Rmu_sc0013801.1_g000015

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013801.1
OG0000065
Physical Location & Seq
Reverse (-)
31235 .. 31873
639 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013801.1_g000015.1.cds

Sequence Viewer

Length: 639 bp
atggctgagaagatcaaccaggcttatcctcctttggcaccagcaaatggttacacaagaagtgacggagaatctttggtctctgaagatgaactcaaacgcaggaagagaatcaaattgtttacctacattggtatatttgttgtttttcagatcatagtcatgaccgtgtttggtctcactgtgatgaaagtcaagaccccaaaggtgaggttgggcgaactcatcatcacaaactttaactcagccgctgcaactccttcatttgacacaaccttcaacactcaaatcaggatcaagaacaccaactggggtccttacaaatttgatgcaggcactgtaacattcatgtaccaaggcacgcctgtggggacagtagtggtacctaagagcaaagctggaatgcgttctaccaagaagatcaatgtcgaggtgagtttaagcactgatgcattgcgaagcagttcaactcttagcagcgaattgaacagtggggtgttgacgctgactagccaagccaaattgactgggaaggtggaactgatgctcataatgaagaagaagaagtctgccaatatggactgcaccatagcttttgatttgtccacaaaaactgtcaaaagtttgcagtgcaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

212

Amino Acids

23.32

Weight (kDa)

9.91

Isoelectric Point (pI)

27.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000065)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64065
fragaria_vesca FvH4_1g02250 FvH4_4g18381 FvH4_5g03320 FvH4_5g03331 FvH4_5g03333 FvH4_5g03334 FvH4_5g03340 FvH4_5g03342 FvH4_5g03344 FvH4_5g03370 FvH4_5g03391 FvH4_5g03400 FvH4_5g03430 FvH4_5g03450 FvH4_7g30570
malus_domestica MD06G1091500.v1.1 MD06G1093100.v1.1 MD06G1093400.v1.1 MD06G1093600.v1.1 MD06G1093700.v1.1 MD06G1093800.v1.1 MD06G1094000.v1.1 MD06G1094100.v1.1 MD06G1094200.v1.1 MD06G1094300.v1.1 MD06G1094400.v1.1 MD06G1094500.v1.1 MD06G1094600.v1.1 MD07G1281600.v1.1 MD14G1113800.v1.1 MD14G1114100.v1.1 MD14G1114500.v1.1 MD14G1114600.v1.1 MD14G1114700.v1.1 MD14G1114800.v1.1 MD15G1164000.v1.1
prunus_persica Prupe.2G303300_v2.0.a1 Prupe.5G108800_v2.0.a1 Prupe.5G109700_v2.0.a1 Prupe.5G109800_v2.0.a1 Prupe.7G233300_v2.0.a1
pyrus_communis pycom01g22140 pycom02g01830 pycom03g14740 pycom06g08690 pycom06g08710 pycom06g08720 pycom06g08900 pycom06g08970 pycom06g09040 pycom06g09090 pycom06g09100 pycom06g09120 pycom06g09130 pycom06g09140
rosa_chinensis RchiOBHm_Chr1g0379411 RchiOBHm_Chr2g0087371 RchiOBHm_Chr5g0019191 RchiOBHm_Chr7g0196211 RchiOBHm_Chr7g0196241 RchiOBHm_Chr7g0196251 RchiOBHm_Chr7g0196271 RchiOBHm_Chr7g0196311 RchiOBHm_Chr7g0196321 RchiOBHm_Chr7g0196331 RchiOBHm_Chr7g0196341 RchiOBHm_Chr7g0196381 RchiOBHm_Chr7g0196391 RchiOBHm_Chr7g0196401 RchiOBHm_Chr7g0196411 RchiOBHm_Chr7g0196421 RchiOBHm_Chr7g0196431 RchiOBHm_Chr7g0196441 RchiOBHm_Chr7g0196461 RchiOBHm_Chr7g0209531 RchiOBHm_Chr7g0209541 RchiOBHm_Chr7g0209551 RchiOBHm_Chr7g0209571 RchiOBHm_Chr7g0209581 RchiOBHm_Chr7g0209591 RchiOBHm_Chr7g0211821 RchiOBHm_Chr7g0222831 RchiOBHm_Chr7g0222841 RchiOBHm_Chr7g0222851 RchiOBHm_Chr7g0222871 RchiOBHm_Chr7g0222881 RchiOBHm_Chr7g0222891 RchiOBHm_Chr7g0222901
rosa_laevigata RLG00000002015 RLG00000002016 RLG00000002017 RLG00000002018 RLG00000002019 RLG00000002020 RLG00000002021 RLG00000002023 RLG00000002024 RLG00000002963 RLG00000003114 RLG00000003115 RLG00000003117 RLG00000003119 RLG00000003121 RLG00000004013 RLG00000004015 RLG00000004016 RLG00000004017 RLG00000004018 RLG00000004019 RLG00000004020 RLG00000004021 RLG00000004022 RLG00000004023 RLG00000004024 RLG00000004025 RLG00000004026 RLG00000004027 RLG00000004029 RLG00000004030 RLG00000004032 RLG00000004033 RLG00000004034 RLG00000004035 RLG00000004037 RLG00000004038 RLG00000004043 RLG00000004044 RLG00000004046 RLG00000004047 RLG00000004048 RLG00000004050 RLG00000015860 RLG00000024213 RLG00000024219 RLG00000026400 RLG00000032427
rosa_multiflora Rmu_co8316975.1_g000001 Rmu_co8321397.1_g000001 Rmu_co8336999.1_g000001 Rmu_co8388981.1_g000001 Rmu_co8425655.1_g000002 Rmu_co8482553.1_g000001 Rmu_sc0000243.1_g000008 Rmu_sc0000243.1_g000011 Rmu_sc0000243.1_g000015 Rmu_sc0000243.1_g000019 Rmu_sc0000243.1_g000021 Rmu_sc0000243.1_g000022 Rmu_sc0000736.1_g000005 Rmu_sc0001867.1_g000001 Rmu_sc0001867.1_g000002 Rmu_sc0001867.1_g000004 Rmu_sc0001867.1_g000005 Rmu_sc0002142.1_g000002 Rmu_sc0005676.1_g000014 Rmu_sc0005993.1_g000004 Rmu_sc0005993.1_g000009 Rmu_sc0006064.1_g000004 Rmu_sc0006761.1_g000012 Rmu_sc0006761.1_g000015 Rmu_sc0007292.1_g000017 Rmu_sc0007292.1_g000022 Rmu_sc0007292.1_g000027 Rmu_sc0007292.1_g000030 Rmu_sc0008126.1_g000003 Rmu_sc0008126.1_g000004 Rmu_sc0008581.1_g000010 Rmu_sc0008581.1_g000011 Rmu_sc0008581.1_g000012 Rmu_sc0008828.1_g000008 Rmu_sc0008828.1_g000009 Rmu_sc0008884.1_g000001 Rmu_sc0008884.1_g000002 Rmu_sc0008884.1_g000007 Rmu_sc0008884.1_g000008 Rmu_sc0008884.1_g000009 Rmu_sc0009474.1_g000001 Rmu_sc0009738.1_g000002 Rmu_sc0009738.1_g000003 Rmu_sc0011534.1_g000002 Rmu_sc0011534.1_g000003 Rmu_sc0013801.1_g000001 Rmu_sc0013801.1_g000008 Rmu_sc0013801.1_g000014 Rmu_sc0013801.1_g000015 Rmu_sc0018549.1_g000001 Rmu_sc0022712.1_g000001 Rmu_sc0023035.1_g000001 Rmu_sc0030855.1_g000001 Rmu_sc0030855.1_g000002 Rmu_sc0033647.1_g000003 Rmu_sc0034421.1_g000001 Rmu_sc0038138.1_g000001
rosa_roxburghii Rroxscaffold_1G00058800 Rroxscaffold_1G00074140 Rroxscaffold_2G00153660 Rroxscaffold_3G00236440 Rroxscaffold_3G00236450 Rroxscaffold_3G00236460 Rroxscaffold_3G00236470 Rroxscaffold_3G00236480 Rroxscaffold_3G00247410 Rroxscaffold_3G00249230 Rroxscaffold_3G00249250 Rroxscaffold_3G00249260 Rroxscaffold_3G00249280 Rroxscaffold_3G00259300 Rroxscaffold_3G00259320 Rroxscaffold_3G00259330 Rroxscaffold_3G00259340 Rroxscaffold_3G00259360 Rroxscaffold_3G00259370 Rroxscaffold_3G00259380 Rroxscaffold_3G00259390 Rroxscaffold_3G00259400 Rroxscaffold_3G00259440 Rroxscaffold_3G00259450 Rroxscaffold_3G00259460 Rroxscaffold_3G00259470 Rroxscaffold_3G00259480 Rroxscaffold_3G00259500 Rroxscaffold_3G00259510 Rroxscaffold_3G00259530 Rroxscaffold_3G00259550 Rroxscaffold_3G00259560 Rroxscaffold_3G00259580 Rroxscaffold_3G00259590 Rroxscaffold_3G00259600 Rroxscaffold_3G00259630 Rroxscaffold_4G00280180
rosa_rugosa Rorug01G0411900 Rorug07G0032100 Rorug07G0032200 Rorug07G0032300 Rorug07G0032300 Rorug07G0032400 Rorug07G0032700 Rorug07G0032800 Rorug07G0032900 Rorug07G0033000 Rorug07G0033100 Rorug07G0033100 Rorug07G0033100 Rorug07G0033100 Rorug07G0033100 Rorug07G0033200 Rorug07G0033300 Rorug07G0033300 Rorug07G0033400 Rorug07G0033500 Rorug07G0033500 Rorug07G0033500 Rorug07G0033500 Rorug07G0114200 Rorug07G0114400.1 Rorug07G0128900
rosa_samantha Rh1CG404900 Rh1DG423100 Rh2BG027600 Rh5BG138600 Rh7AG157700 Rh7AG261600 Rh7BG159300 Rh7BG159400 Rh7BG255200 Rh7CG163400 Rh7CG163500 Rh7CG163600 Rh7CG163800 Rh7CG164000 Rh7CG164100 Rh7CG164200 Rh7CG164400 Rh7CG164500 Rh7CG164600 Rh7CG164700 Rh7CG164800 Rh7CG164900 Rh7CG165000 Rh7CG165100 Rh7CG165200 Rh7CG165300 Rh7CG165400 Rh7CG165500 Rh7CG165600 Rh7CG165800 Rh7CG165900 Rh7CG166000 Rh7CG166200 Rh7CG263800 Rh7CG264000 Rh7CG264100 Rh7CG264200 Rh7CG264300 Rh7CG264400 Rh7CG278200 Rh7CG374700 Rh7CG374800 Rh7CG375000 Rh7CG375100 Rh7CG375200 Rh7CG375300 Rh7DG158700 Rh7DG158800 Rh7DG268200
rosa_wichuraiana Rw1G037980 Rw2G002230 Rw5G012400 Rw7G013490 Rw7G013500 Rw7G013600 Rw7G013610 Rw7G013640 Rw7G013650 Rw7G013660 Rw7G013670 Rw7G013690 Rw7G013700 Rw7G013710 Rw7G013730 Rw7G013740 Rw7G013750 Rw7G013760 Rw7G013770 Rw7G013780 Rw7G013800 Rw7G020960 Rw7G020970 Rw7G020990 Rw7G021000 Rw7G021010 Rw7G021020 Rw7G021030 Rw7G021040 Rw7G021050 Rw7G022310 Rw7G030300 Rw7G030310 Rw7G030320 Rw7G030330 Rw7G030340 Rw7G030350 Rw7G030360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 382
AccB1I GGYRCC 2 cut(s) 37, 382
AccB7I CCANNNNNTGG 1 cut(s) 47
AciI CCGC 1 cut(s) 249
AclWI GGATC 1 cut(s) 302
AcsI RAATTY 1 cut(s) 323
AcuI CTGAAG 1 cut(s) 105
AfaI GTAC 2 cut(s) 353, 384
AfiI CCNNNNNNNGG 1 cut(s) 47
AgsI TTSAA 3 cut(s) 280, 468, 487
AjnI CCWGG 1 cut(s) 18
AleI CACNNNNGTG 1 cut(s) 365
AluBI AGCT 2 cut(s) 398, 593
AluI AGCT 2 cut(s) 398, 593
Alw26I GTCTC 2 cut(s) 85, 182
AlwI GGATC 1 cut(s) 302
AlwNI CAGNNNCTG 2 cut(s) 251, 338
ApeKI GCWGC 2 cut(s) 251, 477
ApoI RAATTY 1 cut(s) 323
Asp700I GAANNNNTTC 2 cut(s) 406, 463
Asp718I GGTACC 1 cut(s) 382
AspS9I GGNCC 1 cut(s) 314
AsuHPI GGTGA 2 cut(s) 220, 445
AvaII GGWCC 1 cut(s) 314
BanI GGYRCC 2 cut(s) 37, 382
BbvI GCAGC 2 cut(s) 238, 489
BciT130I CCWGG 1 cut(s) 20
BcoDI GTCTC 2 cut(s) 85, 182
BfaI CTAG 1 cut(s) 510
BisI GCNGC 3 cut(s) 249, 252, 478
BlsI GCNGC 3 cut(s) 250, 253, 479
Bme1390I CCNGG 1 cut(s) 20
Bme18I GGWCC 1 cut(s) 314
BmgT120I GGNCC 1 cut(s) 314
BmiI GGNNCC 3 cut(s) 39, 315, 384
BmrFI CCNGG 1 cut(s) 20
BmrI ACTGGG 2 cut(s) 319, 537
BmsI GCATC 3 cut(s) 319, 439, 534
BmuI ACTGGG 2 cut(s) 319, 537
BsaI GGTCTC 2 cut(s) 85, 182
BsaJI CCNNGG 1 cut(s) 355
Bsc4I CCNNNNNNNGG 1 cut(s) 47
Bse1I ACTGG 2 cut(s) 314, 532
Bse3DI GCAATG 1 cut(s) 452
BseBI CCWGG 1 cut(s) 20
BseDI CCNNGG 1 cut(s) 355
BseLI CCNNNNNNNGG 1 cut(s) 47
BseMI GCAATG 1 cut(s) 452
BseMII CTCAG 1 cut(s) 258
BseNI ACTGG 2 cut(s) 314, 532
BseXI GCAGC 2 cut(s) 238, 489
BsgI GTGCAG 1 cut(s) 568
BshNI GGYRCC 2 cut(s) 37, 382
BslFI GGGAC 1 cut(s) 385
BslI CCNNNNNNNGG 1 cut(s) 47
BsmAI GTCTC 2 cut(s) 85, 182
BsmFI GGGAC 1 cut(s) 385
BsmI GAATGC 1 cut(s) 408
Bso31I GGTCTC 2 cut(s) 85, 182
Bsp143I GATC 4 cut(s) 12, 153, 294, 420
BspACI CCGC 1 cut(s) 249
BspCNI CTCAG 1 cut(s) 257
BspHI TCATGA 1 cut(s) 162
BspLI GGNNCC 3 cut(s) 39, 315, 384
BspPI GGATC 1 cut(s) 302
BspT107I GGYRCC 2 cut(s) 37, 382
BspTNI GGTCTC 2 cut(s) 85, 182
BsrDI GCAATG 1 cut(s) 452
BsrI ACTGG 2 cut(s) 314, 532
BssECI CCNNGG 1 cut(s) 355
BssMI GATC 4 cut(s) 12, 153, 294, 420
BssT1I CCWWGG 1 cut(s) 355
Bst2UI CCWGG 1 cut(s) 20
Bst4CI ACNGT 6 cut(s) 169, 184, 340, 376, 491, 616
Bst6I CTCTTC 1 cut(s) 101
BstC8I GCNNGC 2 cut(s) 334, 362
BstDEI CTNAG 4 cut(s) 6, 244, 387, 473
BstKTI GATC 4 cut(s) 15, 156, 297, 423
BstMAI GTCTC 2 cut(s) 85, 182
BstMBI GATC 4 cut(s) 12, 153, 294, 420
BstNI CCWGG 1 cut(s) 20
BstSCI CCNGG 1 cut(s) 18
BstV1I GCAGC 2 cut(s) 238, 489
BtsI GCAGTG 1 cut(s) 635
BtsIMutI CAGTG 5 cut(s) 180, 336, 444, 496, 635
Cac8I GCNNGC 2 cut(s) 334, 362
CaiI CAGNNNCTG 2 cut(s) 251, 338
CciI TCATGA 1 cut(s) 162
Cfr13I GGNCC 1 cut(s) 314
CseI GACGC 1 cut(s) 511
Csp6I GTAC 2 cut(s) 352, 383
CviAII CATG 2 cut(s) 163, 349
CviJI RGCY 7 cut(s) 5, 23, 248, 398, 513, 518, 593
CviKI_1 RGCY 7 cut(s) 5, 23, 248, 398, 513, 518, 593
CviQI GTAC 2 cut(s) 352, 383
DdeI CTNAG 4 cut(s) 6, 244, 387, 473
DpnI GATC 4 cut(s) 14, 155, 296, 422
DpnII GATC 4 cut(s) 12, 153, 294, 420
Eam1104I CTCTTC 1 cut(s) 101
EarI CTCTTC 1 cut(s) 101
Eco130I CCWWGG 1 cut(s) 355
Eco31I GGTCTC 2 cut(s) 85, 182
Eco47I GGWCC 1 cut(s) 314
Eco57I CTGAAG 1 cut(s) 105
EcoO109I RGGNCCY 1 cut(s) 314
EcoRII CCWGG 1 cut(s) 18
EcoT14I CCWWGG 1 cut(s) 355
EcoT22I ATGCAT 1 cut(s) 454
ErhI CCWWGG 1 cut(s) 355
FaeI CATG 2 cut(s) 166, 352
FaiI YATR 7 cut(s) 137, 158, 164, 350, 551, 578, 590
FaqI GGGAC 1 cut(s) 385
FatI CATG 2 cut(s) 162, 348
Fnu4HI GCNGC 3 cut(s) 249, 252, 478
Fsp4HI GCNGC 3 cut(s) 249, 252, 478
FspBI CTAG 1 cut(s) 510
GluI GCNGC 3 cut(s) 249, 252, 478
HgaI GACGC 1 cut(s) 511
Hin1II CATG 2 cut(s) 166, 352
HincII GTYRAC 1 cut(s) 501
HindII GTYRAC 1 cut(s) 501
HinfI GANTC 2 cut(s) 71, 111
HphI GGTGA 2 cut(s) 220, 445
Hpy166II GTNNAC 3 cut(s) 123, 501, 606
Hpy188I TCNGA 2 cut(s) 85, 153
Hpy188III TCNNGA 4 cut(s) 163, 196, 292, 298
Hpy8I GTNNAC 3 cut(s) 123, 501, 606
HpyAV CCTTC 3 cut(s) 270, 286, 526
HpyCH4III ACNGT 6 cut(s) 169, 184, 340, 376, 491, 616
HpyCH4V TGCA 6 cut(s) 254, 332, 452, 585, 628, 633
HpyF3I CTNAG 4 cut(s) 6, 244, 387, 473
Hsp92II CATG 2 cut(s) 166, 352
KpnI GGTACC 1 cut(s) 386
Kzo9I GATC 4 cut(s) 12, 153, 294, 420
Lsp1109I GCAGC 2 cut(s) 238, 489
LweI GCATC 3 cut(s) 319, 439, 534
MaeI CTAG 1 cut(s) 510
MaeIII GTNAC 3 cut(s) 50, 62, 340
MalI GATC 4 cut(s) 14, 155, 296, 422
MboI GATC 4 cut(s) 12, 153, 294, 420
MboII GAAGA 7 cut(s) 22, 98, 118, 430, 568, 571, 574
MluCI AATT 4 cut(s) 116, 323, 482, 521
MnlI CCTC 3 cut(s) 39, 204, 424
Mph1103I ATGCAT 1 cut(s) 454
MroXI GAANNNNTTC 2 cut(s) 406, 463
MseI TTAA 2 cut(s) 240, 440
MslI CAYNNNNRTG 4 cut(s) 161, 167, 185, 365
MspA1I CMGCKG 1 cut(s) 251
MspR9I CCNGG 1 cut(s) 20
Mva1269I GAATGC 1 cut(s) 408
MvaI CCWGG 1 cut(s) 20
NdeII GATC 4 cut(s) 12, 153, 294, 420
NlaIII CATG 2 cut(s) 166, 352
NlaIV GGNNCC 3 cut(s) 39, 315, 384
NmuCI GTSAC 1 cut(s) 62
NsiI ATGCAT 1 cut(s) 454
OliI CACNNNNGTG 1 cut(s) 365
PagI TCATGA 1 cut(s) 162
PctI GAATGC 1 cut(s) 408
PdmI GAANNNNTTC 2 cut(s) 406, 463
PfeI GAWTC 2 cut(s) 71, 111
PflMI CCANNNNNTGG 1 cut(s) 47
PkrI GCNGC 3 cut(s) 250, 253, 479
PpuMI RGGWCCY 1 cut(s) 314
Psp5II RGGWCCY 1 cut(s) 314
Psp6I CCWGG 1 cut(s) 18
PspGI CCWGG 1 cut(s) 18
PspN4I GGNNCC 3 cut(s) 39, 315, 384
PspPI GGNCC 1 cut(s) 314
PspPPI RGGWCCY 1 cut(s) 314
PstNI CAGNNNCTG 2 cut(s) 251, 338
RsaI GTAC 2 cut(s) 353, 384
RsaNI GTAC 2 cut(s) 352, 383
RseI CAYNNNNRTG 4 cut(s) 161, 167, 185, 365
SaqAI TTAA 2 cut(s) 240, 440
SatI GCNGC 3 cut(s) 249, 252, 478
Sau3AI GATC 4 cut(s) 12, 153, 294, 420
Sau96I GGNCC 1 cut(s) 314
ScrFI CCNGG 1 cut(s) 20
SetI ASST 9 cut(s) 128, 210, 215, 278, 388, 400, 435, 537, 595
SfaNI GCATC 3 cut(s) 319, 439, 534
SinI GGWCC 1 cut(s) 314
SmiMI CAYNNNNRTG 4 cut(s) 161, 167, 185, 365
Sse9I AATT 4 cut(s) 116, 323, 482, 521
SsiI CCGC 1 cut(s) 249
SspMI CTAG 1 cut(s) 510
StyD4I CCNGG 1 cut(s) 18
StyI CCWWGG 1 cut(s) 355
TaaI ACNGT 6 cut(s) 169, 184, 340, 376, 491, 616
TaqI TCGA 1 cut(s) 429
TasI AATT 4 cut(s) 116, 323, 482, 521
TauI GCSGC 1 cut(s) 251
TfiI GAWTC 2 cut(s) 71, 111
Tru1I TTAA 2 cut(s) 240, 440
Tru9I TTAA 2 cut(s) 240, 440
TscAI CASTG 5 cut(s) 187, 343, 451, 496, 635
TseFI GTSAC 1 cut(s) 62
TseI GCWGC 2 cut(s) 251, 477
Tsp45I GTSAC 1 cut(s) 62
TspDTI ATGAA 5 cut(s) 105, 203, 252, 337, 569
TspGWI ACGGA 1 cut(s) 81
TspRI CASTG 5 cut(s) 187, 343, 451, 496, 635
Van91I CCANNNNNTGG 1 cut(s) 47
VpaK11BI GGWCC 1 cut(s) 314
XapI RAATTY 1 cut(s) 323
XmnI GAANNNNTTC 2 cut(s) 406, 463
XspI CTAG 1 cut(s) 510
Zsp2I ATGCAT 1 cut(s) 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.