Rmu_sc0000736.1_g000005

Late embryogenesis abundant protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000736.1
Physical Location & Seq
Forward (+)
33090 .. 33638
549 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000736.1_g000005.1.cds

Sequence Viewer

Length: 549 bp
atgaaaggagggggaaacaagaagtgcctagcctatgttgctattttcatcgtgtttcaaatcatagtgatcacgatcttcgcactcaccgtgttgaagataaagggtcccaaagtcaggttccaaaccgtgactgccagtaacttcaattccagcagcccaagctctccgtctttcagcgcccatttggtgaccaaatttgctgtcaagaacacgaacttcggtcacttcaaataccccaacagcactgtctcaatcttgtatgatggccaagtaatcgggtctgctgatgtcccaagccagaaagccaaagctcgatcgacaaggagaactgacatcaacattagcattagctcggacaagttgactggaaccacaaacctcacaagcgccatcaacgctggggttgtgaacctgaccagtgagtccactttgaaggggaaggtcgaaataatgaagatcatcaagaagaacaagtctggtaaaatgagctgcaccatgtcgctcaatttgtcaaccaaggctgttgagaatttgatgtgcaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

182

Amino Acids

19.57

Weight (kDa)

10.16

Isoelectric Point (pI)

36.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000065)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64065
fragaria_vesca FvH4_1g02250 FvH4_4g18381 FvH4_5g03320 FvH4_5g03331 FvH4_5g03333 FvH4_5g03334 FvH4_5g03340 FvH4_5g03342 FvH4_5g03344 FvH4_5g03370 FvH4_5g03391 FvH4_5g03400 FvH4_5g03430 FvH4_5g03450 FvH4_7g30570
malus_domestica MD06G1091500.v1.1 MD06G1093100.v1.1 MD06G1093400.v1.1 MD06G1093600.v1.1 MD06G1093700.v1.1 MD06G1093800.v1.1 MD06G1094000.v1.1 MD06G1094100.v1.1 MD06G1094200.v1.1 MD06G1094300.v1.1 MD06G1094400.v1.1 MD06G1094500.v1.1 MD06G1094600.v1.1 MD07G1281600.v1.1 MD14G1113800.v1.1 MD14G1114100.v1.1 MD14G1114500.v1.1 MD14G1114600.v1.1 MD14G1114700.v1.1 MD14G1114800.v1.1 MD15G1164000.v1.1
prunus_persica Prupe.2G303300_v2.0.a1 Prupe.5G108800_v2.0.a1 Prupe.5G109700_v2.0.a1 Prupe.5G109800_v2.0.a1 Prupe.7G233300_v2.0.a1
pyrus_communis pycom01g22140 pycom02g01830 pycom03g14740 pycom06g08690 pycom06g08710 pycom06g08720 pycom06g08900 pycom06g08970 pycom06g09040 pycom06g09090 pycom06g09100 pycom06g09120 pycom06g09130 pycom06g09140
rosa_chinensis RchiOBHm_Chr1g0379411 RchiOBHm_Chr2g0087371 RchiOBHm_Chr5g0019191 RchiOBHm_Chr7g0196211 RchiOBHm_Chr7g0196241 RchiOBHm_Chr7g0196251 RchiOBHm_Chr7g0196271 RchiOBHm_Chr7g0196311 RchiOBHm_Chr7g0196321 RchiOBHm_Chr7g0196331 RchiOBHm_Chr7g0196341 RchiOBHm_Chr7g0196381 RchiOBHm_Chr7g0196391 RchiOBHm_Chr7g0196401 RchiOBHm_Chr7g0196411 RchiOBHm_Chr7g0196421 RchiOBHm_Chr7g0196431 RchiOBHm_Chr7g0196441 RchiOBHm_Chr7g0196461 RchiOBHm_Chr7g0209531 RchiOBHm_Chr7g0209541 RchiOBHm_Chr7g0209551 RchiOBHm_Chr7g0209571 RchiOBHm_Chr7g0209581 RchiOBHm_Chr7g0209591 RchiOBHm_Chr7g0211821 RchiOBHm_Chr7g0222831 RchiOBHm_Chr7g0222841 RchiOBHm_Chr7g0222851 RchiOBHm_Chr7g0222871 RchiOBHm_Chr7g0222881 RchiOBHm_Chr7g0222891 RchiOBHm_Chr7g0222901
rosa_laevigata RLG00000002015 RLG00000002016 RLG00000002017 RLG00000002018 RLG00000002019 RLG00000002020 RLG00000002021 RLG00000002023 RLG00000002024 RLG00000002963 RLG00000003114 RLG00000003115 RLG00000003117 RLG00000003119 RLG00000003121 RLG00000004013 RLG00000004015 RLG00000004016 RLG00000004017 RLG00000004018 RLG00000004019 RLG00000004020 RLG00000004021 RLG00000004022 RLG00000004023 RLG00000004024 RLG00000004025 RLG00000004026 RLG00000004027 RLG00000004029 RLG00000004030 RLG00000004032 RLG00000004033 RLG00000004034 RLG00000004035 RLG00000004037 RLG00000004038 RLG00000004043 RLG00000004044 RLG00000004046 RLG00000004047 RLG00000004048 RLG00000004050 RLG00000015860 RLG00000024213 RLG00000024219 RLG00000026400 RLG00000032427
rosa_multiflora Rmu_co8316975.1_g000001 Rmu_co8321397.1_g000001 Rmu_co8336999.1_g000001 Rmu_co8388981.1_g000001 Rmu_co8425655.1_g000002 Rmu_co8482553.1_g000001 Rmu_sc0000243.1_g000008 Rmu_sc0000243.1_g000011 Rmu_sc0000243.1_g000015 Rmu_sc0000243.1_g000019 Rmu_sc0000243.1_g000021 Rmu_sc0000243.1_g000022 Rmu_sc0000736.1_g000005 Rmu_sc0001867.1_g000001 Rmu_sc0001867.1_g000002 Rmu_sc0001867.1_g000004 Rmu_sc0001867.1_g000005 Rmu_sc0002142.1_g000002 Rmu_sc0005676.1_g000014 Rmu_sc0005993.1_g000004 Rmu_sc0005993.1_g000009 Rmu_sc0006064.1_g000004 Rmu_sc0006761.1_g000012 Rmu_sc0006761.1_g000015 Rmu_sc0007292.1_g000017 Rmu_sc0007292.1_g000022 Rmu_sc0007292.1_g000027 Rmu_sc0007292.1_g000030 Rmu_sc0008126.1_g000003 Rmu_sc0008126.1_g000004 Rmu_sc0008581.1_g000010 Rmu_sc0008581.1_g000011 Rmu_sc0008581.1_g000012 Rmu_sc0008828.1_g000008 Rmu_sc0008828.1_g000009 Rmu_sc0008884.1_g000001 Rmu_sc0008884.1_g000002 Rmu_sc0008884.1_g000007 Rmu_sc0008884.1_g000008 Rmu_sc0008884.1_g000009 Rmu_sc0009474.1_g000001 Rmu_sc0009738.1_g000002 Rmu_sc0009738.1_g000003 Rmu_sc0011534.1_g000002 Rmu_sc0011534.1_g000003 Rmu_sc0013801.1_g000001 Rmu_sc0013801.1_g000008 Rmu_sc0013801.1_g000014 Rmu_sc0013801.1_g000015 Rmu_sc0018549.1_g000001 Rmu_sc0022712.1_g000001 Rmu_sc0023035.1_g000001 Rmu_sc0030855.1_g000001 Rmu_sc0030855.1_g000002 Rmu_sc0033647.1_g000003 Rmu_sc0034421.1_g000001 Rmu_sc0038138.1_g000001
rosa_roxburghii Rroxscaffold_1G00058800 Rroxscaffold_1G00074140 Rroxscaffold_2G00153660 Rroxscaffold_3G00236440 Rroxscaffold_3G00236450 Rroxscaffold_3G00236460 Rroxscaffold_3G00236470 Rroxscaffold_3G00236480 Rroxscaffold_3G00247410 Rroxscaffold_3G00249230 Rroxscaffold_3G00249250 Rroxscaffold_3G00249260 Rroxscaffold_3G00249280 Rroxscaffold_3G00259300 Rroxscaffold_3G00259320 Rroxscaffold_3G00259330 Rroxscaffold_3G00259340 Rroxscaffold_3G00259360 Rroxscaffold_3G00259370 Rroxscaffold_3G00259380 Rroxscaffold_3G00259390 Rroxscaffold_3G00259400 Rroxscaffold_3G00259440 Rroxscaffold_3G00259450 Rroxscaffold_3G00259460 Rroxscaffold_3G00259470 Rroxscaffold_3G00259480 Rroxscaffold_3G00259500 Rroxscaffold_3G00259510 Rroxscaffold_3G00259530 Rroxscaffold_3G00259550 Rroxscaffold_3G00259560 Rroxscaffold_3G00259580 Rroxscaffold_3G00259590 Rroxscaffold_3G00259600 Rroxscaffold_3G00259630 Rroxscaffold_4G00280180
rosa_rugosa Rorug01G0411900 Rorug07G0032100 Rorug07G0032200 Rorug07G0032300 Rorug07G0032300 Rorug07G0032400 Rorug07G0032700 Rorug07G0032800 Rorug07G0032900 Rorug07G0033000 Rorug07G0033100 Rorug07G0033100 Rorug07G0033100 Rorug07G0033100 Rorug07G0033100 Rorug07G0033200 Rorug07G0033300 Rorug07G0033300 Rorug07G0033400 Rorug07G0033500 Rorug07G0033500 Rorug07G0033500 Rorug07G0033500 Rorug07G0114200 Rorug07G0114400.1 Rorug07G0128900
rosa_samantha Rh1CG404900 Rh1DG423100 Rh2BG027600 Rh5BG138600 Rh7AG157700 Rh7AG261600 Rh7BG159300 Rh7BG159400 Rh7BG255200 Rh7CG163400 Rh7CG163500 Rh7CG163600 Rh7CG163800 Rh7CG164000 Rh7CG164100 Rh7CG164200 Rh7CG164400 Rh7CG164500 Rh7CG164600 Rh7CG164700 Rh7CG164800 Rh7CG164900 Rh7CG165000 Rh7CG165100 Rh7CG165200 Rh7CG165300 Rh7CG165400 Rh7CG165500 Rh7CG165600 Rh7CG165800 Rh7CG165900 Rh7CG166000 Rh7CG166200 Rh7CG263800 Rh7CG264000 Rh7CG264100 Rh7CG264200 Rh7CG264300 Rh7CG264400 Rh7CG278200 Rh7CG374700 Rh7CG374800 Rh7CG375000 Rh7CG375100 Rh7CG375200 Rh7CG375300 Rh7DG158700 Rh7DG158800 Rh7DG268200
rosa_wichuraiana Rw1G037980 Rw2G002230 Rw5G012400 Rw7G013490 Rw7G013500 Rw7G013600 Rw7G013610 Rw7G013640 Rw7G013650 Rw7G013660 Rw7G013670 Rw7G013690 Rw7G013700 Rw7G013710 Rw7G013730 Rw7G013740 Rw7G013750 Rw7G013760 Rw7G013770 Rw7G013780 Rw7G013800 Rw7G020960 Rw7G020970 Rw7G020990 Rw7G021000 Rw7G021010 Rw7G021020 Rw7G021030 Rw7G021040 Rw7G021050 Rw7G022310 Rw7G030300 Rw7G030310 Rw7G030320 Rw7G030330 Rw7G030340 Rw7G030350 Rw7G030360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 424
AcoI YGGCCR 1 cut(s) 268
AcsI RAATTY 2 cut(s) 197, 532
AfiI CCNNNNNNNGG 1 cut(s) 117
AgsI TTSAA 5 cut(s) 59, 97, 148, 232, 436
AjuI GAANNNNNNNTTGG 2 cut(s) 104, 136
AluBI AGCT 4 cut(s) 165, 314, 354, 492
AluI AGCT 4 cut(s) 165, 314, 354, 492
Alw26I GTCTC 1 cut(s) 256
AoxI GGCC 1 cut(s) 268
ApeKI GCWGC 2 cut(s) 156, 492
ApoI RAATTY 2 cut(s) 197, 532
ArsI GACNNNNNNTTYG 2 cut(s) 189, 221
AspLEI GCGC 2 cut(s) 182, 392
AspS9I GGNCC 1 cut(s) 107
AsuHPI GGTGA 2 cut(s) 79, 202
AvaII GGWCC 1 cut(s) 107
BalI TGGCCA 1 cut(s) 270
BbvI GCAGC 2 cut(s) 168, 479
BccI CCATC 2 cut(s) 260, 401
BclI TGATCA 1 cut(s) 69
BcoDI GTCTC 1 cut(s) 256
BfaI CTAG 1 cut(s) 29
BfoI RGCGCY 2 cut(s) 183, 393
BisI GCNGC 2 cut(s) 157, 493
BlsI GCNGC 2 cut(s) 158, 494
Bme18I GGWCC 1 cut(s) 107
BmgT120I GGNCC 1 cut(s) 107
BmiI GGNNCC 4 cut(s) 108, 109, 122, 373
BsaBI GATNNNNATC 1 cut(s) 74
BsaJI CCNNGG 1 cut(s) 519
Bsc4I CCNNNNNNNGG 1 cut(s) 117
Bse1I ACTGG 3 cut(s) 138, 373, 420
Bse8I GATNNNNATC 1 cut(s) 74
BseDI CCNNGG 1 cut(s) 519
BseJI GATNNNNATC 1 cut(s) 74
BseLI CCNNNNNNNGG 1 cut(s) 117
BseNI ACTGG 3 cut(s) 138, 373, 420
BseXI GCAGC 2 cut(s) 168, 479
BseYI CCCAGC 1 cut(s) 401
BsgI GTGCAG 1 cut(s) 478
Bsh1285I CGRYCG 1 cut(s) 320
BshFI GGCC 1 cut(s) 270
BsiEI CGRYCG 1 cut(s) 320
BslFI GGGAC 2 cut(s) 93, 278
BslI CCNNNNNNNGG 1 cut(s) 117
BsmAI GTCTC 1 cut(s) 256
BsmFI GGGAC 2 cut(s) 93, 278
BsnI GGCC 1 cut(s) 270
Bsp143I GATC 4 cut(s) 69, 75, 317, 459
BspANI GGCC 1 cut(s) 270
BspLI GGNNCC 4 cut(s) 108, 109, 122, 373
BsrI ACTGG 3 cut(s) 138, 373, 420
BssECI CCNNGG 1 cut(s) 519
BssMI GATC 4 cut(s) 69, 75, 317, 459
BssT1I CCWWGG 1 cut(s) 519
Bst4CI ACNGT 3 cut(s) 91, 130, 250
BstEII GGTNACC 1 cut(s) 190
BstH2I RGCGCY 2 cut(s) 183, 393
BstHHI GCGC 2 cut(s) 182, 392
BstKTI GATC 4 cut(s) 72, 78, 320, 462
BstMAI GTCTC 1 cut(s) 256
BstMBI GATC 4 cut(s) 69, 75, 317, 459
BstMCI CGRYCG 1 cut(s) 320
BstMWI GCNNNNNNNGC 3 cut(s) 38, 162, 398
BstPI GGTNACC 1 cut(s) 190
BstV1I GCAGC 2 cut(s) 168, 479
BsuRI GGCC 1 cut(s) 270
BtsIMutI CAGTG 2 cut(s) 246, 427
CfoI GCGC 2 cut(s) 182, 392
Cfr13I GGNCC 1 cut(s) 107
CviAII CATG 1 cut(s) 499
DpnI GATC 4 cut(s) 71, 77, 319, 461
DpnII GATC 4 cut(s) 69, 75, 317, 459
DrdI GACNNNNNNGTC 1 cut(s) 424
DseDI GACNNNNNNGTC 1 cut(s) 424
EaeI YGGCCR 1 cut(s) 268
Eco130I CCWWGG 1 cut(s) 519
Eco47I GGWCC 1 cut(s) 107
Eco91I GGTNACC 1 cut(s) 190
EcoO109I RGGNCCY 1 cut(s) 107
EcoO65I GGTNACC 1 cut(s) 190
EcoT14I CCWWGG 1 cut(s) 519
ErhI CCWWGG 1 cut(s) 519
FaeI CATG 1 cut(s) 502
FaiI YATR 4 cut(s) 36, 65, 264, 500
FaqI GGGAC 2 cut(s) 93, 278
FatI CATG 1 cut(s) 498
FbaI TGATCA 1 cut(s) 69
Fnu4HI GCNGC 2 cut(s) 157, 493
Fsp4HI GCNGC 2 cut(s) 157, 493
FspBI CTAG 1 cut(s) 29
GlaI GCGC 2 cut(s) 181, 391
GluI GCNGC 2 cut(s) 157, 493
GsaI CCCAGC 1 cut(s) 405
HaeII RGCGCY 2 cut(s) 183, 393
HaeIII GGCC 1 cut(s) 270
HhaI GCGC 2 cut(s) 182, 392
Hin1II CATG 1 cut(s) 502
Hin6I GCGC 2 cut(s) 180, 390
HinP1I GCGC 2 cut(s) 180, 390
HincII GTYRAC 2 cut(s) 366, 516
HindII GTYRAC 2 cut(s) 366, 516
HinfI GANTC 1 cut(s) 425
HphI GGTGA 2 cut(s) 79, 202
Hpy166II GTNNAC 4 cut(s) 366, 412, 429, 516
Hpy188I TCNGA 1 cut(s) 358
Hpy188III TCNNGA 3 cut(s) 73, 208, 466
Hpy8I GTNNAC 4 cut(s) 366, 412, 429, 516
HpyAV CCTTC 2 cut(s) 430, 436
HpyCH4III ACNGT 3 cut(s) 91, 130, 250
HpyCH4V TGCA 2 cut(s) 495, 543
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 162, 398
Hsp92II CATG 1 cut(s) 502
HspAI GCGC 2 cut(s) 180, 390
KflI GGGWCCC 1 cut(s) 107
Ksp22I TGATCA 1 cut(s) 69
Kzo9I GATC 4 cut(s) 69, 75, 317, 459
LpnPI CCDG 9 cut(s) 103, 151, 166, 314, 354, 387, 428, 433, 465
Lsp1109I GCAGC 2 cut(s) 168, 479
MaeI CTAG 1 cut(s) 29
MaeIII GTNAC 4 cut(s) 130, 140, 190, 224
MalI GATC 4 cut(s) 71, 77, 319, 461
MboI GATC 4 cut(s) 69, 75, 317, 459
MboII GAAGA 4 cut(s) 70, 109, 469, 481
MlsI TGGCCA 1 cut(s) 270
MluCI AATT 4 cut(s) 148, 197, 508, 532
MluNI TGGCCA 1 cut(s) 270
MlyI GAGTC 1 cut(s) 434
MnlI CCTC 1 cut(s) 392
Mox20I TGGCCA 1 cut(s) 270
MscI TGGCCA 1 cut(s) 270
Msp20I TGGCCA 1 cut(s) 270
MwoI GCNNNNNNNGC 3 cut(s) 38, 162, 398
NdeII GATC 4 cut(s) 69, 75, 317, 459
NlaIII CATG 1 cut(s) 502
NlaIV GGNNCC 4 cut(s) 108, 109, 122, 373
NmuCI GTSAC 3 cut(s) 130, 190, 224
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PkrI GCNGC 2 cut(s) 158, 494
Ple19I CGATCG 1 cut(s) 320
PleI GAGTC 1 cut(s) 433
PpsI GAGTC 1 cut(s) 433
PpuMI RGGWCCY 1 cut(s) 107
Psp5II RGGWCCY 1 cut(s) 107
PspEI GGTNACC 1 cut(s) 190
PspFI CCCAGC 1 cut(s) 401
PspN4I GGNNCC 4 cut(s) 108, 109, 122, 373
PspPI GGNCC 1 cut(s) 107
PspPPI RGGWCCY 1 cut(s) 107
PvuI CGATCG 1 cut(s) 320
SatI GCNGC 2 cut(s) 157, 493
Sau3AI GATC 4 cut(s) 69, 75, 317, 459
Sau96I GGNCC 1 cut(s) 107
SchI GAGTC 1 cut(s) 434
SetI ASST 8 cut(s) 122, 167, 316, 356, 384, 417, 447, 494
SinI GGWCC 1 cut(s) 107
Sse9I AATT 4 cut(s) 148, 197, 508, 532
SspMI CTAG 1 cut(s) 29
StyI CCWWGG 1 cut(s) 519
TaaI ACNGT 3 cut(s) 91, 130, 250
TaqI TCGA 3 cut(s) 316, 320, 447
TaqII GACCGA 1 cut(s) 212
TasI AATT 4 cut(s) 148, 197, 508, 532
TscAI CASTG 2 cut(s) 253, 427
TseFI GTSAC 3 cut(s) 130, 190, 224
TseI GCWGC 2 cut(s) 156, 492
Tsp45I GTSAC 3 cut(s) 130, 190, 224
TspDTI ATGAA 3 cut(s) 17, 37, 470
TspGWI ACGGA 1 cut(s) 159
TspRI CASTG 2 cut(s) 253, 427
VpaK11BI GGWCC 1 cut(s) 107
XapI RAATTY 2 cut(s) 197, 532
XspI CTAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.