Rmu_sc0011534.1_g000003

Late embryogenesis abundant protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011534.1
Physical Location & Seq
Forward (+)
2504 .. 3139
636 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011534.1_g000003.1.cds

Sequence Viewer

Length: 636 bp
atgtctgagaataccaaccaggcttatcctttggcccctgcaaatggttacacaagaagtgatggagaatctttggtatccgaagatgagctgaaacgccaaaaaagaatgaaattgtttatgtacattggtatcttcattgtctttcaaatcatagtgatgactgtatttggtcttactgtgatgaaagtgaagacccctaaggtaagatggggccaaatcaatgtcaaaagcttcaactctgttcccacaacaccttcatttgacacaacctttaccacccagataagggtgaagaacacaaactggggtccttacaagtttgatgcaagcactgcaacattcatgtaccaaggtgtggcagtggggcaagtatctattcccaagagcaaggctggaatgcgttccaccaagaagatcaatgtcgcagtgagtttgaatactgatggaattccaagtagttctacccttggtagtgaattgaacagcgagatccttactctgaccagccaagctaaattgaccggaaaggtagaattgatgctcatcatgaagaagaagaagtctgccaatatggactgcaccatagcatttgatctttccacaaagatggttaaaagcttgcaatgcaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

211

Amino Acids

23.35

Weight (kDa)

9.85

Isoelectric Point (pI)

32.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000065)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64065
fragaria_vesca FvH4_1g02250 FvH4_4g18381 FvH4_5g03320 FvH4_5g03331 FvH4_5g03333 FvH4_5g03334 FvH4_5g03340 FvH4_5g03342 FvH4_5g03344 FvH4_5g03370 FvH4_5g03391 FvH4_5g03400 FvH4_5g03430 FvH4_5g03450 FvH4_7g30570
malus_domestica MD06G1091500.v1.1 MD06G1093100.v1.1 MD06G1093400.v1.1 MD06G1093600.v1.1 MD06G1093700.v1.1 MD06G1093800.v1.1 MD06G1094000.v1.1 MD06G1094100.v1.1 MD06G1094200.v1.1 MD06G1094300.v1.1 MD06G1094400.v1.1 MD06G1094500.v1.1 MD06G1094600.v1.1 MD07G1281600.v1.1 MD14G1113800.v1.1 MD14G1114100.v1.1 MD14G1114500.v1.1 MD14G1114600.v1.1 MD14G1114700.v1.1 MD14G1114800.v1.1 MD15G1164000.v1.1
prunus_persica Prupe.2G303300_v2.0.a1 Prupe.5G108800_v2.0.a1 Prupe.5G109700_v2.0.a1 Prupe.5G109800_v2.0.a1 Prupe.7G233300_v2.0.a1
pyrus_communis pycom01g22140 pycom02g01830 pycom03g14740 pycom06g08690 pycom06g08710 pycom06g08720 pycom06g08900 pycom06g08970 pycom06g09040 pycom06g09090 pycom06g09100 pycom06g09120 pycom06g09130 pycom06g09140
rosa_chinensis RchiOBHm_Chr1g0379411 RchiOBHm_Chr2g0087371 RchiOBHm_Chr5g0019191 RchiOBHm_Chr7g0196211 RchiOBHm_Chr7g0196241 RchiOBHm_Chr7g0196251 RchiOBHm_Chr7g0196271 RchiOBHm_Chr7g0196311 RchiOBHm_Chr7g0196321 RchiOBHm_Chr7g0196331 RchiOBHm_Chr7g0196341 RchiOBHm_Chr7g0196381 RchiOBHm_Chr7g0196391 RchiOBHm_Chr7g0196401 RchiOBHm_Chr7g0196411 RchiOBHm_Chr7g0196421 RchiOBHm_Chr7g0196431 RchiOBHm_Chr7g0196441 RchiOBHm_Chr7g0196461 RchiOBHm_Chr7g0209531 RchiOBHm_Chr7g0209541 RchiOBHm_Chr7g0209551 RchiOBHm_Chr7g0209571 RchiOBHm_Chr7g0209581 RchiOBHm_Chr7g0209591 RchiOBHm_Chr7g0211821 RchiOBHm_Chr7g0222831 RchiOBHm_Chr7g0222841 RchiOBHm_Chr7g0222851 RchiOBHm_Chr7g0222871 RchiOBHm_Chr7g0222881 RchiOBHm_Chr7g0222891 RchiOBHm_Chr7g0222901
rosa_laevigata RLG00000002015 RLG00000002016 RLG00000002017 RLG00000002018 RLG00000002019 RLG00000002020 RLG00000002021 RLG00000002023 RLG00000002024 RLG00000002963 RLG00000003114 RLG00000003115 RLG00000003117 RLG00000003119 RLG00000003121 RLG00000004013 RLG00000004015 RLG00000004016 RLG00000004017 RLG00000004018 RLG00000004019 RLG00000004020 RLG00000004021 RLG00000004022 RLG00000004023 RLG00000004024 RLG00000004025 RLG00000004026 RLG00000004027 RLG00000004029 RLG00000004030 RLG00000004032 RLG00000004033 RLG00000004034 RLG00000004035 RLG00000004037 RLG00000004038 RLG00000004043 RLG00000004044 RLG00000004046 RLG00000004047 RLG00000004048 RLG00000004050 RLG00000015860 RLG00000024213 RLG00000024219 RLG00000026400 RLG00000032427
rosa_multiflora Rmu_co8316975.1_g000001 Rmu_co8321397.1_g000001 Rmu_co8336999.1_g000001 Rmu_co8388981.1_g000001 Rmu_co8425655.1_g000002 Rmu_co8482553.1_g000001 Rmu_sc0000243.1_g000008 Rmu_sc0000243.1_g000011 Rmu_sc0000243.1_g000015 Rmu_sc0000243.1_g000019 Rmu_sc0000243.1_g000021 Rmu_sc0000243.1_g000022 Rmu_sc0000736.1_g000005 Rmu_sc0001867.1_g000001 Rmu_sc0001867.1_g000002 Rmu_sc0001867.1_g000004 Rmu_sc0001867.1_g000005 Rmu_sc0002142.1_g000002 Rmu_sc0005676.1_g000014 Rmu_sc0005993.1_g000004 Rmu_sc0005993.1_g000009 Rmu_sc0006064.1_g000004 Rmu_sc0006761.1_g000012 Rmu_sc0006761.1_g000015 Rmu_sc0007292.1_g000017 Rmu_sc0007292.1_g000022 Rmu_sc0007292.1_g000027 Rmu_sc0007292.1_g000030 Rmu_sc0008126.1_g000003 Rmu_sc0008126.1_g000004 Rmu_sc0008581.1_g000010 Rmu_sc0008581.1_g000011 Rmu_sc0008581.1_g000012 Rmu_sc0008828.1_g000008 Rmu_sc0008828.1_g000009 Rmu_sc0008884.1_g000001 Rmu_sc0008884.1_g000002 Rmu_sc0008884.1_g000007 Rmu_sc0008884.1_g000008 Rmu_sc0008884.1_g000009 Rmu_sc0009474.1_g000001 Rmu_sc0009738.1_g000002 Rmu_sc0009738.1_g000003 Rmu_sc0011534.1_g000002 Rmu_sc0011534.1_g000003 Rmu_sc0013801.1_g000001 Rmu_sc0013801.1_g000008 Rmu_sc0013801.1_g000014 Rmu_sc0013801.1_g000015 Rmu_sc0018549.1_g000001 Rmu_sc0022712.1_g000001 Rmu_sc0023035.1_g000001 Rmu_sc0030855.1_g000001 Rmu_sc0030855.1_g000002 Rmu_sc0033647.1_g000003 Rmu_sc0034421.1_g000001 Rmu_sc0038138.1_g000001
rosa_roxburghii Rroxscaffold_1G00058800 Rroxscaffold_1G00074140 Rroxscaffold_2G00153660 Rroxscaffold_3G00236440 Rroxscaffold_3G00236450 Rroxscaffold_3G00236460 Rroxscaffold_3G00236470 Rroxscaffold_3G00236480 Rroxscaffold_3G00247410 Rroxscaffold_3G00249230 Rroxscaffold_3G00249250 Rroxscaffold_3G00249260 Rroxscaffold_3G00249280 Rroxscaffold_3G00259300 Rroxscaffold_3G00259320 Rroxscaffold_3G00259330 Rroxscaffold_3G00259340 Rroxscaffold_3G00259360 Rroxscaffold_3G00259370 Rroxscaffold_3G00259380 Rroxscaffold_3G00259390 Rroxscaffold_3G00259400 Rroxscaffold_3G00259440 Rroxscaffold_3G00259450 Rroxscaffold_3G00259460 Rroxscaffold_3G00259470 Rroxscaffold_3G00259480 Rroxscaffold_3G00259500 Rroxscaffold_3G00259510 Rroxscaffold_3G00259530 Rroxscaffold_3G00259550 Rroxscaffold_3G00259560 Rroxscaffold_3G00259580 Rroxscaffold_3G00259590 Rroxscaffold_3G00259600 Rroxscaffold_3G00259630 Rroxscaffold_4G00280180
rosa_rugosa Rorug01G0411900 Rorug07G0032100 Rorug07G0032200 Rorug07G0032300 Rorug07G0032300 Rorug07G0032400 Rorug07G0032700 Rorug07G0032800 Rorug07G0032900 Rorug07G0033000 Rorug07G0033100 Rorug07G0033100 Rorug07G0033100 Rorug07G0033100 Rorug07G0033100 Rorug07G0033200 Rorug07G0033300 Rorug07G0033300 Rorug07G0033400 Rorug07G0033500 Rorug07G0033500 Rorug07G0033500 Rorug07G0033500 Rorug07G0114200 Rorug07G0114400.1 Rorug07G0128900
rosa_samantha Rh1CG404900 Rh1DG423100 Rh2BG027600 Rh5BG138600 Rh7AG157700 Rh7AG261600 Rh7BG159300 Rh7BG159400 Rh7BG255200 Rh7CG163400 Rh7CG163500 Rh7CG163600 Rh7CG163800 Rh7CG164000 Rh7CG164100 Rh7CG164200 Rh7CG164400 Rh7CG164500 Rh7CG164600 Rh7CG164700 Rh7CG164800 Rh7CG164900 Rh7CG165000 Rh7CG165100 Rh7CG165200 Rh7CG165300 Rh7CG165400 Rh7CG165500 Rh7CG165600 Rh7CG165800 Rh7CG165900 Rh7CG166000 Rh7CG166200 Rh7CG263800 Rh7CG264000 Rh7CG264100 Rh7CG264200 Rh7CG264300 Rh7CG264400 Rh7CG278200 Rh7CG374700 Rh7CG374800 Rh7CG375000 Rh7CG375100 Rh7CG375200 Rh7CG375300 Rh7DG158700 Rh7DG158800 Rh7DG268200
rosa_wichuraiana Rw1G037980 Rw2G002230 Rw5G012400 Rw7G013490 Rw7G013500 Rw7G013600 Rw7G013610 Rw7G013640 Rw7G013650 Rw7G013660 Rw7G013670 Rw7G013690 Rw7G013700 Rw7G013710 Rw7G013730 Rw7G013740 Rw7G013750 Rw7G013760 Rw7G013770 Rw7G013780 Rw7G013800 Rw7G020960 Rw7G020970 Rw7G020990 Rw7G021000 Rw7G021010 Rw7G021020 Rw7G021030 Rw7G021040 Rw7G021050 Rw7G022310 Rw7G030300 Rw7G030310 Rw7G030320 Rw7G030330 Rw7G030340 Rw7G030350 Rw7G030360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 358
AclWI GGATC 1 cut(s) 487
AcsI RAATTY 1 cut(s) 450
AfaI GTAC 2 cut(s) 125, 350
AfiI CCNNNNNNNGG 4 cut(s) 44, 288, 289, 358
AgsI TTSAA 4 cut(s) 149, 238, 439, 484
AjnI CCWGG 1 cut(s) 18
AluBI AGCT 4 cut(s) 91, 234, 515, 621
AluI AGCT 4 cut(s) 91, 234, 515, 621
AlwI GGATC 1 cut(s) 487
AoxI GGCC 2 cut(s) 33, 214
ApoI RAATTY 1 cut(s) 450
Asp700I GAANNNNTTC 1 cut(s) 403
AspS9I GGNCC 3 cut(s) 34, 214, 311
AsuHPI GGTGA 1 cut(s) 304
AvaII GGWCC 1 cut(s) 311
AxyI CCTNAGG 1 cut(s) 201
BaeI ACNNNNGTAYC 2 cut(s) 115, 148
BbsI GAAGAC 1 cut(s) 200
BccI CCATC 4 cut(s) 56, 204, 440, 604
BciT130I CCWGG 1 cut(s) 20
BciVI GTATCC 1 cut(s) 88
BfuI GTATCC 1 cut(s) 88
Bme1390I CCNGG 1 cut(s) 20
Bme18I GGWCC 1 cut(s) 311
BmgT120I GGNCC 3 cut(s) 34, 214, 311
BmiI GGNNCC 3 cut(s) 36, 215, 312
BmrFI CCNGG 1 cut(s) 20
BmrI ACTGGG 1 cut(s) 316
BmsI GCATC 2 cut(s) 316, 531
BmuI ACTGGG 1 cut(s) 316
BpiI GAAGAC 1 cut(s) 200
BsaBI GATNNNNATC 1 cut(s) 545
BsaJI CCNNGG 2 cut(s) 352, 469
BsaWI WCCGGW 1 cut(s) 524
Bsc4I CCNNNNNNNGG 4 cut(s) 44, 288, 289, 358
Bse1I ACTGG 1 cut(s) 311
Bse21I CCTNAGG 1 cut(s) 201
Bse3DI GCAATG 1 cut(s) 632
Bse8I GATNNNNATC 1 cut(s) 545
BseBI CCWGG 1 cut(s) 20
BseDI CCNNGG 2 cut(s) 352, 469
BseJI GATNNNNATC 1 cut(s) 545
BseLI CCNNNNNNNGG 4 cut(s) 44, 288, 289, 358
BseMI GCAATG 1 cut(s) 632
BseNI ACTGG 1 cut(s) 311
BsgI GTGCAG 1 cut(s) 565
BshFI GGCC 2 cut(s) 35, 216
BsiSI CCGG 1 cut(s) 525
BslI CCNNNNNNNGG 4 cut(s) 44, 288, 289, 358
BsmI GAATGC 1 cut(s) 405
BsnI GGCC 2 cut(s) 35, 216
Bsp1407I TGTACA 1 cut(s) 123
Bsp143I GATC 3 cut(s) 417, 492, 595
BspANI GGCC 2 cut(s) 35, 216
BspHI TCATGA 1 cut(s) 549
BspLI GGNNCC 3 cut(s) 36, 215, 312
BspPI GGATC 1 cut(s) 487
BsrDI GCAATG 1 cut(s) 632
BsrGI TGTACA 1 cut(s) 123
BsrI ACTGG 1 cut(s) 311
BssECI CCNNGG 2 cut(s) 352, 469
BssMI GATC 3 cut(s) 417, 492, 595
BssT1I CCWWGG 2 cut(s) 352, 469
Bst2UI CCWGG 1 cut(s) 20
Bst4CI ACNGT 2 cut(s) 166, 181
BstAPI GCANNNNNTGC 1 cut(s) 335
BstAUI TGTACA 1 cut(s) 123
BstC8I GCNNGC 2 cut(s) 331, 623
BstDEI CTNAG 2 cut(s) 6, 201
BstKTI GATC 3 cut(s) 420, 495, 598
BstMBI GATC 3 cut(s) 417, 492, 595
BstMWI GCNNNNNNNGC 2 cut(s) 335, 627
BstNI CCWGG 1 cut(s) 20
BstSCI CCNGG 1 cut(s) 18
BstV2I GAAGAC 1 cut(s) 200
BstX2I RGATCY 1 cut(s) 492
BstXI CCANNNNNNTGG 1 cut(s) 610
BstYI RGATCY 1 cut(s) 492
Bsu36I CCTNAGG 1 cut(s) 201
BsuI GTATCC 1 cut(s) 88
BsuRI GGCC 2 cut(s) 35, 216
BtsI GCAGTG 3 cut(s) 333, 369, 435
BtsIMutI CAGTG 3 cut(s) 333, 369, 435
Cac8I GCNNGC 2 cut(s) 331, 623
CciI TCATGA 1 cut(s) 549
Cfr13I GGNCC 3 cut(s) 34, 214, 311
Csp6I GTAC 2 cut(s) 124, 349
CviAII CATG 2 cut(s) 346, 550
CviJI RGCY 9 cut(s) 23, 35, 91, 216, 234, 395, 510, 515, 621
CviKI_1 RGCY 9 cut(s) 23, 35, 91, 216, 234, 395, 510, 515, 621
CviQI GTAC 2 cut(s) 124, 349
DdeI CTNAG 2 cut(s) 6, 201
DpnI GATC 3 cut(s) 419, 494, 597
DpnII GATC 3 cut(s) 417, 492, 595
Eco130I CCWWGG 2 cut(s) 352, 469
Eco47I GGWCC 1 cut(s) 311
Eco81I CCTNAGG 1 cut(s) 201
EcoO109I RGGNCCY 1 cut(s) 311
EcoRI GAATTC 1 cut(s) 450
EcoRII CCWGG 1 cut(s) 18
EcoT14I CCWWGG 2 cut(s) 352, 469
ErhI CCWWGG 2 cut(s) 352, 469
FaeI CATG 2 cut(s) 349, 553
FaiI YATR 6 cut(s) 122, 155, 347, 551, 575, 587
FatI CATG 2 cut(s) 345, 549
HaeIII GGCC 2 cut(s) 35, 216
HapII CCGG 1 cut(s) 525
Hin1II CATG 2 cut(s) 349, 553
HindIII AAGCTT 2 cut(s) 232, 619
HinfI GANTC 1 cut(s) 68
HpaII CCGG 1 cut(s) 525
HphI GGTGA 1 cut(s) 304
Hpy188I TCNGA 3 cut(s) 7, 82, 504
Hpy188III TCNNGA 1 cut(s) 550
HpyAV CCTTC 1 cut(s) 267
HpyCH4III ACNGT 2 cut(s) 166, 181
HpyCH4V TGCA 6 cut(s) 41, 329, 338, 582, 625, 630
HpyF10VI GCNNNNNNNGC 2 cut(s) 335, 627
HpyF3I CTNAG 2 cut(s) 6, 201
Hsp92II CATG 2 cut(s) 349, 553
Kzo9I GATC 3 cut(s) 417, 492, 595
LpnPI CCDG 8 cut(s) 5, 32, 51, 292, 296, 381, 520, 538
LweI GCATC 2 cut(s) 316, 531
MaeIII GTNAC 1 cut(s) 47
MalI GATC 3 cut(s) 419, 494, 597
MboI GATC 3 cut(s) 417, 492, 595
MboII GAAGA 8 cut(s) 95, 127, 205, 307, 427, 565, 568, 571
MflI RGATCY 1 cut(s) 492
MluCI AATT 5 cut(s) 113, 450, 479, 518, 536
MroXI GAANNNNTTC 1 cut(s) 403
MseI TTAA 1 cut(s) 615
MslI CAYNNNNRTG 2 cut(s) 158, 608
MspI CCGG 1 cut(s) 525
MspR9I CCNGG 1 cut(s) 20
Mva1269I GAATGC 1 cut(s) 405
MvaI CCWGG 1 cut(s) 20
MwoI GCNNNNNNNGC 2 cut(s) 335, 627
NdeII GATC 3 cut(s) 417, 492, 595
NlaIII CATG 2 cut(s) 349, 553
NlaIV GGNNCC 3 cut(s) 36, 215, 312
PagI TCATGA 1 cut(s) 549
PctI GAATGC 1 cut(s) 405
PdmI GAANNNNTTC 1 cut(s) 403
PfeI GAWTC 1 cut(s) 68
PflMI CCANNNNNTGG 1 cut(s) 358
PpuMI RGGWCCY 1 cut(s) 311
Psp5II RGGWCCY 1 cut(s) 311
Psp6I CCWGG 1 cut(s) 18
PspGI CCWGG 1 cut(s) 18
PspN4I GGNNCC 3 cut(s) 36, 215, 312
PspPI GGNCC 3 cut(s) 34, 214, 311
PspPPI RGGWCCY 1 cut(s) 311
PsuI RGATCY 1 cut(s) 492
RsaI GTAC 2 cut(s) 125, 350
RsaNI GTAC 2 cut(s) 124, 349
RseI CAYNNNNRTG 2 cut(s) 158, 608
SaqAI TTAA 1 cut(s) 615
Sau3AI GATC 3 cut(s) 417, 492, 595
Sau96I GGNCC 3 cut(s) 34, 214, 311
ScrFI CCNGG 1 cut(s) 20
SetI ASST 9 cut(s) 93, 207, 236, 259, 275, 358, 517, 534, 623
SfaNI GCATC 2 cut(s) 316, 531
SinI GGWCC 1 cut(s) 311
SmiMI CAYNNNNRTG 2 cut(s) 158, 608
Sse9I AATT 5 cut(s) 113, 450, 479, 518, 536
StyD4I CCNGG 1 cut(s) 18
StyI CCWWGG 2 cut(s) 352, 469
TaaI ACNGT 2 cut(s) 166, 181
TasI AATT 5 cut(s) 113, 450, 479, 518, 536
TatI WGTACW 1 cut(s) 123
TfiI GAWTC 1 cut(s) 68
Tru1I TTAA 1 cut(s) 615
Tru9I TTAA 1 cut(s) 615
TscAI CASTG 3 cut(s) 340, 369, 435
TspDTI ATGAA 6 cut(s) 125, 127, 200, 249, 334, 566
TspRI CASTG 3 cut(s) 340, 369, 435
Van91I CCANNNNNTGG 1 cut(s) 358
VpaK11BI GGWCC 1 cut(s) 311
XapI RAATTY 1 cut(s) 450
XmnI GAANNNNTTC 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.