroxscaffold_3G00259360 Rroxscaffold_3G00259370 Rroxscaffold_3G00259380 Rroxscaffold_3G00259390 Rroxscaffold_3G00259400 Rroxscaffold_3G00259440 Rroxscaffold_3G00259450 Rroxscaffold_3G00259460 Rroxscaffold_3G00259470 Rroxscaffold_3G00259480 Rroxscaffold_3G00259500 Rroxscaffold_3G00259510 Rroxscaffold_3G00259530 Rroxscaffold_3G00259550 Rroxscaffold_3G00259560 Rroxscaffold_3G00259580 Rroxscaffold_3G00259590 Rroxscaffold_3G00259600 Rroxscaffold_3G00259630 Rroxscaffold_4G00280180
rosa_rugosa Rorug01G0411900 Rorug07G0032100 Rorug07G0032200 Rorug07G0032300 Rorug07G0032300 Rorug07G0032400 Rorug07G0032700 Rorug07G0032800 Rorug07G0032900 Rorug07G0033000 Rorug07G0033100 Rorug07G0033100 Rorug07G0033100 Rorug07G0033100 Rorug07G0033100 Rorug07G0033200 Rorug07G0033300 Rorug07G0033300 Rorug07G0033400 Rorug07G0033500 Rorug07G0033500 Rorug07G0033500 Rorug07G0033500 Rorug07G0114200 Rorug07G0114400.1 Rorug07G0128900
rosa_samantha Rh1CG404900 Rh1DG423100 Rh2BG027600 Rh5BG138600 Rh7AG157700 Rh7AG261600 Rh7BG159300 Rh7BG159400 Rh7BG255200 Rh7CG163400 Rh7CG163500 Rh7CG163600 Rh7CG163800 Rh7CG164000 Rh7CG164100 Rh7CG164200 Rh7CG164400 Rh7CG164500 Rh7CG164600 Rh7CG164700 Rh7CG164800 Rh7CG164900 Rh7CG165000 Rh7CG165100 Rh7CG165200 Rh7CG165300 Rh7CG165400 Rh7CG165500 Rh7CG165600 Rh7CG165800 Rh7CG165900 Rh7CG166000 Rh7CG166200 Rh7CG263800 Rh7CG264000 Rh7CG264100 Rh7CG264200 Rh7CG264300 Rh7CG264400 Rh7CG278200 Rh7CG374700 Rh7CG374800 Rh7CG375000 Rh7CG375100 Rh7CG375200 Rh7CG375300 Rh7DG158700 Rh7DG158800 Rh7DG268200
rosa_wichuraiana Rw1G037980 Rw2G002230 Rw5G012400 Rw7G013490 Rw7G013500 Rw7G013600 Rw7G013610 Rw7G013640 Rw7G013650 Rw7G013660 Rw7G013670 Rw7G013690 Rw7G013700 Rw7G013710 Rw7G013730 Rw7G013740 Rw7G013750 Rw7G013760 Rw7G013770 Rw7G013780 Rw7G013800 Rw7G020960 Rw7G020970 Rw7G020990 Rw7G021000 Rw7G021010 Rw7G021020 Rw7G021030 Rw7G021040 Rw7G021050 Rw7G022310 Rw7G030300 Rw7G030310 Rw7G030320 Rw7G030330 Rw7G030340 Rw7G030350 Rw7G030360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 280
AccI GTMKAC 1 cut(s) 126
AclI AACGTT 1 cut(s) 263
AclWI GGATC 1 cut(s) 419
AcsI RAATTY 1 cut(s) 361
AfaI GTAC 3 cut(s) 220, 272, 502
AfiI CCNNNNNNNGG 3 cut(s) 209, 210, 280
AgsI TTSAA 3 cut(s) 361, 403, 455
AjuI GAANNNNNNNTTGG 2 cut(s) 467, 499
AluBI AGCT 2 cut(s) 381, 434
AluI AGCT 2 cut(s) 381, 434
Alw21I GWGCWC 1 cut(s) 94
AlwI GGATC 1 cut(s) 419
ApeKI GCWGC 1 cut(s) 426
ApoI RAATTY 1 cut(s) 361
AspS9I GGNCC 1 cut(s) 233
AvaII GGWCC 1 cut(s) 233
Bbv12I GWGCWC 1 cut(s) 94
BbvI GCAGC 1 cut(s) 438
BisI GCNGC 1 cut(s) 427
BlsI GCNGC 1 cut(s) 428
Bme18I GGWCC 1 cut(s) 233
BmgT120I GGNCC 1 cut(s) 233
BmiI GGNNCC 2 cut(s) 234, 235
BmsI GCATC 2 cut(s) 38, 238
BpmI CTGGAG 1 cut(s) 31
BsaJI CCNNGG 2 cut(s) 274, 421
Bsc4I CCNNNNNNNGG 3 cut(s) 209, 210, 280
Bse1I ACTGG 2 cut(s) 134, 448
Bse3DI GCAATG 1 cut(s) 255
BseDI CCNNGG 2 cut(s) 274, 421
BseLI CCNNNNNNNGG 3 cut(s) 209, 210, 280
BseMI GCAATG 1 cut(s) 255
BseMII CTCAG 1 cut(s) 537
BseNI ACTGG 2 cut(s) 134, 448
BseXI GCAGC 1 cut(s) 438
BsiHKAI GWGCWC 1 cut(s) 94
BslFI GGGAC 1 cut(s) 246
BslI CCNNNNNNNGG 3 cut(s) 209, 210, 280
BsmFI GGGAC 1 cut(s) 246
Bsp1286I GDGCHC 1 cut(s) 94
Bsp143I GATC 3 cut(s) 160, 411, 514
BspCNI CTCAG 1 cut(s) 536
BspHI TCATGA 1 cut(s) 468
BspLI GGNNCC 2 cut(s) 234, 235
BspPI GGATC 1 cut(s) 419
BsrDI GCAATG 1 cut(s) 255
BsrI ACTGG 2 cut(s) 134, 448
BssECI CCNNGG 2 cut(s) 274, 421
BssMI GATC 3 cut(s) 160, 411, 514
BssNAI GTATAC 1 cut(s) 127
BssT1I CCWWGG 1 cut(s) 274
Bst1107I GTATAC 1 cut(s) 127
Bst4CI ACNGT 2 cut(s) 352, 500
BstAPI GCANNNNNTGC 1 cut(s) 257
BstC8I GCNNGC 3 cut(s) 253, 319, 323
BstDEI CTNAG 3 cut(s) 6, 306, 523
BstKTI GATC 3 cut(s) 163, 414, 517
BstMBI GATC 3 cut(s) 160, 411, 514
BstMWI GCNNNNNNNGC 2 cut(s) 257, 318
BstNSI RCATGY 1 cut(s) 325
BstV1I GCAGC 1 cut(s) 438
BstX2I RGATCY 1 cut(s) 411
BstYI RGATCY 1 cut(s) 411
BstZ17I GTATAC 1 cut(s) 127
BtsIMutI CAGTG 1 cut(s) 357
Cac8I GCNNGC 3 cut(s) 253, 319, 323
CciI TCATGA 1 cut(s) 468
Cfr13I GGNCC 1 cut(s) 233
Csp6I GTAC 3 cut(s) 219, 271, 501
CviAII CATG 4 cut(s) 268, 322, 460, 469
CviJI RGCY 9 cut(s) 5, 42, 120, 284, 317, 381, 429, 434, 488
CviKI_1 RGCY 9 cut(s) 5, 42, 120, 284, 317, 381, 429, 434, 488
CviQI GTAC 3 cut(s) 219, 271, 501
DdeI CTNAG 3 cut(s) 6, 306, 523
DpnI GATC 3 cut(s) 162, 413, 516
DpnII GATC 3 cut(s) 160, 411, 514
Eco130I CCWWGG 1 cut(s) 274
Eco47I GGWCC 1 cut(s) 233
EcoO109I RGGNCCY 1 cut(s) 233
EcoRI GAATTC 1 cut(s) 361
EcoT14I CCWWGG 1 cut(s) 274
ErhI CCWWGG 1 cut(s) 274
FaeI CATG 4 cut(s) 271, 325, 463, 472
FaqI GGGAC 1 cut(s) 246
FatI CATG 4 cut(s) 267, 321, 459, 468
FblI GTMKAC 1 cut(s) 126
Fnu4HI GCNGC 1 cut(s) 427
Fsp4HI GCNGC 1 cut(s) 427
GluI GCNGC 1 cut(s) 427
GsuI CTGGAG 1 cut(s) 31
Hin1II CATG 4 cut(s) 271, 325, 463, 472
HinfI GANTC 1 cut(s) 109
Hpy166II GTNNAC 3 cut(s) 127, 221, 496
Hpy188I TCNGA 3 cut(s) 151, 160, 526
Hpy188III TCNNGA 3 cut(s) 48, 415, 469
Hpy8I GTNNAC 3 cut(s) 127, 221, 496
HpyAV CCTTC 2 cut(s) 188, 204
HpyCH4III ACNGT 2 cut(s) 352, 500
HpyCH4IV ACGT 1 cut(s) 263
HpyCH4V TGCA 5 cut(s) 29, 76, 251, 260, 549
HpyF10VI GCNNNNNNNGC 2 cut(s) 257, 318
HpyF3I CTNAG 3 cut(s) 6, 306, 523
HpySE526I ACGT 1 cut(s) 263
Hsp92II CATG 4 cut(s) 271, 325, 463, 472
KflI GGGWCCC 1 cut(s) 233
Kzo9I GATC 3 cut(s) 160, 411, 514
LpnPI CCDG 5 cut(s) 61, 115, 195, 303, 429
Lsp1109I GCAGC 1 cut(s) 438
LweI GCATC 2 cut(s) 38, 238
MaeII ACGT 1 cut(s) 263
MaeIII GTNAC 1 cut(s) 346
MalI GATC 3 cut(s) 162, 413, 516
MboI GATC 3 cut(s) 160, 411, 514
MboII GAAGA 4 cut(s) 22, 68, 71, 484
MflI RGATCY 1 cut(s) 411
MhlI GDGCHC 1 cut(s) 94
MluCI AATT 3 cut(s) 114, 361, 437
MnlI CCTC 3 cut(s) 431, 520, 532
MslI CAYNNNNRTG 1 cut(s) 168
MwoI GCNNNNNNNGC 2 cut(s) 257, 318
NdeII GATC 3 cut(s) 160, 411, 514
NlaIII CATG 4 cut(s) 271, 325, 463, 472
NlaIV GGNNCC 2 cut(s) 234, 235
NmeAIII GCCGAG 1 cut(s) 402
NmuCI GTSAC 1 cut(s) 346
NspI RCATGY 1 cut(s) 325
PaeI GCATGC 1 cut(s) 325
PagI TCATGA 1 cut(s) 468
PfeI GAWTC 1 cut(s) 109
PflMI CCANNNNNTGG 1 cut(s) 280
PkrI GCNGC 1 cut(s) 428
PpuMI RGGWCCY 1 cut(s) 233
Psp1406I AACGTT 1 cut(s) 263
Psp5II RGGWCCY 1 cut(s) 233
PspN4I GGNNCC 2 cut(s) 234, 235
PspPI GGNCC 1 cut(s) 233
PspPPI RGGWCCY 1 cut(s) 233
PsuI RGATCY 1 cut(s) 411
RsaI GTAC 3 cut(s) 220, 272, 502
RsaNI GTAC 3 cut(s) 219, 271, 501
RseI CAYNNNNRTG 1 cut(s) 168
SatI GCNGC 1 cut(s) 427
Sau3AI GATC 3 cut(s) 160, 411, 514
Sau96I GGNCC 1 cut(s) 233
SduI GDGCHC 1 cut(s) 94
SetI ASST 7 cut(s) 74, 180, 196, 266, 383, 436, 453
SfaNI GCATC 2 cut(s) 38, 238
SinI GGWCC 1 cut(s) 233
SmiMI CAYNNNNRTG 1 cut(s) 168
SphI GCATGC 1 cut(s) 325
Sse9I AATT 3 cut(s) 114, 361, 437
StyI CCWWGG 1 cut(s) 274
TaaI ACNGT 2 cut(s) 352, 500
TaiI ACGT 1 cut(s) 266
TaqI TCGA 1 cut(s) 246
TasI AATT 3 cut(s) 114, 361, 437
TatI WGTACW 1 cut(s) 218
TfiI GAWTC 1 cut(s) 109
TscAI CASTG 1 cut(s) 357
TseFI GTSAC 1 cut(s) 346
TseI GCWGC 1 cut(s) 426
Tsp45I GTSAC 1 cut(s) 346
TspDTI ATGAA 4 cut(s) 128, 256, 454, 485
TspRI CASTG 1 cut(s) 357
Van91I CCANNNNNTGG 1 cut(s) 280
VpaK11BI GGWCC 1 cut(s) 233
XapI RAATTY 1 cut(s) 361
XceI RCATGY 1 cut(s) 325
XmiI GTMKAC 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.