Rmu_sc0008828.1_g000008

Late embryogenesis abundant protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008828.1
Physical Location & Seq
Forward (+)
29977 .. 30600
624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008828.1_g000008.1.cds

Sequence Viewer

Length: 537 bp
atggttgagaagaaccaacagttgcttgcatcagcaaatggctactccagaaaggatgaagaatctgccaccttgcaatccgaagatgagctcaaaagccaaaagagaatcaaattggctatgttaggtgccatcaacgtccaaagcctcaactctgtccttgccacaccttcatttgacacaacccaaatcaaggtcaagaacacaaactggggaccccataagttcgatgcaagcattgcaacgttcatggaccaaggcgtggctgtggagcaagttagtattcctaagagtaaggctggcatgcattccaccaaaaagattgatgtcacagtgagtttgaattccaatggattgccaagctcaaatctcggaagtgatctgaatggtgggatcttgaccctcggcagccaagctaaattgactggaaaggttgaactcatgttcatcatgaagaaaaagaagtcggctaatatggactgtactatagcatttaatctatcctcaaaggcagtccaaactttacaatgcaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

178

Amino Acids

19.18

Weight (kDa)

9.44

Isoelectric Point (pI)

31.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000065)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64065
fragaria_vesca FvH4_1g02250 FvH4_4g18381 FvH4_5g03320 FvH4_5g03331 FvH4_5g03333 FvH4_5g03334 FvH4_5g03340 FvH4_5g03342 FvH4_5g03344 FvH4_5g03370 FvH4_5g03391 FvH4_5g03400 FvH4_5g03430 FvH4_5g03450 FvH4_7g30570
malus_domestica MD06G1091500.v1.1 MD06G1093100.v1.1 MD06G1093400.v1.1 MD06G1093600.v1.1 MD06G1093700.v1.1 MD06G1093800.v1.1 MD06G1094000.v1.1 MD06G1094100.v1.1 MD06G1094200.v1.1 MD06G1094300.v1.1 MD06G1094400.v1.1 MD06G1094500.v1.1 MD06G1094600.v1.1 MD07G1281600.v1.1 MD14G1113800.v1.1 MD14G1114100.v1.1 MD14G1114500.v1.1 MD14G1114600.v1.1 MD14G1114700.v1.1 MD14G1114800.v1.1 MD15G1164000.v1.1
prunus_persica Prupe.2G303300_v2.0.a1 Prupe.5G108800_v2.0.a1 Prupe.5G109700_v2.0.a1 Prupe.5G109800_v2.0.a1 Prupe.7G233300_v2.0.a1
pyrus_communis pycom01g22140 pycom02g01830 pycom03g14740 pycom06g08690 pycom06g08710 pycom06g08720 pycom06g08900 pycom06g08970 pycom06g09040 pycom06g09090 pycom06g09100 pycom06g09120 pycom06g09130 pycom06g09140
rosa_chinensis RchiOBHm_Chr1g0379411 RchiOBHm_Chr2g0087371 RchiOBHm_Chr5g0019191 RchiOBHm_Chr7g0196211 RchiOBHm_Chr7g0196241 RchiOBHm_Chr7g0196251 RchiOBHm_Chr7g0196271 RchiOBHm_Chr7g0196311 RchiOBHm_Chr7g0196321 RchiOBHm_Chr7g0196331 RchiOBHm_Chr7g0196341 RchiOBHm_Chr7g0196381 RchiOBHm_Chr7g0196391 RchiOBHm_Chr7g0196401 RchiOBHm_Chr7g0196411 RchiOBHm_Chr7g0196421 RchiOBHm_Chr7g0196431 RchiOBHm_Chr7g0196441 RchiOBHm_Chr7g0196461 RchiOBHm_Chr7g0209531 RchiOBHm_Chr7g0209541 RchiOBHm_Chr7g0209551 RchiOBHm_Chr7g0209571 RchiOBHm_Chr7g0209581 RchiOBHm_Chr7g0209591 RchiOBHm_Chr7g0211821 RchiOBHm_Chr7g0222831 RchiOBHm_Chr7g0222841 RchiOBHm_Chr7g0222851 RchiOBHm_Chr7g0222871 RchiOBHm_Chr7g0222881 RchiOBHm_Chr7g0222891 RchiOBHm_Chr7g0222901
rosa_laevigata RLG00000002015 RLG00000002016 RLG00000002017 RLG00000002018 RLG00000002019 RLG00000002020 RLG00000002021 RLG00000002023 RLG00000002024 RLG00000002963 RLG00000003114 RLG00000003115 RLG00000003117 RLG00000003119 RLG00000003121 RLG00000004013 RLG00000004015 RLG00000004016 RLG00000004017 RLG00000004018 RLG00000004019 RLG00000004020 RLG00000004021 RLG00000004022 RLG00000004023 RLG00000004024 RLG00000004025 RLG00000004026 RLG00000004027 RLG00000004029 RLG00000004030 RLG00000004032 RLG00000004033 RLG00000004034 RLG00000004035 RLG00000004037 RLG00000004038 RLG00000004043 RLG00000004044 RLG00000004046 RLG00000004047 RLG00000004048 RLG00000004050 RLG00000015860 RLG00000024213 RLG00000024219 RLG00000026400 RLG00000032427
rosa_multiflora Rmu_co8316975.1_g000001 Rmu_co8321397.1_g000001 Rmu_co8336999.1_g000001 Rmu_co8388981.1_g000001 Rmu_co8425655.1_g000002 Rmu_co8482553.1_g000001 Rmu_sc0000243.1_g000008 Rmu_sc0000243.1_g000011 Rmu_sc0000243.1_g000015 Rmu_sc0000243.1_g000019 Rmu_sc0000243.1_g000021 Rmu_sc0000243.1_g000022 Rmu_sc0000736.1_g000005 Rmu_sc0001867.1_g000001 Rmu_sc0001867.1_g000002 Rmu_sc0001867.1_g000004 Rmu_sc0001867.1_g000005 Rmu_sc0002142.1_g000002 Rmu_sc0005676.1_g000014 Rmu_sc0005993.1_g000004 Rmu_sc0005993.1_g000009 Rmu_sc0006064.1_g000004 Rmu_sc0006761.1_g000012 Rmu_sc0006761.1_g000015 Rmu_sc0007292.1_g000017 Rmu_sc0007292.1_g000022 Rmu_sc0007292.1_g000027 Rmu_sc0007292.1_g000030 Rmu_sc0008126.1_g000003 Rmu_sc0008126.1_g000004 Rmu_sc0008581.1_g000010 Rmu_sc0008581.1_g000011 Rmu_sc0008581.1_g000012 Rmu_sc0008828.1_g000008 Rmu_sc0008828.1_g000009 Rmu_sc0008884.1_g000001 Rmu_sc0008884.1_g000002 Rmu_sc0008884.1_g000007 Rmu_sc0008884.1_g000008 Rmu_sc0008884.1_g000009 Rmu_sc0009474.1_g000001 Rmu_sc0009738.1_g000002 Rmu_sc0009738.1_g000003 Rmu_sc0011534.1_g000002 Rmu_sc0011534.1_g000003 Rmu_sc0013801.1_g000001 Rmu_sc0013801.1_g000008 Rmu_sc0013801.1_g000014 Rmu_sc0013801.1_g000015 Rmu_sc0018549.1_g000001 Rmu_sc0022712.1_g000001 Rmu_sc0023035.1_g000001 Rmu_sc0030855.1_g000001 Rmu_sc0030855.1_g000002 Rmu_sc0033647.1_g000003 Rmu_sc0034421.1_g000001 Rmu_sc0038138.1_g000001
rosa_roxburghii Rroxscaffold_1G00058800 Rroxscaffold_1G00074140 Rroxscaffold_2G00153660 Rroxscaffold_3G00236440 Rroxscaffold_3G00236450 Rroxscaffold_3G00236460 Rroxscaffold_3G00236470 Rroxscaffold_3G00236480 Rroxscaffold_3G00247410 Rroxscaffold_3G00249230 Rroxscaffold_3G00249250 Rroxscaffold_3G00249260 Rroxscaffold_3G00249280 Rroxscaffold_3G00259300 Rroxscaffold_3G00259320 Rroxscaffold_3G00259330 Rroxscaffold_3G00259340 Rroxscaffold_3G00259360 Rroxscaffold_3G00259370 Rroxscaffold_3G00259380 Rroxscaffold_3G00259390 Rroxscaffold_3G00259400 Rroxscaffold_3G00259440 Rroxscaffold_3G00259450 Rroxscaffold_3G00259460 Rroxscaffold_3G00259470 Rroxscaffold_3G00259480 Rroxscaffold_3G00259500 Rroxscaffold_3G00259510 Rroxscaffold_3G00259530 Rroxscaffold_3G00259550 Rroxscaffold_3G00259560 Rroxscaffold_3G00259580 Rroxscaffold_3G00259590 Rroxscaffold_3G00259600 Rroxscaffold_3G00259630 Rroxscaffold_4G00280180
rosa_rugosa Rorug01G0411900 Rorug07G0032100 Rorug07G0032200 Rorug07G0032300 Rorug07G0032300 Rorug07G0032400 Rorug07G0032700 Rorug07G0032800 Rorug07G0032900 Rorug07G0033000 Rorug07G0033100 Rorug07G0033100 Rorug07G0033100 Rorug07G0033100 Rorug07G0033100 Rorug07G0033200 Rorug07G0033300 Rorug07G0033300 Rorug07G0033400 Rorug07G0033500 Rorug07G0033500 Rorug07G0033500 Rorug07G0033500 Rorug07G0114200 Rorug07G0114400.1 Rorug07G0128900
rosa_samantha Rh1CG404900 Rh1DG423100 Rh2BG027600 Rh5BG138600 Rh7AG157700 Rh7AG261600 Rh7BG159300 Rh7BG159400 Rh7BG255200 Rh7CG163400 Rh7CG163500 Rh7CG163600 Rh7CG163800 Rh7CG164000 Rh7CG164100 Rh7CG164200 Rh7CG164400 Rh7CG164500 Rh7CG164600 Rh7CG164700 Rh7CG164800 Rh7CG164900 Rh7CG165000 Rh7CG165100 Rh7CG165200 Rh7CG165300 Rh7CG165400 Rh7CG165500 Rh7CG165600 Rh7CG165800 Rh7CG165900 Rh7CG166000 Rh7CG166200 Rh7CG263800 Rh7CG264000 Rh7CG264100 Rh7CG264200 Rh7CG264300 Rh7CG264400 Rh7CG278200 Rh7CG374700 Rh7CG374800 Rh7CG375000 Rh7CG375100 Rh7CG375200 Rh7CG375300 Rh7DG158700 Rh7DG158800 Rh7DG268200
rosa_wichuraiana Rw1G037980 Rw2G002230 Rw5G012400 Rw7G013490 Rw7G013500 Rw7G013600 Rw7G013610 Rw7G013640 Rw7G013650 Rw7G013660 Rw7G013670 Rw7G013690 Rw7G013700 Rw7G013710 Rw7G013730 Rw7G013740 Rw7G013750 Rw7G013760 Rw7G013770 Rw7G013780 Rw7G013800 Rw7G020960 Rw7G020970 Rw7G020990 Rw7G021000 Rw7G021010 Rw7G021020 Rw7G021030 Rw7G021040 Rw7G021050 Rw7G022310 Rw7G030300 Rw7G030310 Rw7G030320 Rw7G030330 Rw7G030340 Rw7G030350 Rw7G030360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 128
AccB7I CCANNNNNTGG 1 cut(s) 262
AclI AACGTT 1 cut(s) 245
AclWI GGATC 1 cut(s) 401
AcsI RAATTY 1 cut(s) 343
AfaI GTAC 1 cut(s) 484
AfiI CCNNNNNNNGG 2 cut(s) 193, 262
AgsI TTSAA 2 cut(s) 343, 437
AluBI AGCT 3 cut(s) 91, 363, 416
AluI AGCT 3 cut(s) 91, 363, 416
Alw21I GWGCWC 1 cut(s) 93
AlwI GGATC 1 cut(s) 401
ApeKI GCWGC 1 cut(s) 408
ApoI RAATTY 1 cut(s) 343
AspS9I GGNCC 2 cut(s) 215, 253
AvaII GGWCC 2 cut(s) 215, 253
BanI GGYRCC 1 cut(s) 128
BanII GRGCYC 1 cut(s) 93
Bbv12I GWGCWC 1 cut(s) 93
BbvI GCAGC 1 cut(s) 420
BccI CCATC 1 cut(s) 140
BfmI CTRYAG 1 cut(s) 486
BisI GCNGC 1 cut(s) 409
BlsI GCNGC 1 cut(s) 410
Bme18I GGWCC 2 cut(s) 215, 253
BmgT120I GGNCC 2 cut(s) 215, 253
BmiI GGNNCC 3 cut(s) 130, 216, 217
BmrI ACTGGG 1 cut(s) 220
BmsI GCATC 2 cut(s) 38, 220
BmuI ACTGGG 1 cut(s) 220
BpmI CTGGAG 1 cut(s) 31
BsaJI CCNNGG 2 cut(s) 256, 403
Bsc4I CCNNNNNNNGG 2 cut(s) 193, 262
Bse1I ACTGG 2 cut(s) 215, 430
Bse3DI GCAATG 1 cut(s) 237
BseDI CCNNGG 2 cut(s) 256, 403
BseGI GGATG 1 cut(s) 61
BseLI CCNNNNNNNGG 2 cut(s) 193, 262
BseMI GCAATG 1 cut(s) 237
BseNI ACTGG 2 cut(s) 215, 430
BseXI GCAGC 1 cut(s) 420
BshNI GGYRCC 1 cut(s) 128
BsiHKAI GWGCWC 1 cut(s) 93
BslFI GGGAC 1 cut(s) 228
BslI CCNNNNNNNGG 2 cut(s) 193, 262
BsmFI GGGAC 1 cut(s) 228
BsmI GAATGC 1 cut(s) 307
Bsp1286I GDGCHC 1 cut(s) 93
Bsp143I GATC 2 cut(s) 379, 393
BspHI TCATGA 1 cut(s) 450
BspLI GGNNCC 3 cut(s) 130, 216, 217
BspPI GGATC 1 cut(s) 401
BspT107I GGYRCC 1 cut(s) 128
BsrDI GCAATG 1 cut(s) 237
BsrI ACTGG 2 cut(s) 215, 430
BssECI CCNNGG 2 cut(s) 256, 403
BssMI GATC 2 cut(s) 379, 393
BssT1I CCWWGG 1 cut(s) 256
Bst4CI ACNGT 3 cut(s) 21, 334, 482
BstAPI GCANNNNNTGC 1 cut(s) 239
BstC8I GCNNGC 4 cut(s) 27, 235, 301, 305
BstDEI CTNAG 1 cut(s) 288
BstF5I GGATG 1 cut(s) 61
BstKTI GATC 2 cut(s) 382, 396
BstMBI GATC 2 cut(s) 379, 393
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstNSI RCATGY 1 cut(s) 307
BstSFI CTRYAG 1 cut(s) 486
BstV1I GCAGC 1 cut(s) 420
BstX2I RGATCY 1 cut(s) 393
BstYI RGATCY 1 cut(s) 393
BtsCI GGATG 1 cut(s) 61
BtsIMutI CAGTG 1 cut(s) 339
Cac8I GCNNGC 4 cut(s) 27, 235, 301, 305
CciI TCATGA 1 cut(s) 450
Cfr13I GGNCC 2 cut(s) 215, 253
Csp6I GTAC 1 cut(s) 483
CviAII CATG 4 cut(s) 250, 304, 442, 451
CviQI GTAC 1 cut(s) 483
DdeI CTNAG 1 cut(s) 288
DpnI GATC 2 cut(s) 381, 395
DpnII GATC 2 cut(s) 379, 393
Ecl136II GAGCTC 1 cut(s) 91
Eco130I CCWWGG 1 cut(s) 256
Eco24I GRGCYC 1 cut(s) 93
Eco47I GGWCC 2 cut(s) 215, 253
Eco53kI GAGCTC 1 cut(s) 91
EcoICRI GAGCTC 1 cut(s) 91
EcoO109I RGGNCCY 1 cut(s) 215
EcoRI GAATTC 1 cut(s) 343
EcoT14I CCWWGG 1 cut(s) 256
EcoT22I ATGCAT 1 cut(s) 309
EcoT38I GRGCYC 1 cut(s) 93
ErhI CCWWGG 1 cut(s) 256
FaeI CATG 4 cut(s) 253, 307, 445, 454
FaiI YATR 8 cut(s) 122, 222, 251, 305, 443, 452, 476, 488
FaqI GGGAC 1 cut(s) 228
FatI CATG 4 cut(s) 249, 303, 441, 450
Fnu4HI GCNGC 1 cut(s) 409
FokI GGATG 1 cut(s) 68
FriOI GRGCYC 1 cut(s) 93
Fsp4HI GCNGC 1 cut(s) 409
GluI GCNGC 1 cut(s) 409
GsuI CTGGAG 1 cut(s) 31
Hin1II CATG 4 cut(s) 253, 307, 445, 454
HinfI GANTC 2 cut(s) 62, 108
Hpy188I TCNGA 3 cut(s) 82, 374, 384
Hpy188III TCNNGA 4 cut(s) 48, 199, 397, 451
HpyAV CCTTC 1 cut(s) 180
HpyCH4III ACNGT 3 cut(s) 21, 334, 482
HpyCH4IV ACGT 2 cut(s) 138, 245
HpyCH4V TGCA 6 cut(s) 29, 76, 233, 242, 307, 531
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
HpyF3I CTNAG 1 cut(s) 288
HpySE526I ACGT 2 cut(s) 138, 245
Hsp92II CATG 4 cut(s) 253, 307, 445, 454
KflI GGGWCCC 1 cut(s) 215
Kzo9I GATC 2 cut(s) 379, 393
LmnI GCTCC 1 cut(s) 271
LpnPI CCDG 4 cut(s) 61, 196, 285, 411
Lsp1109I GCAGC 1 cut(s) 420
LweI GCATC 2 cut(s) 38, 220
MaeII ACGT 2 cut(s) 138, 245
MaeIII GTNAC 1 cut(s) 328
MalI GATC 2 cut(s) 381, 395
MboI GATC 2 cut(s) 379, 393
MboII GAAGA 4 cut(s) 22, 71, 95, 466
MflI RGATCY 1 cut(s) 393
MhlI GDGCHC 1 cut(s) 93
MluCI AATT 3 cut(s) 113, 343, 419
MnlI CCTC 3 cut(s) 158, 413, 514
Mph1103I ATGCAT 1 cut(s) 309
MseI TTAA 1 cut(s) 495
Mva1269I GAATGC 1 cut(s) 307
MwoI GCNNNNNNNGC 1 cut(s) 239
NdeII GATC 2 cut(s) 379, 393
NlaIII CATG 4 cut(s) 253, 307, 445, 454
NlaIV GGNNCC 3 cut(s) 130, 216, 217
NmeAIII GCCGAG 1 cut(s) 384
NmuCI GTSAC 1 cut(s) 328
NsiI ATGCAT 1 cut(s) 309
NspI RCATGY 1 cut(s) 307
PaeI GCATGC 1 cut(s) 307
PagI TCATGA 1 cut(s) 450
PctI GAATGC 1 cut(s) 307
PfeI GAWTC 2 cut(s) 62, 108
PflMI CCANNNNNTGG 1 cut(s) 262
PkrI GCNGC 1 cut(s) 410
PpuMI RGGWCCY 1 cut(s) 215
Psp124BI GAGCTC 1 cut(s) 93
Psp1406I AACGTT 1 cut(s) 245
Psp5II RGGWCCY 1 cut(s) 215
PspN4I GGNNCC 3 cut(s) 130, 216, 217
PspPI GGNCC 2 cut(s) 215, 253
PspPPI RGGWCCY 1 cut(s) 215
PsuI RGATCY 1 cut(s) 393
RsaI GTAC 1 cut(s) 484
RsaNI GTAC 1 cut(s) 483
SacI GAGCTC 1 cut(s) 93
SaqAI TTAA 1 cut(s) 495
SatI GCNGC 1 cut(s) 409
Sau3AI GATC 2 cut(s) 379, 393
Sau96I GGNCC 2 cut(s) 215, 253
SduI GDGCHC 1 cut(s) 93
SfaNI GCATC 2 cut(s) 38, 220
SfcI CTRYAG 1 cut(s) 486
SinI GGWCC 2 cut(s) 215, 253
SphI GCATGC 1 cut(s) 307
Sse9I AATT 3 cut(s) 113, 343, 419
SstI GAGCTC 1 cut(s) 93
StyI CCWWGG 1 cut(s) 256
TaaI ACNGT 3 cut(s) 21, 334, 482
TaiI ACGT 2 cut(s) 141, 248
TaqI TCGA 1 cut(s) 228
TasI AATT 3 cut(s) 113, 343, 419
TatI WGTACW 1 cut(s) 482
TfiI GAWTC 2 cut(s) 62, 108
Tru1I TTAA 1 cut(s) 495
Tru9I TTAA 1 cut(s) 495
TscAI CASTG 1 cut(s) 339
TseFI GTSAC 1 cut(s) 328
TseI GCWGC 1 cut(s) 408
Tsp45I GTSAC 1 cut(s) 328
TspDTI ATGAA 5 cut(s) 72, 162, 238, 436, 467
TspRI CASTG 1 cut(s) 339
Van91I CCANNNNNTGG 1 cut(s) 262
VpaK11BI GGWCC 2 cut(s) 215, 253
XapI RAATTY 1 cut(s) 343
XceI RCATGY 1 cut(s) 307
Zsp2I ATGCAT 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.