MD14G1114500.v1.1

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0000065
Physical Location & Seq
Forward (+)
18540372 .. 18540962
591 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1114500.v1.1.491

Sequence Viewer

Length: 591 bp
ATGGCTTGGAAAAATAGTGATGCGGAATCTTTGCAATCTGCTGATGAGCTGAAACGCCAGAAGAGAATCAAATTGACTATATACATTGGTATTTTCATTGTGTTTCAGATCATCATCATAACCTCGATGAGTCTCACTGTGATGAAAGTCAAGACCCCGAAGGTAAGGCTAGGCAACATCAGCGTCCAAGACCTCAACTCTGTCCAGGCAACACCTTCATTCGACACAAAATTCAAAACCCAAATCAGAGTTAAGAACACAAATTTTGGTCCATACAAGTTTGATGCTAGCATTGTCACGTTTTTGTACCAAGGCGTGATTGTCGGGCAAGTTGCTATTCCAATGAGCAAGGCTGGAATGCTTTCTACCAAAAAAATTGAAGTTGAGGTGAGCTTGAGTTCAAGAGCACTGAGCAGTTCCAATCTTGGCAGGGAATTGAGCAGCGGGGTGTTGACTCTCAACAGCGCGGCTAACTTGACCGGAAAGGTTGAACTGATGTTTATAATGAAGAAGAAGAAGTCTTCCACCATGGACTGCACCATTGCATTTGATTTGTCATCAAAGAAGCTGAAAAGTTTGCAATGCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

197

Amino Acids

21.64

Weight (kDa)

10.01

Isoelectric Point (pI)

29.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000065)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64065
fragaria_vesca FvH4_1g02250 FvH4_4g18381 FvH4_5g03320 FvH4_5g03331 FvH4_5g03333 FvH4_5g03334 FvH4_5g03340 FvH4_5g03342 FvH4_5g03344 FvH4_5g03370 FvH4_5g03391 FvH4_5g03400 FvH4_5g03430 FvH4_5g03450 FvH4_7g30570
malus_domestica MD06G1091500.v1.1 MD06G1093100.v1.1 MD06G1093400.v1.1 MD06G1093600.v1.1 MD06G1093700.v1.1 MD06G1093800.v1.1 MD06G1094000.v1.1 MD06G1094100.v1.1 MD06G1094200.v1.1 MD06G1094300.v1.1 MD06G1094400.v1.1 MD06G1094500.v1.1 MD06G1094600.v1.1 MD07G1281600.v1.1 MD14G1113800.v1.1 MD14G1114100.v1.1 MD14G1114500.v1.1 MD14G1114600.v1.1 MD14G1114700.v1.1 MD14G1114800.v1.1 MD15G1164000.v1.1
prunus_persica Prupe.2G303300_v2.0.a1 Prupe.5G108800_v2.0.a1 Prupe.5G109700_v2.0.a1 Prupe.5G109800_v2.0.a1 Prupe.7G233300_v2.0.a1
pyrus_communis pycom01g22140 pycom02g01830 pycom03g14740 pycom06g08690 pycom06g08710 pycom06g08720 pycom06g08900 pycom06g08970 pycom06g09040 pycom06g09090 pycom06g09100 pycom06g09120 pycom06g09130 pycom06g09140
rosa_chinensis RchiOBHm_Chr1g0379411 RchiOBHm_Chr2g0087371 RchiOBHm_Chr5g0019191 RchiOBHm_Chr7g0196211 RchiOBHm_Chr7g0196241 RchiOBHm_Chr7g0196251 RchiOBHm_Chr7g0196271 RchiOBHm_Chr7g0196311 RchiOBHm_Chr7g0196321 RchiOBHm_Chr7g0196331 RchiOBHm_Chr7g0196341 RchiOBHm_Chr7g0196381 RchiOBHm_Chr7g0196391 RchiOBHm_Chr7g0196401 RchiOBHm_Chr7g0196411 RchiOBHm_Chr7g0196421 RchiOBHm_Chr7g0196431 RchiOBHm_Chr7g0196441 RchiOBHm_Chr7g0196461 RchiOBHm_Chr7g0209531 RchiOBHm_Chr7g0209541 RchiOBHm_Chr7g0209551 RchiOBHm_Chr7g0209571 RchiOBHm_Chr7g0209581 RchiOBHm_Chr7g0209591 RchiOBHm_Chr7g0211821 RchiOBHm_Chr7g0222831 RchiOBHm_Chr7g0222841 RchiOBHm_Chr7g0222851 RchiOBHm_Chr7g0222871 RchiOBHm_Chr7g0222881 RchiOBHm_Chr7g0222891 RchiOBHm_Chr7g0222901
rosa_laevigata RLG00000002015 RLG00000002016 RLG00000002017 RLG00000002018 RLG00000002019 RLG00000002020 RLG00000002021 RLG00000002023 RLG00000002024 RLG00000002963 RLG00000003114 RLG00000003115 RLG00000003117 RLG00000003119 RLG00000003121 RLG00000004013 RLG00000004015 RLG00000004016 RLG00000004017 RLG00000004018 RLG00000004019 RLG00000004020 RLG00000004021 RLG00000004022 RLG00000004023 RLG00000004024 RLG00000004025 RLG00000004026 RLG00000004027 RLG00000004029 RLG00000004030 RLG00000004032 RLG00000004033 RLG00000004034 RLG00000004035 RLG00000004037 RLG00000004038 RLG00000004043 RLG00000004044 RLG00000004046 RLG00000004047 RLG00000004048 RLG00000004050 RLG00000015860 RLG00000024213 RLG00000024219 RLG00000026400 RLG00000032427
rosa_multiflora Rmu_co8316975.1_g000001 Rmu_co8321397.1_g000001 Rmu_co8336999.1_g000001 Rmu_co8388981.1_g000001 Rmu_co8425655.1_g000002 Rmu_co8482553.1_g000001 Rmu_sc0000243.1_g000008 Rmu_sc0000243.1_g000011 Rmu_sc0000243.1_g000015 Rmu_sc0000243.1_g000019 Rmu_sc0000243.1_g000021 Rmu_sc0000243.1_g000022 Rmu_sc0000736.1_g000005 Rmu_sc0001867.1_g000001 Rmu_sc0001867.1_g000002 Rmu_sc0001867.1_g000004 Rmu_sc0001867.1_g000005 Rmu_sc0002142.1_g000002 Rmu_sc0005676.1_g000014 Rmu_sc0005993.1_g000004 Rmu_sc0005993.1_g000009 Rmu_sc0006064.1_g000004 Rmu_sc0006761.1_g000012 Rmu_sc0006761.1_g000015 Rmu_sc0007292.1_g000017 Rmu_sc0007292.1_g000022 Rmu_sc0007292.1_g000027 Rmu_sc0007292.1_g000030 Rmu_sc0008126.1_g000003 Rmu_sc0008126.1_g000004 Rmu_sc0008581.1_g000010 Rmu_sc0008581.1_g000011 Rmu_sc0008581.1_g000012 Rmu_sc0008828.1_g000008 Rmu_sc0008828.1_g000009 Rmu_sc0008884.1_g000001 Rmu_sc0008884.1_g000002 Rmu_sc0008884.1_g000007 Rmu_sc0008884.1_g000008 Rmu_sc0008884.1_g000009 Rmu_sc0009474.1_g000001 Rmu_sc0009738.1_g000002 Rmu_sc0009738.1_g000003 Rmu_sc0011534.1_g000002 Rmu_sc0011534.1_g000003 Rmu_sc0013801.1_g000001 Rmu_sc0013801.1_g000008 Rmu_sc0013801.1_g000014 Rmu_sc0013801.1_g000015 Rmu_sc0018549.1_g000001 Rmu_sc0022712.1_g000001 Rmu_sc0023035.1_g000001 Rmu_sc0030855.1_g000001 Rmu_sc0030855.1_g000002 Rmu_sc0033647.1_g000003 Rmu_sc0034421.1_g000001 Rmu_sc0038138.1_g000001
rosa_roxburghii Rroxscaffold_1G00058800 Rroxscaffold_1G00074140 Rroxscaffold_2G00153660 Rroxscaffold_3G00236440 Rroxscaffold_3G00236450 Rroxscaffold_3G00236460 Rroxscaffold_3G00236470 Rroxscaffold_3G00236480 Rroxscaffold_3G00247410 Rroxscaffold_3G00249230 Rroxscaffold_3G00249250 Rroxscaffold_3G00249260 Rroxscaffold_3G00249280 Rroxscaffold_3G00259300 Rroxscaffold_3G00259320 Rroxscaffold_3G00259330 Rroxscaffold_3G00259340 Rroxscaffold_3G00259360 Rroxscaffold_3G00259370 Rroxscaffold_3G00259380 Rroxscaffold_3G00259390 Rroxscaffold_3G00259400 Rroxscaffold_3G00259440 Rroxscaffold_3G00259450 Rroxscaffold_3G00259460 Rroxscaffold_3G00259470 Rroxscaffold_3G00259480 Rroxscaffold_3G00259500 Rroxscaffold_3G00259510 Rroxscaffold_3G00259530 Rroxscaffold_3G00259550 Rroxscaffold_3G00259560 Rroxscaffold_3G00259580 Rroxscaffold_3G00259590 Rroxscaffold_3G00259600 Rroxscaffold_3G00259630 Rroxscaffold_4G00280180
rosa_rugosa Rorug01G0411900 Rorug07G0032100 Rorug07G0032200 Rorug07G0032300 Rorug07G0032300 Rorug07G0032400 Rorug07G0032700 Rorug07G0032800 Rorug07G0032900 Rorug07G0033000 Rorug07G0033100 Rorug07G0033100 Rorug07G0033100 Rorug07G0033100 Rorug07G0033100 Rorug07G0033200 Rorug07G0033300 Rorug07G0033300 Rorug07G0033400 Rorug07G0033500 Rorug07G0033500 Rorug07G0033500 Rorug07G0033500 Rorug07G0114200 Rorug07G0114400.1 Rorug07G0128900
rosa_samantha Rh1CG404900 Rh1DG423100 Rh2BG027600 Rh5BG138600 Rh7AG157700 Rh7AG261600 Rh7BG159300 Rh7BG159400 Rh7BG255200 Rh7CG163400 Rh7CG163500 Rh7CG163600 Rh7CG163800 Rh7CG164000 Rh7CG164100 Rh7CG164200 Rh7CG164400 Rh7CG164500 Rh7CG164600 Rh7CG164700 Rh7CG164800 Rh7CG164900 Rh7CG165000 Rh7CG165100 Rh7CG165200 Rh7CG165300 Rh7CG165400 Rh7CG165500 Rh7CG165600 Rh7CG165800 Rh7CG165900 Rh7CG166000 Rh7CG166200 Rh7CG263800 Rh7CG264000 Rh7CG264100 Rh7CG264200 Rh7CG264300 Rh7CG264400 Rh7CG278200 Rh7CG374700 Rh7CG374800 Rh7CG375000 Rh7CG375100 Rh7CG375200 Rh7CG375300 Rh7DG158700 Rh7DG158800 Rh7DG268200
rosa_wichuraiana Rw1G037980 Rw2G002230 Rw5G012400 Rw7G013490 Rw7G013500 Rw7G013600 Rw7G013610 Rw7G013640 Rw7G013650 Rw7G013660 Rw7G013670 Rw7G013690 Rw7G013700 Rw7G013710 Rw7G013730 Rw7G013740 Rw7G013750 Rw7G013760 Rw7G013770 Rw7G013780 Rw7G013800 Rw7G020960 Rw7G020970 Rw7G020990 Rw7G021000 Rw7G021010 Rw7G021020 Rw7G021030 Rw7G021040 Rw7G021050 Rw7G022310 Rw7G030300 Rw7G030310 Rw7G030320 Rw7G030330 Rw7G030340 Rw7G030350 Rw7G030360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 503
AccII CGCG 1 cut(s) 467
AciI CCGC 3 cut(s) 23, 444, 467
AcsI RAATTY 2 cut(s) 230, 262
AfaI GTAC 1 cut(s) 308
AgsI TTSAA 4 cut(s) 235, 380, 402, 491
AjnI CCWGG 1 cut(s) 204
AluBI AGCT 3 cut(s) 49, 393, 568
AluI AGCT 3 cut(s) 49, 393, 568
Alw21I GWGCWC 1 cut(s) 409
Alw26I GTCTC 1 cut(s) 137
ApeKI GCWGC 1 cut(s) 441
ApoI RAATTY 2 cut(s) 230, 262
Asp700I GAANNNNTTC 1 cut(s) 361
AspLEI GCGC 1 cut(s) 467
AspS9I GGNCC 1 cut(s) 269
AsuHPI GGTGA 1 cut(s) 400
AsuNHI GCTAGC 1 cut(s) 287
AvaII GGWCC 1 cut(s) 269
BbsI GAAGAC 1 cut(s) 513
Bbv12I GWGCWC 1 cut(s) 409
BbvI GCAGC 1 cut(s) 453
BciT130I CCWGG 1 cut(s) 206
BcoDI GTCTC 1 cut(s) 137
BfaI CTAG 2 cut(s) 170, 288
BisI GCNGC 2 cut(s) 442, 468
BlsI GCNGC 2 cut(s) 443, 469
Bme1390I CCNGG 1 cut(s) 206
Bme18I GGWCC 1 cut(s) 269
BmgT120I GGNCC 1 cut(s) 269
BmrFI CCNGG 1 cut(s) 206
BmsI GCATC 2 cut(s) 10, 274
BmtI GCTAGC 1 cut(s) 291
BpiI GAAGAC 1 cut(s) 513
BpuEI CTTGAG 1 cut(s) 415
BsaBI GATNNNNATC 1 cut(s) 113
BsaJI CCNNGG 2 cut(s) 310, 528
BsaWI WCCGGW 1 cut(s) 479
Bse3DI GCAATG 2 cut(s) 540, 587
Bse8I GATNNNNATC 1 cut(s) 113
BseBI CCWGG 1 cut(s) 206
BseDI CCNNGG 2 cut(s) 310, 528
BseJI GATNNNNATC 1 cut(s) 113
BseMI GCAATG 2 cut(s) 540, 587
BseMII CTCAG 1 cut(s) 401
BseXI GCAGC 1 cut(s) 453
BsgI GTGCAG 1 cut(s) 520
Bsh1236I CGCG 1 cut(s) 467
BsiHKAI GWGCWC 1 cut(s) 409
BsiSI CCGG 1 cut(s) 480
BsmAI GTCTC 1 cut(s) 137
BsmI GAATGC 1 cut(s) 363
Bsp1286I GDGCHC 1 cut(s) 409
Bsp143I GATC 1 cut(s) 108
Bsp19I CCATGG 1 cut(s) 528
BspACI CCGC 3 cut(s) 23, 444, 467
BspCNI CTCAG 1 cut(s) 402
BspFNI CGCG 1 cut(s) 467
BspOI GCTAGC 1 cut(s) 291
BsrDI GCAATG 2 cut(s) 540, 587
BssECI CCNNGG 2 cut(s) 310, 528
BssMI GATC 1 cut(s) 108
BssT1I CCWWGG 2 cut(s) 310, 528
Bst2UI CCWGG 1 cut(s) 206
Bst4CI ACNGT 1 cut(s) 139
Bst6I CTCTTC 1 cut(s) 56
BstC8I GCNNGC 1 cut(s) 289
BstDEI CTNAG 1 cut(s) 410
BstDSI CCRYGG 1 cut(s) 528
BstFNI CGCG 1 cut(s) 467
BstHHI GCGC 1 cut(s) 467
BstKTI GATC 1 cut(s) 111
BstMAI GTCTC 1 cut(s) 137
BstMBI GATC 1 cut(s) 108
BstMWI GCNNNNNNNGC 1 cut(s) 180
BstNI CCWGG 1 cut(s) 206
BstSCI CCNGG 1 cut(s) 204
BstUI CGCG 1 cut(s) 467
BstV1I GCAGC 1 cut(s) 453
BstV2I GAAGAC 1 cut(s) 513
BtgI CCRYGG 1 cut(s) 528
BtsIMutI CAGTG 2 cut(s) 135, 407
Cac8I GCNNGC 1 cut(s) 289
CfoI GCGC 1 cut(s) 467
Cfr13I GGNCC 1 cut(s) 269
CseI GACGC 1 cut(s) 172
Csp6I GTAC 1 cut(s) 307
CviAII CATG 1 cut(s) 529
CviJI RGCY 7 cut(s) 5, 49, 169, 353, 393, 470, 568
CviKI_1 RGCY 7 cut(s) 5, 49, 169, 353, 393, 470, 568
CviQI GTAC 1 cut(s) 307
DdeI CTNAG 1 cut(s) 410
DpnI GATC 1 cut(s) 110
DpnII GATC 1 cut(s) 108
Eam1104I CTCTTC 1 cut(s) 56
EarI CTCTTC 1 cut(s) 56
Eco130I CCWWGG 2 cut(s) 310, 528
Eco47I GGWCC 1 cut(s) 269
EcoRII CCWGG 1 cut(s) 204
EcoT14I CCWWGG 2 cut(s) 310, 528
ErhI CCWWGG 2 cut(s) 310, 528
FaeI CATG 1 cut(s) 532
FaiI YATR 6 cut(s) 80, 82, 119, 274, 503, 530
FatI CATG 1 cut(s) 528
FauI CCCGC 1 cut(s) 437
Fnu4HI GCNGC 2 cut(s) 442, 468
Fsp4HI GCNGC 2 cut(s) 442, 468
FspBI CTAG 2 cut(s) 170, 288
GlaI GCGC 1 cut(s) 466
GluI GCNGC 2 cut(s) 442, 468
HapII CCGG 1 cut(s) 480
HgaI GACGC 1 cut(s) 172
HhaI GCGC 1 cut(s) 467
Hin1II CATG 1 cut(s) 532
Hin6I GCGC 1 cut(s) 465
HinP1I GCGC 1 cut(s) 465
HincII GTYRAC 1 cut(s) 453
HindII GTYRAC 1 cut(s) 453
HinfI GANTC 4 cut(s) 26, 66, 130, 454
HpaII CCGG 1 cut(s) 480
HphI GGTGA 1 cut(s) 400
Hpy166II GTNNAC 1 cut(s) 453
Hpy188I TCNGA 2 cut(s) 108, 248
Hpy188III TCNNGA 2 cut(s) 151, 402
Hpy8I GTNNAC 1 cut(s) 453
HpyAV CCTTC 2 cut(s) 154, 225
HpyCH4III ACNGT 1 cut(s) 139
HpyCH4IV ACGT 1 cut(s) 299
HpyCH4V TGCA 5 cut(s) 34, 537, 545, 580, 585
HpyF10VI GCNNNNNNNGC 1 cut(s) 180
HpyF3I CTNAG 1 cut(s) 410
HpySE526I ACGT 1 cut(s) 299
Hsp92II CATG 1 cut(s) 532
HspAI GCGC 1 cut(s) 465
Kzo9I GATC 1 cut(s) 108
LpnPI CCDG 6 cut(s) 71, 191, 218, 339, 415, 493
Lsp1109I GCAGC 1 cut(s) 453
LweI GCATC 2 cut(s) 10, 274
MaeI CTAG 2 cut(s) 170, 288
MaeII ACGT 1 cut(s) 299
MaeIII GTNAC 1 cut(s) 295
MalI GATC 1 cut(s) 110
MboI GATC 1 cut(s) 108
MboII GAAGA 5 cut(s) 73, 513, 520, 523, 526
MhlI GDGCHC 1 cut(s) 409
MluCI AATT 5 cut(s) 71, 230, 262, 375, 434
MlyI GAGTC 2 cut(s) 139, 448
MnlI CCTC 3 cut(s) 133, 203, 379
MroXI GAANNNNTTC 1 cut(s) 361
MseI TTAA 1 cut(s) 252
MslI CAYNNNNRTG 1 cut(s) 140
MspA1I CMGCKG 1 cut(s) 444
MspI CCGG 1 cut(s) 480
MspR9I CCNGG 1 cut(s) 206
Mva1269I GAATGC 1 cut(s) 363
MvaI CCWGG 1 cut(s) 206
MvnI CGCG 1 cut(s) 467
MwoI GCNNNNNNNGC 1 cut(s) 180
NcoI CCATGG 1 cut(s) 528
NdeII GATC 1 cut(s) 108
NheI GCTAGC 1 cut(s) 287
NlaIII CATG 1 cut(s) 532
NmuCI GTSAC 1 cut(s) 295
PctI GAATGC 1 cut(s) 363
PdmI GAANNNNTTC 1 cut(s) 361
PfeI GAWTC 2 cut(s) 26, 66
PkrI GCNGC 2 cut(s) 443, 469
PleI GAGTC 2 cut(s) 138, 448
PpsI GAGTC 2 cut(s) 138, 448
PsiI TTATAA 1 cut(s) 503
Psp6I CCWGG 1 cut(s) 204
PspGI CCWGG 1 cut(s) 204
PspPI GGNCC 1 cut(s) 269
RsaI GTAC 1 cut(s) 308
RsaNI GTAC 1 cut(s) 307
RseI CAYNNNNRTG 1 cut(s) 140
SaqAI TTAA 1 cut(s) 252
SatI GCNGC 2 cut(s) 442, 468
Sau3AI GATC 1 cut(s) 108
Sau96I GGNCC 1 cut(s) 269
SchI GAGTC 2 cut(s) 139, 448
ScrFI CCNGG 1 cut(s) 206
SduI GDGCHC 1 cut(s) 409
SfaNI GCATC 2 cut(s) 10, 274
SinI GGWCC 1 cut(s) 269
SmiMI CAYNNNNRTG 1 cut(s) 140
SmlI CTYRAG 1 cut(s) 394
SmoI CTYRAG 1 cut(s) 394
Sse9I AATT 5 cut(s) 71, 230, 262, 375, 434
SsiI CCGC 3 cut(s) 23, 444, 467
SspMI CTAG 2 cut(s) 170, 288
StyD4I CCNGG 1 cut(s) 204
StyI CCWWGG 2 cut(s) 310, 528
TaaI ACNGT 1 cut(s) 139
TaiI ACGT 1 cut(s) 302
TaqI TCGA 2 cut(s) 125, 222
TasI AATT 5 cut(s) 71, 230, 262, 375, 434
TauI GCSGC 1 cut(s) 470
TfiI GAWTC 2 cut(s) 26, 66
Tru1I TTAA 1 cut(s) 252
Tru9I TTAA 1 cut(s) 252
TscAI CASTG 2 cut(s) 142, 414
TseFI GTSAC 1 cut(s) 295
TseI GCWGC 1 cut(s) 441
Tsp45I GTSAC 1 cut(s) 295
TspDTI ATGAA 4 cut(s) 85, 158, 207, 521
TspRI CASTG 2 cut(s) 142, 414
VpaK11BI GGWCC 1 cut(s) 269
XapI RAATTY 2 cut(s) 230, 262
XmnI GAANNNNTTC 1 cut(s) 361
XspI CTAG 2 cut(s) 170, 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.