Rmu_sc0013801.1_g000014

Late embryogenesis abundant protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013801.1
Physical Location & Seq
Reverse (-)
28652 .. 29116
465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013801.1_g000014.1.cds

Sequence Viewer

Length: 465 bp
atgaccgtttttggtctcactgtgatgaaagtcaagaacccgaagttgagattgggtgcagaccttaaccctgcccctgctacaccttcatttgacacaaccttcaaaacacaaatcagggtcaagaacacgaattggggtccatataaatttgatgccggcacaataacattcatgtaccaaggggtggctattgggcaagttactgttcctaagagcaaggctggtatgcgttccaccaagaagatgaatgtcaaagtgagtctgaatgctaatggattgccaagcagttcgaatcttggcagtgaattgaacagtggggtcttgatgctgaacagccaagccaaattgaccggaaaggttgaattgatgctcataatgaagaagaagaagtctgccaccatggactgcactatagctttcgatttgtccactaagactgtcaaaagtttagaatgcaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

154

Amino Acids

16.67

Weight (kDa)

10.09

Isoelectric Point (pI)

25.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000065)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64065
fragaria_vesca FvH4_1g02250 FvH4_4g18381 FvH4_5g03320 FvH4_5g03331 FvH4_5g03333 FvH4_5g03334 FvH4_5g03340 FvH4_5g03342 FvH4_5g03344 FvH4_5g03370 FvH4_5g03391 FvH4_5g03400 FvH4_5g03430 FvH4_5g03450 FvH4_7g30570
malus_domestica MD06G1091500.v1.1 MD06G1093100.v1.1 MD06G1093400.v1.1 MD06G1093600.v1.1 MD06G1093700.v1.1 MD06G1093800.v1.1 MD06G1094000.v1.1 MD06G1094100.v1.1 MD06G1094200.v1.1 MD06G1094300.v1.1 MD06G1094400.v1.1 MD06G1094500.v1.1 MD06G1094600.v1.1 MD07G1281600.v1.1 MD14G1113800.v1.1 MD14G1114100.v1.1 MD14G1114500.v1.1 MD14G1114600.v1.1 MD14G1114700.v1.1 MD14G1114800.v1.1 MD15G1164000.v1.1
prunus_persica Prupe.2G303300_v2.0.a1 Prupe.5G108800_v2.0.a1 Prupe.5G109700_v2.0.a1 Prupe.5G109800_v2.0.a1 Prupe.7G233300_v2.0.a1
pyrus_communis pycom01g22140 pycom02g01830 pycom03g14740 pycom06g08690 pycom06g08710 pycom06g08720 pycom06g08900 pycom06g08970 pycom06g09040 pycom06g09090 pycom06g09100 pycom06g09120 pycom06g09130 pycom06g09140
rosa_chinensis RchiOBHm_Chr1g0379411 RchiOBHm_Chr2g0087371 RchiOBHm_Chr5g0019191 RchiOBHm_Chr7g0196211 RchiOBHm_Chr7g0196241 RchiOBHm_Chr7g0196251 RchiOBHm_Chr7g0196271 RchiOBHm_Chr7g0196311 RchiOBHm_Chr7g0196321 RchiOBHm_Chr7g0196331 RchiOBHm_Chr7g0196341 RchiOBHm_Chr7g0196381 RchiOBHm_Chr7g0196391 RchiOBHm_Chr7g0196401 RchiOBHm_Chr7g0196411 RchiOBHm_Chr7g0196421 RchiOBHm_Chr7g0196431 RchiOBHm_Chr7g0196441 RchiOBHm_Chr7g0196461 RchiOBHm_Chr7g0209531 RchiOBHm_Chr7g0209541 RchiOBHm_Chr7g0209551 RchiOBHm_Chr7g0209571 RchiOBHm_Chr7g0209581 RchiOBHm_Chr7g0209591 RchiOBHm_Chr7g0211821 RchiOBHm_Chr7g0222831 RchiOBHm_Chr7g0222841 RchiOBHm_Chr7g0222851 RchiOBHm_Chr7g0222871 RchiOBHm_Chr7g0222881 RchiOBHm_Chr7g0222891 RchiOBHm_Chr7g0222901
rosa_laevigata RLG00000002015 RLG00000002016 RLG00000002017 RLG00000002018 RLG00000002019 RLG00000002020 RLG00000002021 RLG00000002023 RLG00000002024 RLG00000002963 RLG00000003114 RLG00000003115 RLG00000003117 RLG00000003119 RLG00000003121 RLG00000004013 RLG00000004015 RLG00000004016 RLG00000004017 RLG00000004018 RLG00000004019 RLG00000004020 RLG00000004021 RLG00000004022 RLG00000004023 RLG00000004024 RLG00000004025 RLG00000004026 RLG00000004027 RLG00000004029 RLG00000004030 RLG00000004032 RLG00000004033 RLG00000004034 RLG00000004035 RLG00000004037 RLG00000004038 RLG00000004043 RLG00000004044 RLG00000004046 RLG00000004047 RLG00000004048 RLG00000004050 RLG00000015860 RLG00000024213 RLG00000024219 RLG00000026400 RLG00000032427
rosa_multiflora Rmu_co8316975.1_g000001 Rmu_co8321397.1_g000001 Rmu_co8336999.1_g000001 Rmu_co8388981.1_g000001 Rmu_co8425655.1_g000002 Rmu_co8482553.1_g000001 Rmu_sc0000243.1_g000008 Rmu_sc0000243.1_g000011 Rmu_sc0000243.1_g000015 Rmu_sc0000243.1_g000019 Rmu_sc0000243.1_g000021 Rmu_sc0000243.1_g000022 Rmu_sc0000736.1_g000005 Rmu_sc0001867.1_g000001 Rmu_sc0001867.1_g000002 Rmu_sc0001867.1_g000004 Rmu_sc0001867.1_g000005 Rmu_sc0002142.1_g000002 Rmu_sc0005676.1_g000014 Rmu_sc0005993.1_g000004 Rmu_sc0005993.1_g000009 Rmu_sc0006064.1_g000004 Rmu_sc0006761.1_g000012 Rmu_sc0006761.1_g000015 Rmu_sc0007292.1_g000017 Rmu_sc0007292.1_g000022 Rmu_sc0007292.1_g000027 Rmu_sc0007292.1_g000030 Rmu_sc0008126.1_g000003 Rmu_sc0008126.1_g000004 Rmu_sc0008581.1_g000010 Rmu_sc0008581.1_g000011 Rmu_sc0008581.1_g000012 Rmu_sc0008828.1_g000008 Rmu_sc0008828.1_g000009 Rmu_sc0008884.1_g000001 Rmu_sc0008884.1_g000002 Rmu_sc0008884.1_g000007 Rmu_sc0008884.1_g000008 Rmu_sc0008884.1_g000009 Rmu_sc0009474.1_g000001 Rmu_sc0009738.1_g000002 Rmu_sc0009738.1_g000003 Rmu_sc0011534.1_g000002 Rmu_sc0011534.1_g000003 Rmu_sc0013801.1_g000001 Rmu_sc0013801.1_g000008 Rmu_sc0013801.1_g000014 Rmu_sc0013801.1_g000015 Rmu_sc0018549.1_g000001 Rmu_sc0022712.1_g000001 Rmu_sc0023035.1_g000001 Rmu_sc0030855.1_g000001 Rmu_sc0030855.1_g000002 Rmu_sc0033647.1_g000003 Rmu_sc0034421.1_g000001 Rmu_sc0038138.1_g000001
rosa_roxburghii Rroxscaffold_1G00058800 Rroxscaffold_1G00074140 Rroxscaffold_2G00153660 Rroxscaffold_3G00236440 Rroxscaffold_3G00236450 Rroxscaffold_3G00236460 Rroxscaffold_3G00236470 Rroxscaffold_3G00236480 Rroxscaffold_3G00247410 Rroxscaffold_3G00249230 Rroxscaffold_3G00249250 Rroxscaffold_3G00249260 Rroxscaffold_3G00249280 Rroxscaffold_3G00259300 Rroxscaffold_3G00259320 Rroxscaffold_3G00259330 Rroxscaffold_3G00259340 Rroxscaffold_3G00259360 Rroxscaffold_3G00259370 Rroxscaffold_3G00259380 Rroxscaffold_3G00259390 Rroxscaffold_3G00259400 Rroxscaffold_3G00259440 Rroxscaffold_3G00259450 Rroxscaffold_3G00259460 Rroxscaffold_3G00259470 Rroxscaffold_3G00259480 Rroxscaffold_3G00259500 Rroxscaffold_3G00259510 Rroxscaffold_3G00259530 Rroxscaffold_3G00259550 Rroxscaffold_3G00259560 Rroxscaffold_3G00259580 Rroxscaffold_3G00259590 Rroxscaffold_3G00259600 Rroxscaffold_3G00259630 Rroxscaffold_4G00280180
rosa_rugosa Rorug01G0411900 Rorug07G0032100 Rorug07G0032200 Rorug07G0032300 Rorug07G0032300 Rorug07G0032400 Rorug07G0032700 Rorug07G0032800 Rorug07G0032900 Rorug07G0033000 Rorug07G0033100 Rorug07G0033100 Rorug07G0033100 Rorug07G0033100 Rorug07G0033100 Rorug07G0033200 Rorug07G0033300 Rorug07G0033300 Rorug07G0033400 Rorug07G0033500 Rorug07G0033500 Rorug07G0033500 Rorug07G0033500 Rorug07G0114200 Rorug07G0114400.1 Rorug07G0128900
rosa_samantha Rh1CG404900 Rh1DG423100 Rh2BG027600 Rh5BG138600 Rh7AG157700 Rh7AG261600 Rh7BG159300 Rh7BG159400 Rh7BG255200 Rh7CG163400 Rh7CG163500 Rh7CG163600 Rh7CG163800 Rh7CG164000 Rh7CG164100 Rh7CG164200 Rh7CG164400 Rh7CG164500 Rh7CG164600 Rh7CG164700 Rh7CG164800 Rh7CG164900 Rh7CG165000 Rh7CG165100 Rh7CG165200 Rh7CG165300 Rh7CG165400 Rh7CG165500 Rh7CG165600 Rh7CG165800 Rh7CG165900 Rh7CG166000 Rh7CG166200 Rh7CG263800 Rh7CG264000 Rh7CG264100 Rh7CG264200 Rh7CG264300 Rh7CG264400 Rh7CG278200 Rh7CG374700 Rh7CG374800 Rh7CG375000 Rh7CG375100 Rh7CG375200 Rh7CG375300 Rh7DG158700 Rh7DG158800 Rh7DG268200
rosa_wichuraiana Rw1G037980 Rw2G002230 Rw5G012400 Rw7G013490 Rw7G013500 Rw7G013600 Rw7G013610 Rw7G013640 Rw7G013650 Rw7G013660 Rw7G013670 Rw7G013690 Rw7G013700 Rw7G013710 Rw7G013730 Rw7G013740 Rw7G013750 Rw7G013760 Rw7G013770 Rw7G013780 Rw7G013800 Rw7G020960 Rw7G020970 Rw7G020990 Rw7G021000 Rw7G021010 Rw7G021020 Rw7G021030 Rw7G021040 Rw7G021050 Rw7G022310 Rw7G030300 Rw7G030310 Rw7G030320 Rw7G030330 Rw7G030340 Rw7G030350 Rw7G030360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 187
AcsI RAATTY 1 cut(s) 149
AfaI GTAC 1 cut(s) 179
AfiI CCNNNNNNNGG 1 cut(s) 187
AgsI TTSAA 3 cut(s) 106, 313, 365
AjuI GAANNNNNNNTTGG 2 cut(s) 35, 67
AluBI AGCT 1 cut(s) 419
AluI AGCT 1 cut(s) 419
Alw26I GTCTC 1 cut(s) 20
ApoI RAATTY 1 cut(s) 149
AspS9I GGNCC 1 cut(s) 140
AsuII TTCGAA 1 cut(s) 293
AvaII GGWCC 1 cut(s) 140
BcoDI GTCTC 1 cut(s) 20
BfmI CTRYAG 1 cut(s) 414
Bme18I GGWCC 1 cut(s) 140
BmgT120I GGNCC 1 cut(s) 140
BmiI GGNNCC 1 cut(s) 141
BmsI GCATC 3 cut(s) 145, 318, 360
Bpu14I TTCGAA 1 cut(s) 293
BsaI GGTCTC 1 cut(s) 20
BsaJI CCNNGG 2 cut(s) 181, 402
BsaWI WCCGGW 1 cut(s) 353
Bsc4I CCNNNNNNNGG 1 cut(s) 187
Bse118I RCCGGY 1 cut(s) 158
BseDI CCNNGG 2 cut(s) 181, 402
BseLI CCNNNNNNNGG 1 cut(s) 187
BsgI GTGCAG 2 cut(s) 78, 394
BsiSI CCGG 2 cut(s) 159, 354
BslI CCNNNNNNNGG 1 cut(s) 187
BsmAI GTCTC 1 cut(s) 20
BsmI GAATGC 2 cut(s) 274, 461
Bso31I GGTCTC 1 cut(s) 20
Bsp119I TTCGAA 1 cut(s) 293
Bsp19I CCATGG 1 cut(s) 402
BspLI GGNNCC 1 cut(s) 141
BspT104I TTCGAA 1 cut(s) 293
BspTNI GGTCTC 1 cut(s) 20
BsrFI RCCGGY 1 cut(s) 158
BssAI RCCGGY 1 cut(s) 158
BssECI CCNNGG 2 cut(s) 181, 402
BssT1I CCWWGG 2 cut(s) 181, 402
Bst4CI ACNGT 5 cut(s) 7, 22, 208, 317, 442
BstBI TTCGAA 1 cut(s) 293
BstC8I GCNNGC 1 cut(s) 160
BstDEI CTNAG 2 cut(s) 213, 435
BstDSI CCRYGG 1 cut(s) 402
BstMAI GTCTC 1 cut(s) 20
BstSFI CTRYAG 1 cut(s) 414
BtgI CCRYGG 1 cut(s) 402
BtsI GCAGTG 1 cut(s) 310
BtsIMutI CAGTG 3 cut(s) 18, 310, 322
Cac8I GCNNGC 1 cut(s) 160
Cfr10I RCCGGY 1 cut(s) 158
Cfr13I GGNCC 1 cut(s) 140
Csp6I GTAC 1 cut(s) 178
CviAII CATG 2 cut(s) 175, 403
CviJI RGCY 5 cut(s) 191, 224, 339, 344, 419
CviKI_1 RGCY 5 cut(s) 191, 224, 339, 344, 419
CviQI GTAC 1 cut(s) 178
DdeI CTNAG 2 cut(s) 213, 435
Eco130I CCWWGG 2 cut(s) 181, 402
Eco31I GGTCTC 1 cut(s) 20
Eco47I GGWCC 1 cut(s) 140
EcoT14I CCWWGG 2 cut(s) 181, 402
ErhI CCWWGG 2 cut(s) 181, 402
FaeI CATG 2 cut(s) 178, 406
FaiI YATR 7 cut(s) 145, 147, 176, 230, 377, 404, 416
FatI CATG 2 cut(s) 174, 402
HapII CCGG 2 cut(s) 159, 354
Hin1II CATG 2 cut(s) 178, 406
HinfI GANTC 2 cut(s) 262, 295
HpaII CCGG 2 cut(s) 159, 354
Hpy166II GTNNAC 1 cut(s) 432
Hpy188I TCNGA 1 cut(s) 267
Hpy188III TCNNGA 3 cut(s) 34, 124, 325
Hpy8I GTNNAC 1 cut(s) 432
HpyAV CCTTC 2 cut(s) 96, 112
HpyCH4III ACNGT 5 cut(s) 7, 22, 208, 317, 442
HpyCH4V TGCA 3 cut(s) 59, 411, 459
HpyF3I CTNAG 2 cut(s) 213, 435
Hsp92II CATG 2 cut(s) 178, 406
KroI GCCGGC 1 cut(s) 158
KroNI GCCGGC 1 cut(s) 160
LpnPI CCDG 6 cut(s) 84, 90, 103, 172, 210, 367
LweI GCATC 3 cut(s) 145, 318, 360
MaeIII GTNAC 1 cut(s) 202
MboII GAAGA 4 cut(s) 256, 394, 397, 400
MluCI AATT 5 cut(s) 133, 149, 308, 347, 365
MlyI GAGTC 1 cut(s) 271
MroNI GCCGGC 1 cut(s) 158
MseI TTAA 1 cut(s) 66
MslI CAYNNNNRTG 1 cut(s) 23
MspI CCGG 2 cut(s) 159, 354
Mva1269I GAATGC 2 cut(s) 274, 461
NaeI GCCGGC 1 cut(s) 160
NcoI CCATGG 1 cut(s) 402
NgoMIV GCCGGC 1 cut(s) 158
NlaIII CATG 2 cut(s) 178, 406
NlaIV GGNNCC 1 cut(s) 141
NspV TTCGAA 1 cut(s) 293
PctI GAATGC 2 cut(s) 274, 461
PdiI GCCGGC 1 cut(s) 160
PfeI GAWTC 1 cut(s) 295
PflMI CCANNNNNTGG 1 cut(s) 187
PleI GAGTC 1 cut(s) 270
PpsI GAGTC 1 cut(s) 270
PspN4I GGNNCC 1 cut(s) 141
PspPI GGNCC 1 cut(s) 140
RsaI GTAC 1 cut(s) 179
RsaNI GTAC 1 cut(s) 178
RseI CAYNNNNRTG 1 cut(s) 23
SaqAI TTAA 1 cut(s) 66
Sau96I GGNCC 1 cut(s) 140
SchI GAGTC 1 cut(s) 271
SetI ASST 5 cut(s) 66, 88, 104, 363, 421
SfaNI GCATC 3 cut(s) 145, 318, 360
SfcI CTRYAG 1 cut(s) 414
SfuI TTCGAA 1 cut(s) 293
SinI GGWCC 1 cut(s) 140
SmiMI CAYNNNNRTG 1 cut(s) 23
Sse9I AATT 5 cut(s) 133, 149, 308, 347, 365
StyI CCWWGG 2 cut(s) 181, 402
TaaI ACNGT 5 cut(s) 7, 22, 208, 317, 442
TaqI TCGA 2 cut(s) 293, 423
TasI AATT 5 cut(s) 133, 149, 308, 347, 365
TfiI GAWTC 1 cut(s) 295
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TscAI CASTG 3 cut(s) 25, 310, 322
TspDTI ATGAA 5 cut(s) 41, 78, 163, 263, 395
TspRI CASTG 3 cut(s) 25, 310, 322
Van91I CCANNNNNTGG 1 cut(s) 187
VpaK11BI GGWCC 1 cut(s) 140
XapI RAATTY 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.