RLG00000003117

Late embryogenesis abundant protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
44549180 .. 44549815
636 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003117

Sequence Viewer

Length: 609 bp
ATGGCAGAGAAGACCCACCAGGCTTATCCTATTGCCCCTGCAAATGGTTACACAAGAAGCGATGGAGAGTCTTTGGTCTCTGAAGATGAGCAGAAACGCAAGAAGAGAATCAAGTTATTTACCTACATTGTGATGACAGTTTTTGGTCTTACTGTGATGAAAGTGAAGACCCCCAAGGCCAGATTAGGCGAAATCAATGTCCAAACTCTCAACTCTGTCCCGGCAACACCTTCATTCGATGCAACGTTCACAACTCAGATTAGGATCAAGAACACAAATTGGGGTCCATACAAGTTTGATGCAGGTAATGCCACATTCCTGTACCAAGGAGTGTCTATTGGGCAGGTTGTGATTCCTAAGAGCAAGGCTGGAATGCGTTCAACCAAGAAGATGAATGTCGAAGTCAGTGTGAATACTAATGCTTTGCCAAGCAGTTCTACCCTTGGGAGCGAATTGAACAGTGGGGTGTTGACGCTGACCAGCAAAGTTCAATTGAAGGGAAAAGTTGAATTGATGCTCATCATGAAGAAAAACAAGAATGCAGCAATGGACTGCACCATAGCATTTGATTTGTCCTCAAAGACTGTCAAAACTTTACAATGCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

203

Amino Acids

22.13

Weight (kDa)

9.89

Isoelectric Point (pI)

30.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 87 - 186 5.6e-07 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000065)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64065
fragaria_vesca FvH4_1g02250 FvH4_4g18381 FvH4_5g03320 FvH4_5g03331 FvH4_5g03333 FvH4_5g03334 FvH4_5g03340 FvH4_5g03342 FvH4_5g03344 FvH4_5g03370 FvH4_5g03391 FvH4_5g03400 FvH4_5g03430 FvH4_5g03450 FvH4_7g30570
malus_domestica MD06G1091500.v1.1 MD06G1093100.v1.1 MD06G1093400.v1.1 MD06G1093600.v1.1 MD06G1093700.v1.1 MD06G1093800.v1.1 MD06G1094000.v1.1 MD06G1094100.v1.1 MD06G1094200.v1.1 MD06G1094300.v1.1 MD06G1094400.v1.1 MD06G1094500.v1.1 MD06G1094600.v1.1 MD07G1281600.v1.1 MD14G1113800.v1.1 MD14G1114100.v1.1 MD14G1114500.v1.1 MD14G1114600.v1.1 MD14G1114700.v1.1 MD14G1114800.v1.1 MD15G1164000.v1.1
prunus_persica Prupe.2G303300_v2.0.a1 Prupe.5G108800_v2.0.a1 Prupe.5G109700_v2.0.a1 Prupe.5G109800_v2.0.a1 Prupe.7G233300_v2.0.a1
pyrus_communis pycom01g22140 pycom02g01830 pycom03g14740 pycom06g08690 pycom06g08710 pycom06g08720 pycom06g08900 pycom06g08970 pycom06g09040 pycom06g09090 pycom06g09100 pycom06g09120 pycom06g09130 pycom06g09140
rosa_chinensis RchiOBHm_Chr1g0379411 RchiOBHm_Chr2g0087371 RchiOBHm_Chr5g0019191 RchiOBHm_Chr7g0196211 RchiOBHm_Chr7g0196241 RchiOBHm_Chr7g0196251 RchiOBHm_Chr7g0196271 RchiOBHm_Chr7g0196311 RchiOBHm_Chr7g0196321 RchiOBHm_Chr7g0196331 RchiOBHm_Chr7g0196341 RchiOBHm_Chr7g0196381 RchiOBHm_Chr7g0196391 RchiOBHm_Chr7g0196401 RchiOBHm_Chr7g0196411 RchiOBHm_Chr7g0196421 RchiOBHm_Chr7g0196431 RchiOBHm_Chr7g0196441 RchiOBHm_Chr7g0196461 RchiOBHm_Chr7g0209531 RchiOBHm_Chr7g0209541 RchiOBHm_Chr7g0209551 RchiOBHm_Chr7g0209571 RchiOBHm_Chr7g0209581 RchiOBHm_Chr7g0209591 RchiOBHm_Chr7g0211821 RchiOBHm_Chr7g0222831 RchiOBHm_Chr7g0222841 RchiOBHm_Chr7g0222851 RchiOBHm_Chr7g0222871 RchiOBHm_Chr7g0222881 RchiOBHm_Chr7g0222891 RchiOBHm_Chr7g0222901
rosa_laevigata RLG00000002015 RLG00000002016 RLG00000002017 RLG00000002018 RLG00000002019 RLG00000002020 RLG00000002021 RLG00000002023 RLG00000002024 RLG00000002963 RLG00000003114 RLG00000003115 RLG00000003117 RLG00000003119 RLG00000003121 RLG00000004013 RLG00000004015 RLG00000004016 RLG00000004017 RLG00000004018 RLG00000004019 RLG00000004020 RLG00000004021 RLG00000004022 RLG00000004023 RLG00000004024 RLG00000004025 RLG00000004026 RLG00000004027 RLG00000004029 RLG00000004030 RLG00000004032 RLG00000004033 RLG00000004034 RLG00000004035 RLG00000004037 RLG00000004038 RLG00000004043 RLG00000004044 RLG00000004046 RLG00000004047 RLG00000004048 RLG00000004050 RLG00000015860 RLG00000024213 RLG00000024219 RLG00000026400 RLG00000032427
rosa_multiflora Rmu_co8316975.1_g000001 Rmu_co8321397.1_g000001 Rmu_co8336999.1_g000001 Rmu_co8388981.1_g000001 Rmu_co8425655.1_g000002 Rmu_co8482553.1_g000001 Rmu_sc0000243.1_g000008 Rmu_sc0000243.1_g000011 Rmu_sc0000243.1_g000015 Rmu_sc0000243.1_g000019 Rmu_sc0000243.1_g000021 Rmu_sc0000243.1_g000022 Rmu_sc0000736.1_g000005 Rmu_sc0001867.1_g000001 Rmu_sc0001867.1_g000002 Rmu_sc0001867.1_g000004 Rmu_sc0001867.1_g000005 Rmu_sc0002142.1_g000002 Rmu_sc0005676.1_g000014 Rmu_sc0005993.1_g000004 Rmu_sc0005993.1_g000009 Rmu_sc0006064.1_g000004 Rmu_sc0006761.1_g000012 Rmu_sc0006761.1_g000015 Rmu_sc0007292.1_g000017 Rmu_sc0007292.1_g000022 Rmu_sc0007292.1_g000027 Rmu_sc0007292.1_g000030 Rmu_sc0008126.1_g000003 Rmu_sc0008126.1_g000004 Rmu_sc0008581.1_g000010 Rmu_sc0008581.1_g000011 Rmu_sc0008581.1_g000012 Rmu_sc0008828.1_g000008 Rmu_sc0008828.1_g000009 Rmu_sc0008884.1_g000001 Rmu_sc0008884.1_g000002 Rmu_sc0008884.1_g000007 Rmu_sc0008884.1_g000008 Rmu_sc0008884.1_g000009 Rmu_sc0009474.1_g000001 Rmu_sc0009738.1_g000002 Rmu_sc0009738.1_g000003 Rmu_sc0011534.1_g000002 Rmu_sc0011534.1_g000003 Rmu_sc0013801.1_g000001 Rmu_sc0013801.1_g000008 Rmu_sc0013801.1_g000014 Rmu_sc0013801.1_g000015 Rmu_sc0018549.1_g000001 Rmu_sc0022712.1_g000001 Rmu_sc0023035.1_g000001 Rmu_sc0030855.1_g000001 Rmu_sc0030855.1_g000002 Rmu_sc0033647.1_g000003 Rmu_sc0034421.1_g000001 Rmu_sc0038138.1_g000001
rosa_roxburghii Rroxscaffold_1G00058800 Rroxscaffold_1G00074140 Rroxscaffold_2G00153660 Rroxscaffold_3G00236440 Rroxscaffold_3G00236450 Rroxscaffold_3G00236460 Rroxscaffold_3G00236470 Rroxscaffold_3G00236480 Rroxscaffold_3G00247410 Rroxscaffold_3G00249230 Rroxscaffold_3G00249250 Rroxscaffold_3G00249260 Rroxscaffold_3G00249280 Rroxscaffold_3G00259300 Rroxscaffold_3G00259320 Rroxscaffold_3G00259330 Rroxscaffold_3G00259340 Rroxscaffold_3G00259360 Rroxscaffold_3G00259370 Rroxscaffold_3G00259380 Rroxscaffold_3G00259390 Rroxscaffold_3G00259400 Rroxscaffold_3G00259440 Rroxscaffold_3G00259450 Rroxscaffold_3G00259460 Rroxscaffold_3G00259470 Rroxscaffold_3G00259480 Rroxscaffold_3G00259500 Rroxscaffold_3G00259510 Rroxscaffold_3G00259530 Rroxscaffold_3G00259550 Rroxscaffold_3G00259560 Rroxscaffold_3G00259580 Rroxscaffold_3G00259590 Rroxscaffold_3G00259600 Rroxscaffold_3G00259630 Rroxscaffold_4G00280180
rosa_rugosa Rorug01G0411900 Rorug07G0032100 Rorug07G0032200 Rorug07G0032300 Rorug07G0032300 Rorug07G0032400 Rorug07G0032700 Rorug07G0032800 Rorug07G0032900 Rorug07G0033000 Rorug07G0033100 Rorug07G0033100 Rorug07G0033100 Rorug07G0033100 Rorug07G0033100 Rorug07G0033200 Rorug07G0033300 Rorug07G0033300 Rorug07G0033400 Rorug07G0033500 Rorug07G0033500 Rorug07G0033500 Rorug07G0033500 Rorug07G0114200 Rorug07G0114400.1 Rorug07G0128900
rosa_samantha Rh1CG404900 Rh1DG423100 Rh2BG027600 Rh5BG138600 Rh7AG157700 Rh7AG261600 Rh7BG159300 Rh7BG159400 Rh7BG255200 Rh7CG163400 Rh7CG163500 Rh7CG163600 Rh7CG163800 Rh7CG164000 Rh7CG164100 Rh7CG164200 Rh7CG164400 Rh7CG164500 Rh7CG164600 Rh7CG164700 Rh7CG164800 Rh7CG164900 Rh7CG165000 Rh7CG165100 Rh7CG165200 Rh7CG165300 Rh7CG165400 Rh7CG165500 Rh7CG165600 Rh7CG165800 Rh7CG165900 Rh7CG166000 Rh7CG166200 Rh7CG263800 Rh7CG264000 Rh7CG264100 Rh7CG264200 Rh7CG264300 Rh7CG264400 Rh7CG278200 Rh7CG374700 Rh7CG374800 Rh7CG375000 Rh7CG375100 Rh7CG375200 Rh7CG375300 Rh7DG158700 Rh7DG158800 Rh7DG268200
rosa_wichuraiana Rw1G037980 Rw2G002230 Rw5G012400 Rw7G013490 Rw7G013500 Rw7G013600 Rw7G013610 Rw7G013640 Rw7G013650 Rw7G013660 Rw7G013670 Rw7G013690 Rw7G013700 Rw7G013710 Rw7G013730 Rw7G013740 Rw7G013750 Rw7G013760 Rw7G013770 Rw7G013780 Rw7G013800 Rw7G020960 Rw7G020970 Rw7G020990 Rw7G021000 Rw7G021010 Rw7G021020 Rw7G021030 Rw7G021040 Rw7G021050 Rw7G022310 Rw7G030300 Rw7G030310 Rw7G030320 Rw7G030330 Rw7G030340 Rw7G030350 Rw7G030360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 293, 334
AclI AACGTT 1 cut(s) 245
AclWI GGATC 1 cut(s) 272
AcuI CTGAAG 1 cut(s) 102
AfaI GTAC 1 cut(s) 323
AfiI CCNNNNNNNGG 1 cut(s) 44
AgsI TTSAA 5 cut(s) 381, 457, 491, 496, 509
AjnI CCWGG 1 cut(s) 18
Alw26I GTCTC 1 cut(s) 82
AlwI GGATC 1 cut(s) 272
AoxI GGCC 1 cut(s) 177
ApeKI GCWGC 1 cut(s) 542
ArsI GACNNNNNNTTYG 2 cut(s) 183, 215
Asp700I GAANNNNTTC 1 cut(s) 376
AspS9I GGNCC 1 cut(s) 284
AsuC2I CCSGG 1 cut(s) 221
AvaII GGWCC 1 cut(s) 284
BbsI GAAGAC 2 cut(s) 17, 173
BbvI GCAGC 1 cut(s) 554
BccI CCATC 1 cut(s) 56
BciT130I CCWGG 1 cut(s) 20
BcnI CCSGG 1 cut(s) 221
BcoDI GTCTC 1 cut(s) 82
BfuAI ACCTGC 2 cut(s) 293, 334
BisI GCNGC 1 cut(s) 543
BlsI GCNGC 1 cut(s) 544
Bme1390I CCNGG 2 cut(s) 20, 221
Bme18I GGWCC 1 cut(s) 284
BmgT120I GGNCC 1 cut(s) 284
BmiI GGNNCC 1 cut(s) 285
BmrFI CCNGG 2 cut(s) 20, 221
BmsI GCATC 3 cut(s) 229, 289, 504
BpiI GAAGAC 2 cut(s) 17, 173
BpuMI CCSGG 1 cut(s) 221
BsaBI GATNNNNATC 2 cut(s) 263, 518
BsaI GGTCTC 1 cut(s) 82
BsaJI CCNNGG 3 cut(s) 174, 325, 442
Bsc4I CCNNNNNNNGG 1 cut(s) 44
Bse3DI GCAATG 1 cut(s) 552
Bse8I GATNNNNATC 2 cut(s) 263, 518
BseBI CCWGG 1 cut(s) 20
BseDI CCNNGG 3 cut(s) 174, 325, 442
BseJI GATNNNNATC 2 cut(s) 263, 518
BseLI CCNNNNNNNGG 1 cut(s) 44
BseMI GCAATG 1 cut(s) 552
BseMII CTCAG 1 cut(s) 269
BseXI GCAGC 1 cut(s) 554
BsgI GTGCAG 1 cut(s) 538
BshFI GGCC 1 cut(s) 179
BsiSI CCGG 1 cut(s) 221
BslFI GGGAC 1 cut(s) 203
BslI CCNNNNNNNGG 1 cut(s) 44
BsmAI GTCTC 1 cut(s) 82
BsmFI GGGAC 1 cut(s) 203
BsmI GAATGC 2 cut(s) 378, 544
BsnI GGCC 1 cut(s) 179
Bso31I GGTCTC 1 cut(s) 82
Bsp143I GATC 1 cut(s) 264
BspANI GGCC 1 cut(s) 179
BspCNI CTCAG 1 cut(s) 268
BspHI TCATGA 1 cut(s) 522
BspLI GGNNCC 1 cut(s) 285
BspMI ACCTGC 2 cut(s) 293, 334
BspPI GGATC 1 cut(s) 272
BspTNI GGTCTC 1 cut(s) 82
BsrDI GCAATG 1 cut(s) 552
BssECI CCNNGG 3 cut(s) 174, 325, 442
BssMI GATC 1 cut(s) 264
BssT1I CCWWGG 3 cut(s) 174, 325, 442
Bst2UI CCWGG 1 cut(s) 20
Bst4CI ACNGT 4 cut(s) 139, 154, 461, 586
Bst6I CTCTTC 1 cut(s) 98
BstAPI GCANNNNNTGC 1 cut(s) 308
BstDEI CTNAG 2 cut(s) 255, 357
BstKTI GATC 1 cut(s) 267
BstMAI GTCTC 1 cut(s) 82
BstMBI GATC 1 cut(s) 264
BstMWI GCNNNNNNNGC 1 cut(s) 308
BstNI CCWGG 1 cut(s) 20
BstSCI CCNGG 2 cut(s) 18, 219
BstV1I GCAGC 1 cut(s) 554
BstV2I GAAGAC 2 cut(s) 17, 173
BsuRI GGCC 1 cut(s) 179
BtgZI GCGATG 1 cut(s) 75
BtsIMutI CAGTG 2 cut(s) 412, 466
BveI ACCTGC 2 cut(s) 293, 334
CciI TCATGA 1 cut(s) 522
Cfr13I GGNCC 1 cut(s) 284
CseI GACGC 1 cut(s) 481
Csp6I GTAC 1 cut(s) 322
CviAII CATG 1 cut(s) 523
CviJI RGCY 3 cut(s) 23, 179, 368
CviKI_1 RGCY 3 cut(s) 23, 179, 368
CviQI GTAC 1 cut(s) 322
DdeI CTNAG 2 cut(s) 255, 357
DpnI GATC 1 cut(s) 266
DpnII GATC 1 cut(s) 264
Eam1104I CTCTTC 1 cut(s) 98
EarI CTCTTC 1 cut(s) 98
Eco130I CCWWGG 3 cut(s) 174, 325, 442
Eco31I GGTCTC 1 cut(s) 82
Eco47I GGWCC 1 cut(s) 284
Eco57I CTGAAG 1 cut(s) 102
EcoRII CCWGG 1 cut(s) 18
EcoT14I CCWWGG 3 cut(s) 174, 325, 442
ErhI CCWWGG 3 cut(s) 174, 325, 442
FaeI CATG 1 cut(s) 526
FaiI YATR 3 cut(s) 289, 524, 560
FaqI GGGAC 1 cut(s) 203
FatI CATG 1 cut(s) 522
Fnu4HI GCNGC 1 cut(s) 543
Fsp4HI GCNGC 1 cut(s) 543
GluI GCNGC 1 cut(s) 543
HaeIII GGCC 1 cut(s) 179
HapII CCGG 1 cut(s) 221
HgaI GACGC 1 cut(s) 481
Hin1II CATG 1 cut(s) 526
HincII GTYRAC 1 cut(s) 471
HindII GTYRAC 1 cut(s) 471
HinfI GANTC 3 cut(s) 68, 108, 352
HpaII CCGG 1 cut(s) 221
Hpy166II GTNNAC 2 cut(s) 249, 471
Hpy188I TCNGA 2 cut(s) 82, 258
Hpy188III TCNNGA 2 cut(s) 268, 523
Hpy8I GTNNAC 2 cut(s) 249, 471
HpyAV CCTTC 2 cut(s) 240, 490
HpyCH4III ACNGT 4 cut(s) 139, 154, 461, 586
HpyCH4IV ACGT 1 cut(s) 245
HpyCH4V TGCA 6 cut(s) 41, 242, 302, 542, 555, 603
HpyF10VI GCNNNNNNNGC 1 cut(s) 308
HpyF3I CTNAG 2 cut(s) 255, 357
HpySE526I ACGT 1 cut(s) 245
Hsp92II CATG 1 cut(s) 526
Kzo9I GATC 1 cut(s) 264
LmnI GCTCC 1 cut(s) 447
Lsp1109I GCAGC 1 cut(s) 554
LweI GCATC 3 cut(s) 229, 289, 504
MaeII ACGT 1 cut(s) 245
MaeIII GTNAC 1 cut(s) 47
MalI GATC 1 cut(s) 266
MboI GATC 1 cut(s) 264
MboII GAAGA 6 cut(s) 22, 95, 115, 178, 400, 538
MfeI CAATTG 1 cut(s) 491
MluCI AATT 4 cut(s) 277, 452, 491, 509
MlyI GAGTC 1 cut(s) 77
MnlI CCTC 1 cut(s) 586
MroXI GAANNNNTTC 1 cut(s) 376
MslI CAYNNNNRTG 1 cut(s) 131
MspI CCGG 1 cut(s) 221
MspR9I CCNGG 2 cut(s) 20, 221
MunI CAATTG 1 cut(s) 491
Mva1269I GAATGC 2 cut(s) 378, 544
MvaI CCWGG 1 cut(s) 20
MwoI GCNNNNNNNGC 1 cut(s) 308
NciI CCSGG 1 cut(s) 221
NdeII GATC 1 cut(s) 264
NlaIII CATG 1 cut(s) 526
NlaIV GGNNCC 1 cut(s) 285
PagI TCATGA 1 cut(s) 522
PctI GAATGC 2 cut(s) 378, 544
PdmI GAANNNNTTC 1 cut(s) 376
PfeI GAWTC 2 cut(s) 108, 352
PkrI GCNGC 1 cut(s) 544
PleI GAGTC 1 cut(s) 76
PpsI GAGTC 1 cut(s) 76
Psp1406I AACGTT 1 cut(s) 245
Psp6I CCWGG 1 cut(s) 18
PspGI CCWGG 1 cut(s) 18
PspN4I GGNNCC 1 cut(s) 285
PspPI GGNCC 1 cut(s) 284
RsaI GTAC 1 cut(s) 323
RsaNI GTAC 1 cut(s) 322
RseI CAYNNNNRTG 1 cut(s) 131
SatI GCNGC 1 cut(s) 543
Sau3AI GATC 1 cut(s) 264
Sau96I GGNCC 1 cut(s) 284
SchI GAGTC 1 cut(s) 77
ScrFI CCNGG 2 cut(s) 20, 221
SetI ASST 5 cut(s) 125, 232, 248, 307, 348
SfaNI GCATC 3 cut(s) 229, 289, 504
SinI GGWCC 1 cut(s) 284
SmiMI CAYNNNNRTG 1 cut(s) 131
Sse9I AATT 4 cut(s) 277, 452, 491, 509
StyD4I CCNGG 2 cut(s) 18, 219
StyI CCWWGG 3 cut(s) 174, 325, 442
TaaI ACNGT 4 cut(s) 139, 154, 461, 586
TaiI ACGT 1 cut(s) 248
TaqI TCGA 2 cut(s) 237, 399
TasI AATT 4 cut(s) 277, 452, 491, 509
TfiI GAWTC 2 cut(s) 108, 352
TscAI CASTG 2 cut(s) 412, 466
TseI GCWGC 1 cut(s) 542
TspDTI ATGAA 4 cut(s) 173, 222, 407, 539
TspRI CASTG 2 cut(s) 412, 466
VpaK11BI GGWCC 1 cut(s) 284
XmnI GAANNNNTTC 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.