pycom06g08690

Late embryogenesis abundant protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Reverse (-)
13913537 .. 13913986
450 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g08690.1

Sequence Viewer

Length: 450 bp
ATGAAAGTTAAGACTCCGAAAGTTAGGCTAGGCAATATCAACATTCAAGATCTCAACTTTGTCCCAGCAACACCTTCATTTGACGCAAAATTCACAACCCAAATAAGGATCAAGAACACAAACTGGGGTCGTTACAAGTTTGATGCTAGCAATGTCACGTTTTTGTACCAAGGAGCGACTGTCGGGCAAGTTGATATTCCAAAGAGCAAGGCTGGAATGCTTTCCACCAAAAAAGTGAATGTCGAGGTCAGCTTGAGCTCGAGTTCATTAAGCAATTCGAATCTTGGCAGTGAATTGAGCAGCGGGGTGTTGACTCTCAACAGCACAGCTAAGTTGACGGGAAAGGTTGAATTGATGCTTATAATGAAGAAGAAGAAGTCTTCCAACATGGACTGCACCATTGCATTTGAACTGTCATCCAAGACTCTCAGAAGTTTGCAGTGCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

150

Amino Acids

16.29

Weight (kDa)

10.01

Isoelectric Point (pI)

26.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 35 - 133 1.1e-06 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000065)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64065
fragaria_vesca FvH4_1g02250 FvH4_4g18381 FvH4_5g03320 FvH4_5g03331 FvH4_5g03333 FvH4_5g03334 FvH4_5g03340 FvH4_5g03342 FvH4_5g03344 FvH4_5g03370 FvH4_5g03391 FvH4_5g03400 FvH4_5g03430 FvH4_5g03450 FvH4_7g30570
malus_domestica MD06G1091500.v1.1 MD06G1093100.v1.1 MD06G1093400.v1.1 MD06G1093600.v1.1 MD06G1093700.v1.1 MD06G1093800.v1.1 MD06G1094000.v1.1 MD06G1094100.v1.1 MD06G1094200.v1.1 MD06G1094300.v1.1 MD06G1094400.v1.1 MD06G1094500.v1.1 MD06G1094600.v1.1 MD07G1281600.v1.1 MD14G1113800.v1.1 MD14G1114100.v1.1 MD14G1114500.v1.1 MD14G1114600.v1.1 MD14G1114700.v1.1 MD14G1114800.v1.1 MD15G1164000.v1.1
prunus_persica Prupe.2G303300_v2.0.a1 Prupe.5G108800_v2.0.a1 Prupe.5G109700_v2.0.a1 Prupe.5G109800_v2.0.a1 Prupe.7G233300_v2.0.a1
pyrus_communis pycom01g22140 pycom02g01830 pycom03g14740 pycom06g08690 pycom06g08710 pycom06g08720 pycom06g08900 pycom06g08970 pycom06g09040 pycom06g09090 pycom06g09100 pycom06g09120 pycom06g09130 pycom06g09140
rosa_chinensis RchiOBHm_Chr1g0379411 RchiOBHm_Chr2g0087371 RchiOBHm_Chr5g0019191 RchiOBHm_Chr7g0196211 RchiOBHm_Chr7g0196241 RchiOBHm_Chr7g0196251 RchiOBHm_Chr7g0196271 RchiOBHm_Chr7g0196311 RchiOBHm_Chr7g0196321 RchiOBHm_Chr7g0196331 RchiOBHm_Chr7g0196341 RchiOBHm_Chr7g0196381 RchiOBHm_Chr7g0196391 RchiOBHm_Chr7g0196401 RchiOBHm_Chr7g0196411 RchiOBHm_Chr7g0196421 RchiOBHm_Chr7g0196431 RchiOBHm_Chr7g0196441 RchiOBHm_Chr7g0196461 RchiOBHm_Chr7g0209531 RchiOBHm_Chr7g0209541 RchiOBHm_Chr7g0209551 RchiOBHm_Chr7g0209571 RchiOBHm_Chr7g0209581 RchiOBHm_Chr7g0209591 RchiOBHm_Chr7g0211821 RchiOBHm_Chr7g0222831 RchiOBHm_Chr7g0222841 RchiOBHm_Chr7g0222851 RchiOBHm_Chr7g0222871 RchiOBHm_Chr7g0222881 RchiOBHm_Chr7g0222891 RchiOBHm_Chr7g0222901
rosa_laevigata RLG00000002015 RLG00000002016 RLG00000002017 RLG00000002018 RLG00000002019 RLG00000002020 RLG00000002021 RLG00000002023 RLG00000002024 RLG00000002963 RLG00000003114 RLG00000003115 RLG00000003117 RLG00000003119 RLG00000003121 RLG00000004013 RLG00000004015 RLG00000004016 RLG00000004017 RLG00000004018 RLG00000004019 RLG00000004020 RLG00000004021 RLG00000004022 RLG00000004023 RLG00000004024 RLG00000004025 RLG00000004026 RLG00000004027 RLG00000004029 RLG00000004030 RLG00000004032 RLG00000004033 RLG00000004034 RLG00000004035 RLG00000004037 RLG00000004038 RLG00000004043 RLG00000004044 RLG00000004046 RLG00000004047 RLG00000004048 RLG00000004050 RLG00000015860 RLG00000024213 RLG00000024219 RLG00000026400 RLG00000032427
rosa_multiflora Rmu_co8316975.1_g000001 Rmu_co8321397.1_g000001 Rmu_co8336999.1_g000001 Rmu_co8388981.1_g000001 Rmu_co8425655.1_g000002 Rmu_co8482553.1_g000001 Rmu_sc0000243.1_g000008 Rmu_sc0000243.1_g000011 Rmu_sc0000243.1_g000015 Rmu_sc0000243.1_g000019 Rmu_sc0000243.1_g000021 Rmu_sc0000243.1_g000022 Rmu_sc0000736.1_g000005 Rmu_sc0001867.1_g000001 Rmu_sc0001867.1_g000002 Rmu_sc0001867.1_g000004 Rmu_sc0001867.1_g000005 Rmu_sc0002142.1_g000002 Rmu_sc0005676.1_g000014 Rmu_sc0005993.1_g000004 Rmu_sc0005993.1_g000009 Rmu_sc0006064.1_g000004 Rmu_sc0006761.1_g000012 Rmu_sc0006761.1_g000015 Rmu_sc0007292.1_g000017 Rmu_sc0007292.1_g000022 Rmu_sc0007292.1_g000027 Rmu_sc0007292.1_g000030 Rmu_sc0008126.1_g000003 Rmu_sc0008126.1_g000004 Rmu_sc0008581.1_g000010 Rmu_sc0008581.1_g000011 Rmu_sc0008581.1_g000012 Rmu_sc0008828.1_g000008 Rmu_sc0008828.1_g000009 Rmu_sc0008884.1_g000001 Rmu_sc0008884.1_g000002 Rmu_sc0008884.1_g000007 Rmu_sc0008884.1_g000008 Rmu_sc0008884.1_g000009 Rmu_sc0009474.1_g000001 Rmu_sc0009738.1_g000002 Rmu_sc0009738.1_g000003 Rmu_sc0011534.1_g000002 Rmu_sc0011534.1_g000003 Rmu_sc0013801.1_g000001 Rmu_sc0013801.1_g000008 Rmu_sc0013801.1_g000014 Rmu_sc0013801.1_g000015 Rmu_sc0018549.1_g000001 Rmu_sc0022712.1_g000001 Rmu_sc0023035.1_g000001 Rmu_sc0030855.1_g000001 Rmu_sc0030855.1_g000002 Rmu_sc0033647.1_g000003 Rmu_sc0034421.1_g000001 Rmu_sc0038138.1_g000001
rosa_roxburghii Rroxscaffold_1G00058800 Rroxscaffold_1G00074140 Rroxscaffold_2G00153660 Rroxscaffold_3G00236440 Rroxscaffold_3G00236450 Rroxscaffold_3G00236460 Rroxscaffold_3G00236470 Rroxscaffold_3G00236480 Rroxscaffold_3G00247410 Rroxscaffold_3G00249230 Rroxscaffold_3G00249250 Rroxscaffold_3G00249260 Rroxscaffold_3G00249280 Rroxscaffold_3G00259300 Rroxscaffold_3G00259320 Rroxscaffold_3G00259330 Rroxscaffold_3G00259340 Rroxscaffold_3G00259360 Rroxscaffold_3G00259370 Rroxscaffold_3G00259380 Rroxscaffold_3G00259390 Rroxscaffold_3G00259400 Rroxscaffold_3G00259440 Rroxscaffold_3G00259450 Rroxscaffold_3G00259460 Rroxscaffold_3G00259470 Rroxscaffold_3G00259480 Rroxscaffold_3G00259500 Rroxscaffold_3G00259510 Rroxscaffold_3G00259530 Rroxscaffold_3G00259550 Rroxscaffold_3G00259560 Rroxscaffold_3G00259580 Rroxscaffold_3G00259590 Rroxscaffold_3G00259600 Rroxscaffold_3G00259630 Rroxscaffold_4G00280180
rosa_rugosa Rorug01G0411900 Rorug07G0032100 Rorug07G0032200 Rorug07G0032300 Rorug07G0032300 Rorug07G0032400 Rorug07G0032700 Rorug07G0032800 Rorug07G0032900 Rorug07G0033000 Rorug07G0033100 Rorug07G0033100 Rorug07G0033100 Rorug07G0033100 Rorug07G0033100 Rorug07G0033200 Rorug07G0033300 Rorug07G0033300 Rorug07G0033400 Rorug07G0033500 Rorug07G0033500 Rorug07G0033500 Rorug07G0033500 Rorug07G0114200 Rorug07G0114400.1 Rorug07G0128900
rosa_samantha Rh1CG404900 Rh1DG423100 Rh2BG027600 Rh5BG138600 Rh7AG157700 Rh7AG261600 Rh7BG159300 Rh7BG159400 Rh7BG255200 Rh7CG163400 Rh7CG163500 Rh7CG163600 Rh7CG163800 Rh7CG164000 Rh7CG164100 Rh7CG164200 Rh7CG164400 Rh7CG164500 Rh7CG164600 Rh7CG164700 Rh7CG164800 Rh7CG164900 Rh7CG165000 Rh7CG165100 Rh7CG165200 Rh7CG165300 Rh7CG165400 Rh7CG165500 Rh7CG165600 Rh7CG165800 Rh7CG165900 Rh7CG166000 Rh7CG166200 Rh7CG263800 Rh7CG264000 Rh7CG264100 Rh7CG264200 Rh7CG264300 Rh7CG264400 Rh7CG278200 Rh7CG374700 Rh7CG374800 Rh7CG375000 Rh7CG375100 Rh7CG375200 Rh7CG375300 Rh7DG158700 Rh7DG158800 Rh7DG268200
rosa_wichuraiana Rw1G037980 Rw2G002230 Rw5G012400 Rw7G013490 Rw7G013500 Rw7G013600 Rw7G013610 Rw7G013640 Rw7G013650 Rw7G013660 Rw7G013670 Rw7G013690 Rw7G013700 Rw7G013710 Rw7G013730 Rw7G013740 Rw7G013750 Rw7G013760 Rw7G013770 Rw7G013780 Rw7G013800 Rw7G020960 Rw7G020970 Rw7G020990 Rw7G021000 Rw7G021010 Rw7G021020 Rw7G021030 Rw7G021040 Rw7G021050 Rw7G022310 Rw7G030300 Rw7G030310 Rw7G030320 Rw7G030330 Rw7G030340 Rw7G030350 Rw7G030360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 362
AciI CCGC 1 cut(s) 303
AclWI GGATC 1 cut(s) 116
AcsI RAATTY 1 cut(s) 89
AfaI GTAC 1 cut(s) 167
AfiI CCNNNNNNNGG 1 cut(s) 105
AgsI TTSAA 3 cut(s) 47, 350, 410
AluBI AGCT 3 cut(s) 252, 258, 329
AluI AGCT 3 cut(s) 252, 258, 329
Alw21I GWGCWC 1 cut(s) 260
AlwI GGATC 1 cut(s) 116
Ama87I CYCGRG 1 cut(s) 259
ApeKI GCWGC 1 cut(s) 300
ApoI RAATTY 1 cut(s) 89
Asp700I GAANNNNTTC 1 cut(s) 220
AsuII TTCGAA 1 cut(s) 278
AsuNHI GCTAGC 1 cut(s) 146
AvaI CYCGRG 1 cut(s) 259
BanII GRGCYC 1 cut(s) 260
BbsI GAAGAC 1 cut(s) 372
Bbv12I GWGCWC 1 cut(s) 260
BbvI GCAGC 1 cut(s) 312
BfaI CTAG 2 cut(s) 29, 147
BglII AGATCT 1 cut(s) 49
BisI GCNGC 1 cut(s) 301
BlsI GCNGC 1 cut(s) 302
BmeT110I CYCGRG 1 cut(s) 259
BmrI ACTGGG 1 cut(s) 133
BmsI GCATC 2 cut(s) 133, 345
BmtI GCTAGC 1 cut(s) 150
BmuI ACTGGG 1 cut(s) 133
BpiI GAAGAC 1 cut(s) 372
Bpu14I TTCGAA 1 cut(s) 278
BpuEI CTTGAG 1 cut(s) 274
BsaJI CCNNGG 1 cut(s) 169
BsaXI ACNNNNNCTCC 2 cut(s) 165, 195
Bsc4I CCNNNNNNNGG 1 cut(s) 105
Bse1I ACTGG 1 cut(s) 128
Bse3DI GCAATG 2 cut(s) 157, 399
BseDI CCNNGG 1 cut(s) 169
BseGI GGATG 1 cut(s) 416
BseLI CCNNNNNNNGG 1 cut(s) 105
BseMI GCAATG 2 cut(s) 157, 399
BseMII CTCAG 1 cut(s) 442
BseNI ACTGG 1 cut(s) 128
BseXI GCAGC 1 cut(s) 312
BseYI CCCAGC 1 cut(s) 64
BsgI GTGCAG 1 cut(s) 379
BsiHKAI GWGCWC 1 cut(s) 260
BsiHKCI CYCGRG 1 cut(s) 259
BslFI GGGAC 1 cut(s) 47
BslI CCNNNNNNNGG 1 cut(s) 105
BsmFI GGGAC 1 cut(s) 47
BsmI GAATGC 1 cut(s) 222
BsoBI CYCGRG 1 cut(s) 259
Bsp119I TTCGAA 1 cut(s) 278
Bsp1286I GDGCHC 1 cut(s) 260
Bsp143I GATC 2 cut(s) 49, 108
BspACI CCGC 1 cut(s) 303
BspCNI CTCAG 1 cut(s) 441
BspOI GCTAGC 1 cut(s) 150
BspPI GGATC 1 cut(s) 116
BspT104I TTCGAA 1 cut(s) 278
BsrDI GCAATG 2 cut(s) 157, 399
BsrI ACTGG 1 cut(s) 128
BssECI CCNNGG 1 cut(s) 169
BssMI GATC 2 cut(s) 49, 108
BssT1I CCWWGG 1 cut(s) 169
Bst4CI ACNGT 2 cut(s) 181, 414
BstBI TTCGAA 1 cut(s) 278
BstC8I GCNNGC 1 cut(s) 148
BstDEI CTNAG 2 cut(s) 330, 428
BstF5I GGATG 1 cut(s) 416
BstKTI GATC 2 cut(s) 52, 111
BstMBI GATC 2 cut(s) 49, 108
BstV1I GCAGC 1 cut(s) 312
BstV2I GAAGAC 1 cut(s) 372
BstX2I RGATCY 1 cut(s) 49
BstYI RGATCY 1 cut(s) 49
BtsCI GGATG 1 cut(s) 416
BtsI GCAGTG 2 cut(s) 295, 446
BtsIMutI CAGTG 2 cut(s) 295, 446
Cac8I GCNNGC 1 cut(s) 148
CseI GACGC 1 cut(s) 92
Csp6I GTAC 1 cut(s) 166
CviAII CATG 1 cut(s) 388
CviJI RGCY 5 cut(s) 28, 212, 252, 258, 329
CviKI_1 RGCY 5 cut(s) 28, 212, 252, 258, 329
CviQI GTAC 1 cut(s) 166
DdeI CTNAG 2 cut(s) 330, 428
DpnI GATC 2 cut(s) 51, 110
DpnII GATC 2 cut(s) 49, 108
Ecl136II GAGCTC 1 cut(s) 258
Eco130I CCWWGG 1 cut(s) 169
Eco24I GRGCYC 1 cut(s) 260
Eco53kI GAGCTC 1 cut(s) 258
Eco88I CYCGRG 1 cut(s) 259
EcoICRI GAGCTC 1 cut(s) 258
EcoT14I CCWWGG 1 cut(s) 169
EcoT38I GRGCYC 1 cut(s) 260
ErhI CCWWGG 1 cut(s) 169
FaeI CATG 1 cut(s) 391
FaiI YATR 2 cut(s) 362, 389
FaqI GGGAC 1 cut(s) 47
FatI CATG 1 cut(s) 387
FauI CCCGC 1 cut(s) 296
Fnu4HI GCNGC 1 cut(s) 301
FokI GGATG 1 cut(s) 403
FriOI GRGCYC 1 cut(s) 260
Fsp4HI GCNGC 1 cut(s) 301
FspBI CTAG 2 cut(s) 29, 147
GluI GCNGC 1 cut(s) 301
GsaI CCCAGC 1 cut(s) 68
HgaI GACGC 1 cut(s) 92
Hin1II CATG 1 cut(s) 391
HincII GTYRAC 2 cut(s) 312, 336
HindII GTYRAC 2 cut(s) 312, 336
HinfI GANTC 4 cut(s) 13, 280, 313, 424
Hpy166II GTNNAC 2 cut(s) 312, 336
Hpy188I TCNGA 2 cut(s) 18, 431
Hpy188III TCNNGA 2 cut(s) 47, 112
Hpy8I GTNNAC 2 cut(s) 312, 336
HpyAV CCTTC 1 cut(s) 84
HpyCH4III ACNGT 2 cut(s) 181, 414
HpyCH4IV ACGT 1 cut(s) 158
HpyCH4V TGCA 4 cut(s) 396, 404, 439, 444
HpyF3I CTNAG 2 cut(s) 330, 428
HpySE526I ACGT 1 cut(s) 158
Hsp92II CATG 1 cut(s) 391
Kzo9I GATC 2 cut(s) 49, 108
LmnI GCTCC 1 cut(s) 173
LpnPI CCDG 3 cut(s) 78, 109, 198
Lsp1109I GCAGC 1 cut(s) 312
LweI GCATC 2 cut(s) 133, 345
MaeI CTAG 2 cut(s) 29, 147
MaeII ACGT 1 cut(s) 158
MaeIII GTNAC 2 cut(s) 131, 154
MalI GATC 2 cut(s) 51, 110
MboI GATC 2 cut(s) 49, 108
MboII GAAGA 4 cut(s) 372, 379, 382, 385
MflI RGATCY 1 cut(s) 49
MhlI GDGCHC 1 cut(s) 260
MluCI AATT 4 cut(s) 89, 274, 293, 350
MlyI GAGTC 3 cut(s) 7, 307, 418
MmeI TCCRAC 1 cut(s) 408
MnlI CCTC 1 cut(s) 238
MroXI GAANNNNTTC 1 cut(s) 220
MseI TTAA 2 cut(s) 9, 269
MspA1I CMGCKG 1 cut(s) 303
Mva1269I GAATGC 1 cut(s) 222
NdeII GATC 2 cut(s) 49, 108
NheI GCTAGC 1 cut(s) 146
NlaIII CATG 1 cut(s) 391
NmuCI GTSAC 1 cut(s) 154
NspV TTCGAA 1 cut(s) 278
PaeR7I CTCGAG 1 cut(s) 259
PctI GAATGC 1 cut(s) 222
PdmI GAANNNNTTC 1 cut(s) 220
PfeI GAWTC 1 cut(s) 280
PkrI GCNGC 1 cut(s) 302
PleI GAGTC 3 cut(s) 7, 307, 418
PpsI GAGTC 3 cut(s) 7, 307, 418
PsiI TTATAA 1 cut(s) 362
Psp124BI GAGCTC 1 cut(s) 260
PspFI CCCAGC 1 cut(s) 64
PspXI VCTCGAGB 1 cut(s) 259
PsuI RGATCY 1 cut(s) 49
RsaI GTAC 1 cut(s) 167
RsaNI GTAC 1 cut(s) 166
SacI GAGCTC 1 cut(s) 260
SaqAI TTAA 2 cut(s) 9, 269
SatI GCNGC 1 cut(s) 301
Sau3AI GATC 2 cut(s) 49, 108
SchI GAGTC 3 cut(s) 7, 307, 418
SduI GDGCHC 1 cut(s) 260
SetI ASST 7 cut(s) 76, 161, 249, 254, 260, 331, 348
SfaNI GCATC 2 cut(s) 133, 345
Sfr274I CTCGAG 1 cut(s) 259
SfuI TTCGAA 1 cut(s) 278
SlaI CTCGAG 1 cut(s) 259
SmlI CTYRAG 2 cut(s) 253, 259
SmoI CTYRAG 2 cut(s) 253, 259
Sse9I AATT 4 cut(s) 89, 274, 293, 350
SsiI CCGC 1 cut(s) 303
SspMI CTAG 2 cut(s) 29, 147
SstI GAGCTC 1 cut(s) 260
StyI CCWWGG 1 cut(s) 169
TaaI ACNGT 2 cut(s) 181, 414
TaiI ACGT 1 cut(s) 161
TaqI TCGA 3 cut(s) 243, 260, 278
TasI AATT 4 cut(s) 89, 274, 293, 350
TfiI GAWTC 1 cut(s) 280
Tru1I TTAA 2 cut(s) 9, 269
Tru9I TTAA 2 cut(s) 9, 269
TscAI CASTG 2 cut(s) 295, 446
TseFI GTSAC 1 cut(s) 154
TseI GCWGC 1 cut(s) 300
Tsp45I GTSAC 1 cut(s) 154
TspDTI ATGAA 4 cut(s) 17, 66, 255, 380
TspRI CASTG 2 cut(s) 295, 446
XapI RAATTY 1 cut(s) 89
XhoI CTCGAG 1 cut(s) 259
XmnI GAANNNNTTC 1 cut(s) 220
XspI CTAG 2 cut(s) 29, 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.